EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMICG00000002257 (Gene tree)
Gene ID: 105873135
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Plus strand
Length: 29551 bases
Position: chr2:120438885-120468435
Accession: 105873135
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000017375	EST1	PF10374.9	5.2e-24	1	1
ENSMICP00000017375	EST1_DNA_bind	PF10373.9	1.4e-40	1	2
ENSMICP00000017375	EST1_DNA_bind	PF10373.9	1.4e-40	2	2
ENSMICP00000017375	PIN_4	PF13638.6	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000045584	SMG5-201	4841	XM_012767743	ENSMICP00000017375	1015 (aa)	XP_012623197	UPI00064354DB

Gene Model

Click here to download ENSMICG00000002257's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000002257's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000002257	SMG5	100	97.441	ENSG00000198952	SMG5	100	97.441	Homo_sapiens
ENSMICG00000002257	SMG5	99	67.554	ENSAPOG00000019690	smg5	93	77.647	Acanthochromis_polyacanthus
ENSMICG00000002257	SMG5	98	92.749	ENSAMEG00000014458	SMG5	100	92.749	Ailuropoda_melanoleuca
ENSMICG00000002257	SMG5	99	64.938	ENSACIG00000001353	smg5	99	65.637	Amphilophus_citrinellus
ENSMICG00000002257	SMG5	98	64.665	ENSAOCG00000019483	smg5	93	66.564	Amphiprion_ocellaris
ENSMICG00000002257	SMG5	98	65.907	ENSAPEG00000022949	smg5	98	66.201	Amphiprion_percula
ENSMICG00000002257	SMG5	99	66.181	ENSATEG00000005348	smg5	99	67.089	Anabas_testudineus
ENSMICG00000002257	SMG5	98	79.317	ENSAPLG00000010263	SMG5	100	79.024	Anas_platyrhynchos
ENSMICG00000002257	SMG5	100	97.343	ENSANAG00000032899	SMG5	100	97.343	Aotus_nancymaae
ENSMICG00000002257	SMG5	99	64.581	ENSACLG00000009311	smg5	99	66.345	Astatotilapia_calliptera
ENSMICG00000002257	SMG5	99	44.498	ENSBTAG00000021747	-	99	43.756	Bos_taurus
ENSMICG00000002257	SMG5	100	95.669	ENSBTAG00000009435	SMG5	100	95.669	Bos_taurus
ENSMICG00000002257	SMG5	100	97.343	ENSCJAG00000005684	SMG5	100	97.343	Callithrix_jacchus
ENSMICG00000002257	SMG5	100	94.685	ENSCAFG00000016839	SMG5	100	93.996	Canis_familiaris
ENSMICG00000002257	SMG5	100	94.685	ENSCAFG00020006061	SMG5	100	93.996	Canis_lupus_dingo
ENSMICG00000002257	SMG5	99	44.629	ENSCHIG00000006323	-	99	43.555	Capra_hircus
ENSMICG00000002257	SMG5	100	95.571	ENSCHIG00000007709	SMG5	100	95.571	Capra_hircus
ENSMICG00000002257	SMG5	100	96.559	ENSTSYG00000004099	SMG5	100	96.559	Carlito_syrichta
ENSMICG00000002257	SMG5	97	74.037	ENSCAPG00000003631	SMG5	100	74.896	Cavia_aperea
ENSMICG00000002257	SMG5	100	95.187	ENSCPOG00000015696	SMG5	100	94.892	Cavia_porcellus
ENSMICG00000002257	SMG5	100	97.146	ENSCCAG00000027409	SMG5	100	97.146	Cebus_capucinus
ENSMICG00000002257	SMG5	100	97.441	ENSCATG00000030539	SMG5	100	97.441	Cercocebus_atys
ENSMICG00000002257	SMG5	100	95.972	ENSCLAG00000003983	SMG5	100	95.972	Chinchilla_lanigera
ENSMICG00000002257	SMG5	100	97.343	ENSCSAG00000002120	SMG5	100	97.343	Chlorocebus_sabaeus
ENSMICG00000002257	SMG5	54	92.701	ENSCHOG00000008741	-	57	92.701	Choloepus_hoffmanni
ENSMICG00000002257	SMG5	93	77.970	ENSCPBG00000025848	SMG5	100	78.499	Chrysemys_picta_bellii
ENSMICG00000002257	SMG5	93	34.881	ENSCING00000008706	-	99	34.711	Ciona_intestinalis
ENSMICG00000002257	SMG5	100	93.307	ENSCANG00000029208	SMG5	100	93.307	Colobus_angolensis_palliatus
ENSMICG00000002257	SMG5	100	93.124	ENSCGRG00001006336	Smg5	100	92.829	Cricetulus_griseus_chok1gshd
ENSMICG00000002257	SMG5	98	93.058	ENSCGRG00000005111	Smg5	100	92.749	Cricetulus_griseus_crigri
ENSMICG00000002257	SMG5	99	65.882	ENSCSEG00000014220	smg5	92	78.333	Cynoglossus_semilaevis
ENSMICG00000002257	SMG5	99	60.721	ENSCVAG00000000529	smg5	99	61.224	Cyprinodon_variegatus
ENSMICG00000002257	SMG5	100	91.732	ENSDNOG00000000051	SMG5	100	91.732	Dasypus_novemcinctus
ENSMICG00000002257	SMG5	92	36.809	ENSDNOG00000039862	-	100	36.229	Dasypus_novemcinctus
ENSMICG00000002257	SMG5	100	94.401	ENSDORG00000010382	Smg5	100	93.713	Dipodomys_ordii
ENSMICG00000002257	SMG5	66	35.484	FBgn0019890	Smg5	62	35.484	Drosophila_melanogaster
ENSMICG00000002257	SMG5	82	97.087	ENSETEG00000010336	SMG5	82	97.297	Echinops_telfairi
ENSMICG00000002257	SMG5	90	46.652	ENSEBUG00000003739	smg5	98	46.971	Eptatretus_burgeri
ENSMICG00000002257	SMG5	100	96.654	ENSEASG00005019122	SMG5	100	96.654	Equus_asinus_asinus
ENSMICG00000002257	SMG5	100	96.654	ENSECAG00000001389	SMG5	100	96.654	Equus_caballus
ENSMICG00000002257	SMG5	72	98.559	ENSEEUG00000012690	SMG5	73	98.559	Erinaceus_europaeus
ENSMICG00000002257	SMG5	99	65.092	ENSELUG00000012585	smg5	99	65.537	Esox_lucius
ENSMICG00000002257	SMG5	100	94.094	ENSFCAG00000011783	SMG5	100	93.314	Felis_catus
ENSMICG00000002257	SMG5	58	82.274	ENSFALG00000001166	-	99	82.383	Ficedula_albicollis
ENSMICG00000002257	SMG5	98	93.152	ENSFDAG00000017388	SMG5	100	93.051	Fukomys_damarensis
ENSMICG00000002257	SMG5	97	62.034	ENSFHEG00000013939	smg5	95	68.070	Fundulus_heteroclitus
ENSMICG00000002257	SMG5	99	61.867	ENSGMOG00000007310	smg5	92	76.905	Gadus_morhua
ENSMICG00000002257	SMG5	99	77.917	ENSGALG00000029918	-	100	77.524	Gallus_gallus
ENSMICG00000002257	SMG5	100	80.057	ENSGAGG00000016131	SMG5	100	79.487	Gopherus_agassizii
ENSMICG00000002257	SMG5	100	97.343	ENSGGOG00000010932	SMG5	100	97.343	Gorilla_gorilla
ENSMICG00000002257	SMG5	99	64.683	ENSHBUG00000008654	smg5	99	65.777	Haplochromis_burtoni
ENSMICG00000002257	SMG5	100	92.829	ENSHGLG00000019152	SMG5	100	93.026	Heterocephalus_glaber_female
ENSMICG00000002257	SMG5	90	92.982	ENSHGLG00100015948	SMG5	99	93.202	Heterocephalus_glaber_male
ENSMICG00000002257	SMG5	86	73.594	ENSHCOG00000010229	smg5	83	80.952	Hippocampus_comes
ENSMICG00000002257	SMG5	50	59.369	ENSIPUG00000006624	Smg5	99	62.318	Ictalurus_punctatus
ENSMICG00000002257	SMG5	100	96.559	ENSSTOG00000001780	SMG5	100	96.559	Ictidomys_tridecemlineatus
ENSMICG00000002257	SMG5	100	92.836	ENSJJAG00000022763	Smg5	100	92.542	Jaculus_jaculus
ENSMICG00000002257	SMG5	50	58.242	ENSKMAG00000014586	smg5	99	61.354	Kryptolebias_marmoratus
ENSMICG00000002257	SMG5	99	65.924	ENSLBEG00000002145	smg5	99	66.344	Labrus_bergylta
ENSMICG00000002257	SMG5	100	64.633	ENSLACG00000010521	SMG5	100	64.728	Latimeria_chalumnae
ENSMICG00000002257	SMG5	96	78.638	ENSLOCG00000008380	smg5	92	78.673	Lepisosteus_oculatus
ENSMICG00000002257	SMG5	100	94.587	ENSLAFG00000006241	SMG5	100	94.587	Loxodonta_africana
ENSMICG00000002257	SMG5	100	97.343	ENSMFAG00000045357	SMG5	100	97.343	Macaca_fascicularis
ENSMICG00000002257	SMG5	100	97.244	ENSMMUG00000000090	SMG5	100	97.244	Macaca_mulatta
ENSMICG00000002257	SMG5	100	97.244	ENSMNEG00000044425	SMG5	100	97.244	Macaca_nemestrina
ENSMICG00000002257	SMG5	100	91.078	ENSMLEG00000041192	SMG5	100	91.078	Mandrillus_leucophaeus
ENSMICG00000002257	SMG5	99	61.807	ENSMAMG00000010683	smg5	58	55.935	Mastacembelus_armatus
ENSMICG00000002257	SMG5	99	63.636	ENSMZEG00005015815	smg5	99	64.909	Maylandia_zebra
ENSMICG00000002257	SMG5	63	58.559	ENSMZEG00005016543	smg5	100	59.337	Maylandia_zebra
ENSMICG00000002257	SMG5	100	92.043	ENSMAUG00000010381	Smg5	100	91.847	Mesocricetus_auratus
ENSMICG00000002257	SMG5	55	45.819	ENSMAUG00000000043	-	96	44.792	Mesocricetus_auratus
ENSMICG00000002257	SMG5	100	92.059	ENSMOCG00000016590	Smg5	100	91.471	Microtus_ochrogaster
ENSMICG00000002257	SMG5	99	58.571	ENSMMOG00000017199	smg5	99	59.730	Mola_mola
ENSMICG00000002257	SMG5	75	39.370	ENSMODG00000004735	-	86	39.467	Monodelphis_domestica
ENSMICG00000002257	SMG5	78	37.531	ENSMODG00000010675	-	84	37.666	Monodelphis_domestica
ENSMICG00000002257	SMG5	97	34.558	ENSMODG00000004511	-	99	33.927	Monodelphis_domestica
ENSMICG00000002257	SMG5	87	90.090	ENSMODG00000016901	SMG5	98	90.541	Monodelphis_domestica
ENSMICG00000002257	SMG5	93	37.317	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSMICG00000002257	SMG5	100	92.927	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSMICG00000002257	SMG5	100	93.026	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSMICG00000002257	SMG5	100	92.934	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSMICG00000002257	SMG5	100	92.829	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSMICG00000002257	SMG5	93	92.842	ENSMPUG00000004546	SMG5	100	92.105	Mustela_putorius_furo
ENSMICG00000002257	SMG5	100	94.618	ENSMLUG00000008518	SMG5	100	93.738	Myotis_lucifugus
ENSMICG00000002257	SMG5	100	92.330	ENSNGAG00000020706	Smg5	100	93.314	Nannospalax_galili
ENSMICG00000002257	SMG5	98	45.035	ENSNGAG00000012101	-	98	44.810	Nannospalax_galili
ENSMICG00000002257	SMG5	96	63.015	ENSNBRG00000004332	smg5	98	64.242	Neolamprologus_brichardi
ENSMICG00000002257	SMG5	100	97.146	ENSNLEG00000012439	SMG5	100	97.146	Nomascus_leucogenys
ENSMICG00000002257	SMG5	100	88.102	ENSMEUG00000012834	SMG5	100	87.217	Notamacropus_eugenii
ENSMICG00000002257	SMG5	100	94.587	ENSOPRG00000009152	SMG5	100	94.587	Ochotona_princeps
ENSMICG00000002257	SMG5	100	95.177	ENSODEG00000012237	SMG5	100	95.177	Octodon_degus
ENSMICG00000002257	SMG5	98	95.766	ENSOCUG00000012886	SMG5	100	95.766	Oryctolagus_cuniculus
ENSMICG00000002257	SMG5	89	41.712	ENSOCUG00000023338	-	99	40.944	Oryctolagus_cuniculus
ENSMICG00000002257	SMG5	99	64.516	ENSORLG00020013127	smg5	99	65.625	Oryzias_latipes_hni
ENSMICG00000002257	SMG5	99	64.362	ENSORLG00015019014	smg5	99	65.433	Oryzias_latipes_hsok
ENSMICG00000002257	SMG5	82	60.086	ENSOMEG00000021330	smg5	92	60.649	Oryzias_melastigma
ENSMICG00000002257	SMG5	100	95.768	ENSOGAG00000004966	SMG5	100	95.768	Otolemur_garnettii
ENSMICG00000002257	SMG5	99	44.596	ENSOARG00000011963	-	99	43.817	Ovis_aries
ENSMICG00000002257	SMG5	100	95.669	ENSOARG00000005778	SMG5	100	95.669	Ovis_aries
ENSMICG00000002257	SMG5	100	97.244	ENSPPAG00000011996	SMG5	100	97.244	Pan_paniscus
ENSMICG00000002257	SMG5	98	93.851	ENSPPRG00000011901	SMG5	100	93.044	Panthera_pardus
ENSMICG00000002257	SMG5	99	85.871	ENSPTIG00000007892	SMG5	98	85.729	Panthera_tigris_altaica
ENSMICG00000002257	SMG5	100	97.441	ENSPTRG00000049282	-	100	97.441	Pan_troglodytes
ENSMICG00000002257	SMG5	100	97.441	ENSPTRG00000023925	SMG5	100	97.441	Pan_troglodytes
ENSMICG00000002257	SMG5	100	97.441	ENSPANG00000011201	SMG5	100	97.441	Papio_anubis
ENSMICG00000002257	SMG5	99	65.092	ENSPKIG00000009402	smg5	99	66.112	Paramormyrops_kingsleyae
ENSMICG00000002257	SMG5	98	80.735	ENSPSIG00000015198	SMG5	100	80.476	Pelodiscus_sinensis
ENSMICG00000002257	SMG5	99	61.418	ENSPMGG00000010465	smg5	99	60.424	Periophthalmus_magnuspinnatus
ENSMICG00000002257	SMG5	56	46.667	ENSPEMG00000010022	-	95	45.361	Peromyscus_maniculatus_bairdii
ENSMICG00000002257	SMG5	100	93.517	ENSPEMG00000001819	Smg5	100	93.222	Peromyscus_maniculatus_bairdii
ENSMICG00000002257	SMG5	99	49.471	ENSPMAG00000000410	smg5	100	49.668	Petromyzon_marinus
ENSMICG00000002257	SMG5	100	89.587	ENSPCIG00000018938	SMG5	100	89.980	Phascolarctos_cinereus
ENSMICG00000002257	SMG5	50	60.223	ENSPFOG00000010191	smg5	99	62.264	Poecilia_formosa
ENSMICG00000002257	SMG5	50	59.108	ENSPLAG00000009332	smg5	99	62.084	Poecilia_latipinna
ENSMICG00000002257	SMG5	99	65.800	ENSPMEG00000014105	smg5	99	65.580	Poecilia_mexicana
ENSMICG00000002257	SMG5	93	70.139	ENSPREG00000017713	smg5	99	61.905	Poecilia_reticulata
ENSMICG00000002257	SMG5	100	97.539	ENSPPYG00000000723	SMG5	100	97.539	Pongo_abelii
ENSMICG00000002257	SMG5	75	96.685	ENSPCAG00000008412	SMG5	88	85.232	Procavia_capensis
ENSMICG00000002257	SMG5	100	98.622	ENSPCOG00000004741	SMG5	100	98.622	Propithecus_coquereli
ENSMICG00000002257	SMG5	100	86.220	ENSPVAG00000016748	SMG5	100	86.220	Pteropus_vampyrus
ENSMICG00000002257	SMG5	99	59.859	ENSPNYG00000013397	smg5	99	61.136	Pundamilia_nyererei
ENSMICG00000002257	SMG5	100	92.927	ENSRNOG00000019590	Smg5	100	92.633	Rattus_norvegicus
ENSMICG00000002257	SMG5	100	97.146	ENSRBIG00000027428	SMG5	100	97.146	Rhinopithecus_bieti
ENSMICG00000002257	SMG5	100	97.047	ENSRROG00000030035	SMG5	100	97.047	Rhinopithecus_roxellana
ENSMICG00000002257	SMG5	100	97.343	ENSSBOG00000033339	SMG5	100	97.343	Saimiri_boliviensis_boliviensis
ENSMICG00000002257	SMG5	64	39.181	ENSSHAG00000000935	-	82	40.244	Sarcophilus_harrisii
ENSMICG00000002257	SMG5	99	33.915	ENSSHAG00000009572	-	80	42.752	Sarcophilus_harrisii
ENSMICG00000002257	SMG5	86	40.157	ENSSHAG00000000561	-	87	40.157	Sarcophilus_harrisii
ENSMICG00000002257	SMG5	98	89.089	ENSSHAG00000014163	SMG5	100	89.489	Sarcophilus_harrisii
ENSMICG00000002257	SMG5	99	66.472	ENSSFOG00015024175	smg5	99	66.178	Scleropages_formosus
ENSMICG00000002257	SMG5	99	60.498	ENSSMAG00000013059	smg5	92	78.673	Scophthalmus_maximus
ENSMICG00000002257	SMG5	50	59.854	ENSSDUG00000007122	smg5	92	77.412	Seriola_dumerili
ENSMICG00000002257	SMG5	97	60.335	ENSSLDG00000011418	smg5	96	61.294	Seriola_lalandi_dorsalis
ENSMICG00000002257	SMG5	90	81.243	ENSSARG00000012484	SMG5	100	81.243	Sorex_araneus
ENSMICG00000002257	SMG5	93	77.812	ENSSPUG00000002260	SMG5	100	76.900	Sphenodon_punctatus
ENSMICG00000002257	SMG5	91	77.123	ENSSPAG00000014266	smg5	98	65.175	Stegastes_partitus
ENSMICG00000002257	SMG5	99	75.074	ENSSSCG00000039308	-	100	75.271	Sus_scrofa
ENSMICG00000002257	SMG5	52	37.853	ENSSSCG00000037182	-	85	37.262	Sus_scrofa
ENSMICG00000002257	SMG5	100	97.343	ENSSSCG00000006490	-	100	97.368	Sus_scrofa
ENSMICG00000002257	SMG5	99	80.712	ENSTGUG00000003748	-	100	80.469	Taeniopygia_guttata
ENSMICG00000002257	SMG5	93	75.406	ENSTRUG00000012580	smg5	92	76.347	Takifugu_rubripes
ENSMICG00000002257	SMG5	99	65.112	ENSTNIG00000010303	smg5	99	64.981	Tetraodon_nigroviridis
ENSMICG00000002257	SMG5	60	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSMICG00000002257	SMG5	100	91.634	ENSTTRG00000001401	SMG5	100	91.634	Tursiops_truncatus
ENSMICG00000002257	SMG5	100	93.602	ENSUAMG00000013721	SMG5	100	92.913	Ursus_americanus
ENSMICG00000002257	SMG5	98	89.246	ENSUMAG00000018041	SMG5	99	86.779	Ursus_maritimus
ENSMICG00000002257	SMG5	98	86.882	ENSVPAG00000009446	SMG5	99	86.882	Vicugna_pacos
ENSMICG00000002257	SMG5	100	94.685	ENSVVUG00000005887	SMG5	100	93.996	Vulpes_vulpes
ENSMICG00000002257	SMG5	77	65.700	ENSXETG00000033791	SMG5	99	64.943	Xenopus_tropicalis
ENSMICG00000002257	SMG5	99	65.825	ENSXMAG00000013499	smg5	99	65.634	Xiphophorus_maculatus