EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMICG00000001659 (Gene tree)
Gene ID: 105855003
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Minus strand
Length: 32699 bases
Position: chr24:43919-76617
Accession: 105855003
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000027467	UPF1_Zn_bind	PF09416.10	8.3e-75	1	1
ENSMICP00000001513	UPF1_Zn_bind	PF09416.10	8.9e-75	1	1
ENSMICP00000022349	UPF1_Zn_bind	PF09416.10	9e-75	1	1
ENSMICP00000027467	ResIII	PF04851.15	3.1e-05	1	1
ENSMICP00000022349	ResIII	PF04851.15	3.2e-05	1	1
ENSMICP00000001513	ResIII	PF04851.15	3.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000047533	UPF1-201	5265	XM_012735652	ENSMICP00000022349	1118 (aa)	XP_012591106	UPI000642E610
ENSMICT00000001667	UPF1-202	3360	-	ENSMICP00000001513	1119 (aa)	-	UPI000C2EC21B
ENSMICT00000040322	UPF1-203	3267	-	ENSMICP00000027467	1088 (aa)	-	UPI000C2ED43F

Gene Model

Click here to download ENSMICG00000001659's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000001659's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000001659	UPF1	100	99.553	ENSG00000005007	UPF1	100	99.553	Homo_sapiens
ENSMICG00000001659	UPF1	100	91.281	ENSAPOG00000023773	upf1	100	91.370	Acanthochromis_polyacanthus
ENSMICG00000001659	UPF1	100	92.417	ENSAPOG00000010916	-	100	92.417	Acanthochromis_polyacanthus
ENSMICG00000001659	UPF1	100	97.087	ENSAMEG00000011474	UPF1	100	97.087	Ailuropoda_melanoleuca
ENSMICG00000001659	UPF1	92	94.732	ENSACIG00000010985	-	100	94.829	Amphilophus_citrinellus
ENSMICG00000001659	UPF1	100	91.111	ENSACIG00000019949	upf1	100	91.459	Amphilophus_citrinellus
ENSMICG00000001659	UPF1	100	90.795	ENSAOCG00000018519	upf1	100	91.366	Amphiprion_ocellaris
ENSMICG00000001659	UPF1	100	92.507	ENSAOCG00000006352	-	100	92.507	Amphiprion_ocellaris
ENSMICG00000001659	UPF1	100	92.507	ENSAPEG00000006292	-	100	92.507	Amphiprion_percula
ENSMICG00000001659	UPF1	100	90.795	ENSAPEG00000016344	upf1	100	91.366	Amphiprion_percula
ENSMICG00000001659	UPF1	100	89.974	ENSATEG00000017867	upf1	100	90.765	Anabas_testudineus
ENSMICG00000001659	UPF1	100	92.507	ENSATEG00000016606	-	100	92.507	Anabas_testudineus
ENSMICG00000001659	UPF1	93	97.812	ENSAPLG00000009175	UPF1	99	97.812	Anas_platyrhynchos
ENSMICG00000001659	UPF1	95	95.907	ENSANAG00000024107	UPF1	97	95.907	Aotus_nancymaae
ENSMICG00000001659	UPF1	100	90.844	ENSACLG00000007181	upf1	100	91.192	Astatotilapia_calliptera
ENSMICG00000001659	UPF1	100	92.239	ENSACLG00000022630	-	100	92.150	Astatotilapia_calliptera
ENSMICG00000001659	UPF1	100	92.870	ENSAMXG00000042187	upf1	100	93.316	Astyanax_mexicanus
ENSMICG00000001659	UPF1	100	98.053	ENSBTAG00000020922	UPF1	100	98.053	Bos_taurus
ENSMICG00000001659	UPF1	89	51.518	WBGene00004880	smg-2	99	48.897	Caenorhabditis_elegans
ENSMICG00000001659	UPF1	100	98.583	ENSCJAG00000019627	UPF1	100	98.583	Callithrix_jacchus
ENSMICG00000001659	UPF1	100	98.407	ENSCAFG00000014578	UPF1	100	98.407	Canis_familiaris
ENSMICG00000001659	UPF1	100	99.374	ENSCAFG00020012347	UPF1	100	99.374	Canis_lupus_dingo
ENSMICG00000001659	UPF1	100	99.017	ENSCHIG00000011018	UPF1	100	99.017	Capra_hircus
ENSMICG00000001659	UPF1	96	97.043	ENSTSYG00000008877	UPF1	99	97.043	Carlito_syrichta
ENSMICG00000001659	UPF1	97	94.486	ENSCAPG00000005758	UPF1	95	98.289	Cavia_aperea
ENSMICG00000001659	UPF1	100	95.933	ENSCPOG00000025463	UPF1	100	95.933	Cavia_porcellus
ENSMICG00000001659	UPF1	100	99.553	ENSCCAG00000032175	UPF1	100	99.553	Cebus_capucinus
ENSMICG00000001659	UPF1	96	96.214	ENSCATG00000040306	UPF1	99	96.214	Cercocebus_atys
ENSMICG00000001659	UPF1	96	97.412	ENSCLAG00000004037	UPF1	100	98.669	Chinchilla_lanigera
ENSMICG00000001659	UPF1	100	99.463	ENSCSAG00000005276	UPF1	100	99.463	Chlorocebus_sabaeus
ENSMICG00000001659	UPF1	100	96.699	ENSCPBG00000012513	UPF1	100	96.699	Chrysemys_picta_bellii
ENSMICG00000001659	UPF1	78	79.601	ENSCING00000021399	-	99	79.371	Ciona_intestinalis
ENSMICG00000001659	UPF1	99	71.972	ENSCSAVG00000006533	-	99	71.972	Ciona_savignyi
ENSMICG00000001659	UPF1	95	97.944	ENSCANG00000029819	UPF1	99	97.944	Colobus_angolensis_palliatus
ENSMICG00000001659	UPF1	100	98.479	ENSCGRG00001021067	Upf1	100	98.479	Cricetulus_griseus_chok1gshd
ENSMICG00000001659	UPF1	95	97.194	ENSCGRG00000013480	Upf1	99	97.194	Cricetulus_griseus_crigri
ENSMICG00000001659	UPF1	100	92.411	ENSCSEG00000016159	-	100	92.321	Cynoglossus_semilaevis
ENSMICG00000001659	UPF1	100	86.530	ENSCSEG00000017239	upf1	100	86.619	Cynoglossus_semilaevis
ENSMICG00000001659	UPF1	100	92.239	ENSCVAG00000010561	upf1	100	92.150	Cyprinodon_variegatus
ENSMICG00000001659	UPF1	100	92.692	ENSDARG00000016302	upf1	100	93.137	Danio_rerio
ENSMICG00000001659	UPF1	95	95.962	ENSDORG00000009984	Upf1	96	95.962	Dipodomys_ordii
ENSMICG00000001659	UPF1	85	70.941	FBgn0030354	Upf1	84	67.485	Drosophila_melanogaster
ENSMICG00000001659	UPF1	55	85.575	ENSEBUG00000010069	upf1	96	85.413	Eptatretus_burgeri
ENSMICG00000001659	UPF1	100	99.196	ENSEASG00005006549	UPF1	100	99.196	Equus_asinus_asinus
ENSMICG00000001659	UPF1	100	99.196	ENSECAG00000010639	UPF1	100	99.196	Equus_caballus
ENSMICG00000001659	UPF1	100	90.328	ENSELUG00000020917	upf1	100	90.594	Esox_lucius
ENSMICG00000001659	UPF1	100	91.667	ENSELUG00000012916	-	100	91.585	Esox_lucius
ENSMICG00000001659	UPF1	100	98.319	ENSFCAG00000009757	UPF1	100	98.319	Felis_catus
ENSMICG00000001659	UPF1	96	96.571	ENSFALG00000009312	UPF1	99	96.571	Ficedula_albicollis
ENSMICG00000001659	UPF1	97	96.150	ENSFDAG00000014816	UPF1	100	98.574	Fukomys_damarensis
ENSMICG00000001659	UPF1	100	88.407	ENSFHEG00000006428	upf1	100	88.407	Fundulus_heteroclitus
ENSMICG00000001659	UPF1	85	95.477	ENSFHEG00000016276	-	96	95.477	Fundulus_heteroclitus
ENSMICG00000001659	UPF1	100	91.166	ENSGMOG00000007541	upf1	100	91.608	Gadus_morhua
ENSMICG00000001659	UPF1	100	97.587	ENSGALG00000003220	UPF1	100	97.587	Gallus_gallus
ENSMICG00000001659	UPF1	62	95.533	ENSGAFG00000015443	-	88	93.166	Gambusia_affinis
ENSMICG00000001659	UPF1	100	92.143	ENSGAFG00000004831	upf1	100	92.054	Gambusia_affinis
ENSMICG00000001659	UPF1	100	97.143	ENSGAGG00000022217	UPF1	100	97.143	Gopherus_agassizii
ENSMICG00000001659	UPF1	93	99.712	ENSGGOG00000002608	UPF1	99	99.712	Gorilla_gorilla
ENSMICG00000001659	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSMICG00000001659	UPF1	91	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSMICG00000001659	UPF1	100	98.317	ENSHGLG00000010900	UPF1	100	98.317	Heterocephalus_glaber_female
ENSMICG00000001659	UPF1	96	94.922	ENSHGLG00100005904	UPF1	99	94.922	Heterocephalus_glaber_male
ENSMICG00000001659	UPF1	100	91.518	ENSHCOG00000008918	upf1	100	93.810	Hippocampus_comes
ENSMICG00000001659	UPF1	100	93.316	ENSIPUG00000005108	UPF1	100	93.672	Ictalurus_punctatus
ENSMICG00000001659	UPF1	100	99.374	ENSSTOG00000009196	UPF1	100	99.374	Ictidomys_tridecemlineatus
ENSMICG00000001659	UPF1	100	97.520	ENSJJAG00000023151	Upf1	100	97.520	Jaculus_jaculus
ENSMICG00000001659	UPF1	100	92.596	ENSKMAG00000004962	upf1	100	92.507	Kryptolebias_marmoratus
ENSMICG00000001659	UPF1	100	92.157	ENSLBEG00000027848	-	100	92.157	Labrus_bergylta
ENSMICG00000001659	UPF1	100	89.427	ENSLBEG00000014862	upf1	100	90.573	Labrus_bergylta
ENSMICG00000001659	UPF1	62	97.131	ENSLACG00000008482	UPF1	100	97.131	Latimeria_chalumnae
ENSMICG00000001659	UPF1	100	94.911	ENSLOCG00000002072	upf1	100	94.911	Lepisosteus_oculatus
ENSMICG00000001659	UPF1	100	97.788	ENSLAFG00000014963	UPF1	100	97.788	Loxodonta_africana
ENSMICG00000001659	UPF1	100	98.583	ENSMFAG00000037748	UPF1	100	98.583	Macaca_fascicularis
ENSMICG00000001659	UPF1	100	98.583	ENSMMUG00000023286	UPF1	100	98.583	Macaca_mulatta
ENSMICG00000001659	UPF1	100	98.583	ENSMNEG00000000046	UPF1	100	98.583	Macaca_nemestrina
ENSMICG00000001659	UPF1	93	98.669	ENSMLEG00000028404	UPF1	100	98.669	Mandrillus_leucophaeus
ENSMICG00000001659	UPF1	100	91.533	ENSMAMG00000006231	-	100	91.979	Mastacembelus_armatus
ENSMICG00000001659	UPF1	100	89.710	ENSMAMG00000006229	upf1	100	90.765	Mastacembelus_armatus
ENSMICG00000001659	UPF1	100	92.239	ENSMZEG00005016386	-	100	92.150	Maylandia_zebra
ENSMICG00000001659	UPF1	100	89.807	ENSMZEG00005003489	upf1	100	90.989	Maylandia_zebra
ENSMICG00000001659	UPF1	93	97.338	ENSMGAG00000004745	UPF1	100	97.338	Meleagris_gallopavo
ENSMICG00000001659	UPF1	95	96.475	ENSMAUG00000011398	Upf1	97	96.475	Mesocricetus_auratus
ENSMICG00000001659	UPF1	100	97.343	ENSMOCG00000005699	Upf1	100	97.343	Microtus_ochrogaster
ENSMICG00000001659	UPF1	100	90.617	ENSMMOG00000007881	upf1	100	91.071	Mola_mola
ENSMICG00000001659	UPF1	93	92.418	ENSMMOG00000007537	-	99	92.514	Mola_mola
ENSMICG00000001659	UPF1	100	96.911	ENSMODG00000003689	UPF1	100	96.911	Monodelphis_domestica
ENSMICG00000001659	UPF1	100	91.208	ENSMALG00000018100	-	100	91.208	Monopterus_albus
ENSMICG00000001659	UPF1	100	90.795	ENSMALG00000000144	upf1	100	91.063	Monopterus_albus
ENSMICG00000001659	UPF1	100	98.390	MGP_CAROLIEiJ_G0031142	Upf1	100	98.390	Mus_caroli
ENSMICG00000001659	UPF1	100	98.390	ENSMUSG00000058301	Upf1	100	98.390	Mus_musculus
ENSMICG00000001659	UPF1	100	98.390	MGP_PahariEiJ_G0021607	Upf1	100	98.390	Mus_pahari
ENSMICG00000001659	UPF1	100	98.390	MGP_SPRETEiJ_G0032260	Upf1	100	98.390	Mus_spretus
ENSMICG00000001659	UPF1	100	99.374	ENSMPUG00000015516	UPF1	100	99.374	Mustela_putorius_furo
ENSMICG00000001659	UPF1	99	99.103	ENSMLUG00000012122	UPF1	99	99.103	Myotis_lucifugus
ENSMICG00000001659	UPF1	100	97.609	ENSNGAG00000024107	Upf1	100	97.609	Nannospalax_galili
ENSMICG00000001659	UPF1	100	88.898	ENSNBRG00000022069	-	100	93.780	Neolamprologus_brichardi
ENSMICG00000001659	UPF1	100	89.156	ENSNBRG00000000670	upf1	100	89.502	Neolamprologus_brichardi
ENSMICG00000001659	UPF1	93	92.871	ENSNLEG00000006062	UPF1	100	92.871	Nomascus_leucogenys
ENSMICG00000001659	UPF1	83	94.118	ENSMEUG00000014146	-	83	94.118	Notamacropus_eugenii
ENSMICG00000001659	UPF1	93	91.835	ENSOPRG00000014018	UPF1	100	91.835	Ochotona_princeps
ENSMICG00000001659	UPF1	100	96.900	ENSODEG00000012426	UPF1	100	96.900	Octodon_degus
ENSMICG00000001659	UPF1	100	92.328	ENSONIG00000012729	-	100	92.239	Oreochromis_niloticus
ENSMICG00000001659	UPF1	100	90.070	ENSONIG00000010452	upf1	100	91.254	Oreochromis_niloticus
ENSMICG00000001659	UPF1	100	96.290	ENSOANG00000004568	UPF1	100	96.290	Ornithorhynchus_anatinus
ENSMICG00000001659	UPF1	100	92.328	ENSORLG00000008453	upf1	100	92.328	Oryzias_latipes
ENSMICG00000001659	UPF1	100	92.157	ENSORLG00020014758	upf1	100	92.157	Oryzias_latipes_hni
ENSMICG00000001659	UPF1	100	92.157	ENSORLG00015010165	upf1	100	92.157	Oryzias_latipes_hsok
ENSMICG00000001659	UPF1	100	92.417	ENSOMEG00000003665	upf1	100	92.328	Oryzias_melastigma
ENSMICG00000001659	UPF1	100	99.642	ENSOGAG00000012866	UPF1	100	99.642	Otolemur_garnettii
ENSMICG00000001659	UPF1	96	96.044	ENSOARG00000010739	UPF1	100	96.044	Ovis_aries
ENSMICG00000001659	UPF1	95	97.757	ENSPPAG00000043884	UPF1	97	97.757	Pan_paniscus
ENSMICG00000001659	UPF1	100	98.319	ENSPPRG00000023470	UPF1	100	98.319	Panthera_pardus
ENSMICG00000001659	UPF1	93	97.500	ENSPTIG00000010159	UPF1	99	97.500	Panthera_tigris_altaica
ENSMICG00000001659	UPF1	100	98.583	ENSPTRG00000010721	UPF1	100	98.583	Pan_troglodytes
ENSMICG00000001659	UPF1	100	98.583	ENSPANG00000008847	UPF1	100	98.583	Papio_anubis
ENSMICG00000001659	UPF1	94	92.439	ENSPKIG00000006069	upf1	99	92.344	Paramormyrops_kingsleyae
ENSMICG00000001659	UPF1	68	97.778	ENSPSIG00000009491	UPF1	100	97.778	Pelodiscus_sinensis
ENSMICG00000001659	UPF1	100	89.146	ENSPMGG00000017327	upf1	100	89.254	Periophthalmus_magnuspinnatus
ENSMICG00000001659	UPF1	100	97.520	ENSPEMG00000001085	Upf1	100	97.520	Peromyscus_maniculatus_bairdii
ENSMICG00000001659	UPF1	100	87.088	ENSPMAG00000001206	upf1	100	86.525	Petromyzon_marinus
ENSMICG00000001659	UPF1	100	98.391	ENSPCIG00000006156	UPF1	100	98.391	Phascolarctos_cinereus
ENSMICG00000001659	UPF1	100	89.381	ENSPLAG00000018155	-	100	89.292	Poecilia_latipinna
ENSMICG00000001659	UPF1	100	92.232	ENSPLAG00000016232	-	100	92.143	Poecilia_latipinna
ENSMICG00000001659	UPF1	100	89.929	ENSPMEG00000011443	-	100	89.840	Poecilia_mexicana
ENSMICG00000001659	UPF1	100	92.150	ENSPMEG00000016319	-	100	92.061	Poecilia_mexicana
ENSMICG00000001659	UPF1	100	89.673	ENSPREG00000009940	upf1	100	89.673	Poecilia_reticulata
ENSMICG00000001659	UPF1	100	92.054	ENSPREG00000011247	-	100	91.964	Poecilia_reticulata
ENSMICG00000001659	UPF1	100	93.623	ENSPPYG00000009752	UPF1	100	93.623	Pongo_abelii
ENSMICG00000001659	UPF1	77	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSMICG00000001659	UPF1	100	98.583	ENSPCOG00000023813	UPF1	100	98.583	Propithecus_coquereli
ENSMICG00000001659	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSMICG00000001659	UPF1	100	92.239	ENSPNYG00000016731	-	100	92.150	Pundamilia_nyererei
ENSMICG00000001659	UPF1	100	89.807	ENSPNYG00000003694	upf1	100	90.989	Pundamilia_nyererei
ENSMICG00000001659	UPF1	100	93.048	ENSPNAG00000025614	upf1	100	93.494	Pygocentrus_nattereri
ENSMICG00000001659	UPF1	100	98.390	ENSRNOG00000020134	Upf1	100	98.390	Rattus_norvegicus
ENSMICG00000001659	UPF1	95	95.607	ENSRBIG00000013894	UPF1	98	99.452	Rhinopithecus_bieti
ENSMICG00000001659	UPF1	95	97.944	ENSRROG00000040935	UPF1	98	99.452	Rhinopithecus_roxellana
ENSMICG00000001659	UPF1	80	53.880	YMR080C	NAM7	90	53.880	Saccharomyces_cerevisiae
ENSMICG00000001659	UPF1	96	96.584	ENSSBOG00000023632	UPF1	99	96.584	Saimiri_boliviensis_boliviensis
ENSMICG00000001659	UPF1	93	97.721	ENSSHAG00000010499	UPF1	100	97.721	Sarcophilus_harrisii
ENSMICG00000001659	UPF1	100	94.737	ENSSFOG00015021095	upf1	99	97.118	Scleropages_formosus
ENSMICG00000001659	UPF1	100	92.335	ENSSMAG00000021018	-	100	92.335	Scophthalmus_maximus
ENSMICG00000001659	UPF1	100	89.075	ENSSMAG00000005055	upf1	100	89.877	Scophthalmus_maximus
ENSMICG00000001659	UPF1	100	92.513	ENSSDUG00000009629	-	100	92.513	Seriola_dumerili
ENSMICG00000001659	UPF1	100	89.974	ENSSDUG00000013320	upf1	100	90.853	Seriola_dumerili
ENSMICG00000001659	UPF1	100	90.772	ENSSLDG00000020868	upf1	100	91.143	Seriola_lalandi_dorsalis
ENSMICG00000001659	UPF1	100	92.513	ENSSLDG00000006878	-	100	92.513	Seriola_lalandi_dorsalis
ENSMICG00000001659	UPF1	100	96.962	ENSSPUG00000010538	UPF1	100	96.962	Sphenodon_punctatus
ENSMICG00000001659	UPF1	100	92.500	ENSSPAG00000011521	-	100	92.411	Stegastes_partitus
ENSMICG00000001659	UPF1	100	89.286	ENSSPAG00000000003	upf1	100	89.225	Stegastes_partitus
ENSMICG00000001659	UPF1	100	98.928	ENSSSCG00000039301	UPF1	100	98.928	Sus_scrofa
ENSMICG00000001659	UPF1	84	89.915	ENSTGUG00000001057	UPF1	100	95.428	Taeniopygia_guttata
ENSMICG00000001659	UPF1	100	91.429	ENSTRUG00000005131	-	100	91.429	Takifugu_rubripes
ENSMICG00000001659	UPF1	100	90.527	ENSTRUG00000000150	upf1	100	90.527	Takifugu_rubripes
ENSMICG00000001659	UPF1	100	95.174	ENSTTRG00000011544	UPF1	100	94.549	Tursiops_truncatus
ENSMICG00000001659	UPF1	100	99.285	ENSUAMG00000007093	UPF1	100	99.285	Ursus_americanus
ENSMICG00000001659	UPF1	95	98.395	ENSUMAG00000006652	UPF1	99	99.793	Ursus_maritimus
ENSMICG00000001659	UPF1	100	99.374	ENSVVUG00000007797	UPF1	100	99.374	Vulpes_vulpes
ENSMICG00000001659	UPF1	100	82.026	ENSXETG00000013602	upf1	100	82.026	Xenopus_tropicalis
ENSMICG00000001659	UPF1	97	89.751	ENSXCOG00000015275	-	96	89.658	Xiphophorus_couchianus
ENSMICG00000001659	UPF1	92	94.762	ENSXCOG00000005764	-	100	94.762	Xiphophorus_couchianus
ENSMICG00000001659	UPF1	100	90.000	ENSXMAG00000001703	-	100	89.911	Xiphophorus_maculatus
ENSMICG00000001659	UPF1	100	91.971	ENSXMAG00000002540	-	100	91.882	Xiphophorus_maculatus