EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMICG00000001743 (Gene tree)
Gene ID: -
Gene Symbol: UPF3B
Alias: HUPF3B|MRX62|RENT3B|UPF3BP1|UPF3BP2|UPF3BP3|UPF3X
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Plus strand
Length: 14886 bases
Position: chrX:48081728-48096613
Accession: 20439
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000001586	Smg4_UPF3	PF03467.15	2.3e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000001743	UPF3B-201	960	-	ENSMICP00000001586	319 (aa)	-	UPI00085B4410

Gene Model

Click here to download ENSMICG00000001743's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000001743's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000001743	UPF3B	100	97.407	ENSG00000125351	UPF3B	99	96.729	Homo_sapiens
ENSMICG00000001743	UPF3B	66	68.720	ENSAPOG00000012775	upf3b	56	68.613	Acanthochromis_polyacanthus
ENSMICG00000001743	UPF3B	100	97.778	ENSAMEG00000000163	UPF3B	71	97.778	Ailuropoda_melanoleuca
ENSMICG00000001743	UPF3B	85	60.073	ENSACIG00000013582	upf3b	55	61.818	Amphilophus_citrinellus
ENSMICG00000001743	UPF3B	51	70.732	ENSACIG00000020468	upf3a	83	66.129	Amphilophus_citrinellus
ENSMICG00000001743	UPF3B	85	66.912	ENSAOCG00000000706	upf3b	56	67.153	Amphiprion_ocellaris
ENSMICG00000001743	UPF3B	66	68.720	ENSAPEG00000005545	upf3b	56	68.613	Amphiprion_percula
ENSMICG00000001743	UPF3B	66	69.194	ENSATEG00000018742	upf3b	55	68.978	Anabas_testudineus
ENSMICG00000001743	UPF3B	87	84.416	ENSACAG00000003625	UPF3B	68	76.277	Anolis_carolinensis
ENSMICG00000001743	UPF3B	90	71.181	ENSANAG00000033169	-	100	70.486	Aotus_nancymaae
ENSMICG00000001743	UPF3B	100	97.037	ENSANAG00000021894	-	100	96.865	Aotus_nancymaae
ENSMICG00000001743	UPF3B	100	88.148	ENSANAG00000025598	-	100	82.555	Aotus_nancymaae
ENSMICG00000001743	UPF3B	85	67.279	ENSACLG00000001649	upf3b	56	67.883	Astatotilapia_calliptera
ENSMICG00000001743	UPF3B	95	61.688	ENSAMXG00000000199	upf3b	97	59.740	Astyanax_mexicanus
ENSMICG00000001743	UPF3B	50	68.125	ENSBTAG00000047365	-	72	68.125	Bos_taurus
ENSMICG00000001743	UPF3B	97	97.727	ENSBTAG00000035615	UPF3B	100	97.727	Bos_taurus
ENSMICG00000001743	UPF3B	66	32.407	WBGene00004882	smg-4	50	31.098	Caenorhabditis_elegans
ENSMICG00000001743	UPF3B	100	97.407	ENSCJAG00000004975	UPF3B	100	97.179	Callithrix_jacchus
ENSMICG00000001743	UPF3B	100	97.037	ENSCAFG00000018426	UPF3B	71	97.037	Canis_familiaris
ENSMICG00000001743	UPF3B	100	96.000	ENSCAFG00020004074	UPF3B	74	95.726	Canis_lupus_dingo
ENSMICG00000001743	UPF3B	97	97.778	ENSCHIG00000018011	-	100	97.403	Capra_hircus
ENSMICG00000001743	UPF3B	100	98.148	ENSCHIG00000000247	-	70	98.148	Capra_hircus
ENSMICG00000001743	UPF3B	86	71.429	ENSCHIG00000011454	-	61	71.429	Capra_hircus
ENSMICG00000001743	UPF3B	100	98.000	ENSTSYG00000014690	UPF3B	100	93.252	Carlito_syrichta
ENSMICG00000001743	UPF3B	100	69.018	ENSCCAG00000021964	-	100	69.018	Cebus_capucinus
ENSMICG00000001743	UPF3B	96	67.752	ENSCCAG00000029813	-	97	68.301	Cebus_capucinus
ENSMICG00000001743	UPF3B	100	97.407	ENSCATG00000017506	UPF3B	100	96.865	Cercocebus_atys
ENSMICG00000001743	UPF3B	100	94.815	ENSCLAG00000003260	UPF3B	72	94.815	Chinchilla_lanigera
ENSMICG00000001743	UPF3B	100	97.407	ENSCSAG00000018348	UPF3B	70	97.407	Chlorocebus_sabaeus
ENSMICG00000001743	UPF3B	77	72.772	ENSCPBG00000020685	UPF3B	61	77.489	Chrysemys_picta_bellii
ENSMICG00000001743	UPF3B	56	46.667	ENSCING00000008396	-	91	51.370	Ciona_intestinalis
ENSMICG00000001743	UPF3B	100	96.865	ENSCANG00000029220	UPF3B	100	96.865	Colobus_angolensis_palliatus
ENSMICG00000001743	UPF3B	100	88.889	ENSCGRG00001006858	-	69	88.889	Cricetulus_griseus_chok1gshd
ENSMICG00000001743	UPF3B	85	83.704	ENSCGRG00001013643	-	73	80.370	Cricetulus_griseus_chok1gshd
ENSMICG00000001743	UPF3B	84	93.578	ENSCGRG00000007627	Upf3b	65	93.578	Cricetulus_griseus_crigri
ENSMICG00000001743	UPF3B	85	66.058	ENSCSEG00000002046	upf3b	54	66.058	Cynoglossus_semilaevis
ENSMICG00000001743	UPF3B	65	66.029	ENSCVAG00000005030	upf3b	56	66.300	Cyprinodon_variegatus
ENSMICG00000001743	UPF3B	85	67.518	ENSDARG00000000489	upf3b	55	67.518	Danio_rerio
ENSMICG00000001743	UPF3B	100	95.926	ENSDNOG00000008665	UPF3B	70	95.926	Dasypus_novemcinctus
ENSMICG00000001743	UPF3B	100	90.000	ENSDORG00000006077	Upf3b	69	90.000	Dipodomys_ordii
ENSMICG00000001743	UPF3B	99	97.872	ENSEASG00005012919	UPF3B	72	97.345	Equus_asinus_asinus
ENSMICG00000001743	UPF3B	99	97.872	ENSECAG00000016947	UPF3B	71	94.444	Equus_caballus
ENSMICG00000001743	UPF3B	85	66.912	ENSELUG00000020389	upf3b	57	63.356	Esox_lucius
ENSMICG00000001743	UPF3B	100	97.778	ENSFCAG00000004388	UPF3B	79	97.778	Felis_catus
ENSMICG00000001743	UPF3B	99	73.592	ENSFALG00000001569	UPF3B	75	69.258	Ficedula_albicollis
ENSMICG00000001743	UPF3B	100	96.296	ENSFDAG00000018869	UPF3B	71	96.296	Fukomys_damarensis
ENSMICG00000001743	UPF3B	85	65.074	ENSGMOG00000001621	upf3b	54	65.074	Gadus_morhua
ENSMICG00000001743	UPF3B	99	74.182	ENSGALG00000008618	UPF3B	69	73.818	Gallus_gallus
ENSMICG00000001743	UPF3B	88	65.550	ENSGAFG00000000829	upf3b	57	65.818	Gambusia_affinis
ENSMICG00000001743	UPF3B	90	67.820	ENSGACG00000017435	upf3b	100	68.512	Gasterosteus_aculeatus
ENSMICG00000001743	UPF3B	99	75.824	ENSGAGG00000001219	UPF3B	71	74.545	Gopherus_agassizii
ENSMICG00000001743	UPF3B	52	69.091	ENSGAGG00000001952	UPF3A	81	74.648	Gopherus_agassizii
ENSMICG00000001743	UPF3B	100	97.407	ENSGGOG00000023995	UPF3B	100	96.865	Gorilla_gorilla
ENSMICG00000001743	UPF3B	85	67.279	ENSHBUG00000017393	upf3b	56	67.883	Haplochromis_burtoni
ENSMICG00000001743	UPF3B	100	95.556	ENSHGLG00000019582	-	71	95.556	Heterocephalus_glaber_female
ENSMICG00000001743	UPF3B	85	87.037	ENSHGLG00000011189	-	64	87.037	Heterocephalus_glaber_female
ENSMICG00000001743	UPF3B	85	87.037	ENSHGLG00100001889	-	65	87.037	Heterocephalus_glaber_male
ENSMICG00000001743	UPF3B	100	95.556	ENSHGLG00100002042	-	73	95.556	Heterocephalus_glaber_male
ENSMICG00000001743	UPF3B	66	67.773	ENSHCOG00000017004	upf3b	55	67.897	Hippocampus_comes
ENSMICG00000001743	UPF3B	55	67.416	ENSHCOG00000013985	upf3a	66	72.611	Hippocampus_comes
ENSMICG00000001743	UPF3B	87	64.748	ENSIPUG00000019249	upf3b	58	66.171	Ictalurus_punctatus
ENSMICG00000001743	UPF3B	100	95.926	ENSSTOG00000001101	UPF3B	69	95.926	Ictidomys_tridecemlineatus
ENSMICG00000001743	UPF3B	50	63.975	ENSSTOG00000030282	-	68	63.975	Ictidomys_tridecemlineatus
ENSMICG00000001743	UPF3B	100	92.963	ENSJJAG00000000053	Upf3b	71	92.963	Jaculus_jaculus
ENSMICG00000001743	UPF3B	89	66.825	ENSKMAG00000020300	upf3b	56	66.788	Kryptolebias_marmoratus
ENSMICG00000001743	UPF3B	85	66.176	ENSLBEG00000028689	upf3b	56	66.176	Labrus_bergylta
ENSMICG00000001743	UPF3B	64	79.747	ENSLACG00000008691	UPF3B	65	69.597	Latimeria_chalumnae
ENSMICG00000001743	UPF3B	71	73.799	ENSLOCG00000015238	upf3b	52	74.783	Lepisosteus_oculatus
ENSMICG00000001743	UPF3B	100	97.037	ENSLAFG00000001267	UPF3B	71	97.037	Loxodonta_africana
ENSMICG00000001743	UPF3B	68	72.566	ENSMFAG00000045275	-	94	71.889	Macaca_fascicularis
ENSMICG00000001743	UPF3B	100	97.407	ENSMFAG00000045414	UPF3B	100	96.865	Macaca_fascicularis
ENSMICG00000001743	UPF3B	100	97.407	ENSMMUG00000020222	UPF3B	100	96.865	Macaca_mulatta
ENSMICG00000001743	UPF3B	68	70.354	ENSMMUG00000046682	-	94	67.281	Macaca_mulatta
ENSMICG00000001743	UPF3B	100	97.407	ENSMNEG00000039794	UPF3B	100	96.865	Macaca_nemestrina
ENSMICG00000001743	UPF3B	68	72.124	ENSMNEG00000040898	-	94	71.429	Macaca_nemestrina
ENSMICG00000001743	UPF3B	100	97.407	ENSMLEG00000010999	UPF3B	100	96.865	Mandrillus_leucophaeus
ENSMICG00000001743	UPF3B	85	67.279	ENSMZEG00005007871	upf3b	56	67.883	Maylandia_zebra
ENSMICG00000001743	UPF3B	71	80.435	ENSMGAG00000007728	UPF3B	61	80.435	Meleagris_gallopavo
ENSMICG00000001743	UPF3B	100	88.148	ENSMAUG00000008705	Upf3b	69	88.148	Mesocricetus_auratus
ENSMICG00000001743	UPF3B	100	93.333	ENSMOCG00000017893	Upf3b	70	93.333	Microtus_ochrogaster
ENSMICG00000001743	UPF3B	90	63.208	ENSMMOG00000004183	upf3b	61	59.868	Mola_mola
ENSMICG00000001743	UPF3B	83	83.784	ENSMODG00000010232	UPF3B	64	83.784	Monodelphis_domestica
ENSMICG00000001743	UPF3B	65	67.943	ENSMALG00000008042	upf3b	55	68.000	Monopterus_albus
ENSMICG00000001743	UPF3B	100	89.630	MGP_CAROLIEiJ_G0032999	Upf3b	71	89.630	Mus_caroli
ENSMICG00000001743	UPF3B	100	90.000	ENSMUSG00000036572	Upf3b	71	90.000	Mus_musculus
ENSMICG00000001743	UPF3B	100	89.630	MGP_PahariEiJ_G0031543	Upf3b	71	89.630	Mus_pahari
ENSMICG00000001743	UPF3B	100	90.000	MGP_SPRETEiJ_G0034152	Upf3b	71	90.000	Mus_spretus
ENSMICG00000001743	UPF3B	97	97.778	ENSMPUG00000001531	UPF3B	71	97.778	Mustela_putorius_furo
ENSMICG00000001743	UPF3B	100	97.037	ENSMLUG00000010821	UPF3B	72	97.037	Myotis_lucifugus
ENSMICG00000001743	UPF3B	100	89.630	ENSNGAG00000008231	Upf3b	73	89.630	Nannospalax_galili
ENSMICG00000001743	UPF3B	64	62.621	ENSNBRG00000011560	upf3b	95	65.605	Neolamprologus_brichardi
ENSMICG00000001743	UPF3B	100	97.037	ENSNLEG00000014897	UPF3B	79	97.973	Nomascus_leucogenys
ENSMICG00000001743	UPF3B	68	76.037	ENSNLEG00000027516	-	94	75.481	Nomascus_leucogenys
ENSMICG00000001743	UPF3B	53	62.722	ENSODEG00000009176	-	63	65.823	Octodon_degus
ENSMICG00000001743	UPF3B	70	78.947	ENSODEG00000007164	-	90	78.673	Octodon_degus
ENSMICG00000001743	UPF3B	68	70.046	ENSODEG00000000596	-	95	69.378	Octodon_degus
ENSMICG00000001743	UPF3B	100	96.667	ENSODEG00000002186	-	74	96.667	Octodon_degus
ENSMICG00000001743	UPF3B	68	73.272	ENSODEG00000006064	-	94	73.077	Octodon_degus
ENSMICG00000001743	UPF3B	85	69.118	ENSONIG00000002536	upf3b	55	69.853	Oreochromis_niloticus
ENSMICG00000001743	UPF3B	75	76.344	ENSOANG00000002594	-	50	85.350	Ornithorhynchus_anatinus
ENSMICG00000001743	UPF3B	100	95.926	ENSOCUG00000010213	UPF3B	70	95.926	Oryctolagus_cuniculus
ENSMICG00000001743	UPF3B	85	64.964	ENSORLG00000001026	upf3b	56	64.964	Oryzias_latipes
ENSMICG00000001743	UPF3B	90	58.904	ENSORLG00020003758	upf3b	91	58.562	Oryzias_latipes_hni
ENSMICG00000001743	UPF3B	85	64.599	ENSORLG00015012954	upf3b	56	64.599	Oryzias_latipes_hsok
ENSMICG00000001743	UPF3B	50	73.585	ENSOMEG00000014736	upf3b	56	64.964	Oryzias_melastigma
ENSMICG00000001743	UPF3B	96	84.502	ENSOGAG00000033003	-	67	84.502	Otolemur_garnettii
ENSMICG00000001743	UPF3B	100	96.296	ENSOGAG00000004643	-	69	96.296	Otolemur_garnettii
ENSMICG00000001743	UPF3B	100	97.070	ENSOARG00000016051	-	70	97.070	Ovis_aries
ENSMICG00000001743	UPF3B	84	79.167	ENSOARG00000007869	-	66	79.167	Ovis_aries
ENSMICG00000001743	UPF3B	100	97.407	ENSPPAG00000040390	UPF3B	100	96.865	Pan_paniscus
ENSMICG00000001743	UPF3B	100	97.778	ENSPPRG00000023536	UPF3B	71	97.778	Panthera_pardus
ENSMICG00000001743	UPF3B	100	97.778	ENSPTIG00000015264	UPF3B	100	96.865	Panthera_tigris_altaica
ENSMICG00000001743	UPF3B	100	97.407	ENSPTRG00000022228	UPF3B	100	96.865	Pan_troglodytes
ENSMICG00000001743	UPF3B	68	72.000	ENSPANG00000029350	-	93	70.370	Papio_anubis
ENSMICG00000001743	UPF3B	100	97.407	ENSPANG00000000900	UPF3B	100	96.865	Papio_anubis
ENSMICG00000001743	UPF3B	85	66.912	ENSPKIG00000019226	upf3b	74	78.261	Paramormyrops_kingsleyae
ENSMICG00000001743	UPF3B	56	82.682	ENSPSIG00000005833	UPF3B	63	82.682	Pelodiscus_sinensis
ENSMICG00000001743	UPF3B	85	67.153	ENSPMGG00000016067	upf3b	94	67.391	Periophthalmus_magnuspinnatus
ENSMICG00000001743	UPF3B	100	92.593	ENSPEMG00000012352	Upf3b	69	92.593	Peromyscus_maniculatus_bairdii
ENSMICG00000001743	UPF3B	87	75.510	ENSPCIG00000028914	UPF3B	61	74.468	Phascolarctos_cinereus
ENSMICG00000001743	UPF3B	89	47.256	ENSPCIG00000019590	-	66	71.333	Phascolarctos_cinereus
ENSMICG00000001743	UPF3B	54	68.750	ENSPLAG00000011960	upf3a	54	77.419	Poecilia_latipinna
ENSMICG00000001743	UPF3B	88	66.507	ENSPLAG00000019922	upf3b	57	66.909	Poecilia_latipinna
ENSMICG00000001743	UPF3B	88	66.986	ENSPLAG00000005105	upf3b	59	65.724	Poecilia_latipinna
ENSMICG00000001743	UPF3B	88	66.507	ENSPMEG00000023532	upf3b	57	66.909	Poecilia_mexicana
ENSMICG00000001743	UPF3B	100	92.771	ENSPPYG00000020675	-	100	92.771	Pongo_abelii
ENSMICG00000001743	UPF3B	100	95.185	ENSPCAG00000009464	UPF3B	70	95.185	Procavia_capensis
ENSMICG00000001743	UPF3B	100	99.259	ENSPCOG00000021960	UPF3B	100	98.746	Propithecus_coquereli
ENSMICG00000001743	UPF3B	100	87.755	ENSPVAG00000014075	UPF3B	66	87.755	Pteropus_vampyrus
ENSMICG00000001743	UPF3B	85	67.279	ENSPNYG00000009846	upf3b	56	67.883	Pundamilia_nyererei
ENSMICG00000001743	UPF3B	100	63.467	ENSPNAG00000021528	upf3b	100	63.467	Pygocentrus_nattereri
ENSMICG00000001743	UPF3B	100	90.370	ENSRNOG00000039994	Upf3b	71	90.370	Rattus_norvegicus
ENSMICG00000001743	UPF3B	73	96.739	ENSRBIG00000037219	UPF3B	65	96.739	Rhinopithecus_bieti
ENSMICG00000001743	UPF3B	100	97.407	ENSRROG00000041031	UPF3B	100	96.865	Rhinopithecus_roxellana
ENSMICG00000001743	UPF3B	100	96.667	ENSSBOG00000019740	UPF3B	100	96.552	Saimiri_boliviensis_boliviensis
ENSMICG00000001743	UPF3B	81	83.784	ENSSHAG00000008634	UPF3B	57	83.784	Sarcophilus_harrisii
ENSMICG00000001743	UPF3B	100	69.118	ENSSFOG00015005614	upf3b	64	75.342	Scleropages_formosus
ENSMICG00000001743	UPF3B	89	69.338	ENSSMAG00000012913	upf3b	89	69.550	Scophthalmus_maximus
ENSMICG00000001743	UPF3B	50	70.000	ENSSMAG00000003858	upf3a	78	67.241	Scophthalmus_maximus
ENSMICG00000001743	UPF3B	85	66.176	ENSSDUG00000005682	upf3b	56	66.788	Seriola_dumerili
ENSMICG00000001743	UPF3B	51	70.732	ENSSDUG00000009680	upf3a	57	76.344	Seriola_dumerili
ENSMICG00000001743	UPF3B	66	66.825	ENSSLDG00000003130	upf3b	56	67.153	Seriola_lalandi_dorsalis
ENSMICG00000001743	UPF3B	81	95.567	ENSSARG00000004147	UPF3B	63	93.119	Sorex_araneus
ENSMICG00000001743	UPF3B	99	74.638	ENSSPUG00000013082	UPF3B	68	71.377	Sphenodon_punctatus
ENSMICG00000001743	UPF3B	85	68.015	ENSSPAG00000009989	upf3b	56	68.382	Stegastes_partitus
ENSMICG00000001743	UPF3B	51	70.732	ENSSPAG00000007938	upf3a	72	70.701	Stegastes_partitus
ENSMICG00000001743	UPF3B	100	97.778	ENSSSCG00000012617	UPF3B	71	97.778	Sus_scrofa
ENSMICG00000001743	UPF3B	84	81.614	ENSTGUG00000003413	UPF3B	65	81.614	Taeniopygia_guttata
ENSMICG00000001743	UPF3B	70	72.973	ENSTRUG00000010645	upf3b	55	72.103	Takifugu_rubripes
ENSMICG00000001743	UPF3B	100	90.000	ENSTBEG00000003229	UPF3B	67	82.593	Tupaia_belangeri
ENSMICG00000001743	UPF3B	100	96.000	ENSUAMG00000024565	UPF3B	73	93.805	Ursus_americanus
ENSMICG00000001743	UPF3B	89	84.030	ENSUMAG00000002150	UPF3B	71	84.030	Ursus_maritimus
ENSMICG00000001743	UPF3B	77	98.477	ENSVPAG00000009971	UPF3B	64	98.477	Vicugna_pacos
ENSMICG00000001743	UPF3B	100	94.000	ENSVVUG00000011594	UPF3B	97	98.077	Vulpes_vulpes
ENSMICG00000001743	UPF3B	79	80.368	ENSXETG00000007440	upf3b	74	79.532	Xenopus_tropicalis
ENSMICG00000001743	UPF3B	84	66.029	ENSXCOG00000016586	upf3b	97	66.197	Xiphophorus_couchianus
ENSMICG00000001743	UPF3B	94	65.072	ENSXMAG00000013680	upf3b	57	65.818	Xiphophorus_maculatus