EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMICG00000004900 (Gene tree)
Gene ID: 105859803
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Plus strand
Length: 21989 bases
Position: chr20:54166326-54188314
Accession: 105859803
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000049846	HVSL	PF09749.9	3.3e-65	1	1
ENSMICP00000004466	HVSL	PF09749.9	3.5e-53	1	2
ENSMICP00000004466	HVSL	PF09749.9	3.5e-53	2	2
ENSMICP00000025514	HVSL	PF09749.9	2.1e-29	1	1
ENSMICP00000042060	HVSL	PF09749.9	5.7e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000040484	USB1-203	477	-	ENSMICP00000025514	158 (aa)	-	UPI000C2EAD71
ENSMICT00000068526	USB1-204	519	XM_012743972	ENSMICP00000042060	173 (aa)	XP_012599426	UPI000C2EA62B
ENSMICT00000004899	USB1-202	744	-	ENSMICP00000004466	247 (aa)	-	UPI00085B00F9
ENSMICT00000060986	USB1-201	2319	XM_012743968	ENSMICP00000049846	265 (aa)	XP_012599422	UPI0001772AC5

Gene Model

Click here to download ENSMICG00000004900's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000004900's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000004900	USB1	100	89.811	ENSG00000103005	USB1	100	90.187	Homo_sapiens
ENSMICG00000004900	USB1	98	47.670	ENSAPOG00000011942	usb1	81	52.863	Acanthochromis_polyacanthus
ENSMICG00000004900	USB1	100	85.130	ENSAMEG00000017205	USB1	100	83.271	Ailuropoda_melanoleuca
ENSMICG00000004900	USB1	85	54.425	ENSACIG00000012234	usb1	83	54.425	Amphilophus_citrinellus
ENSMICG00000004900	USB1	86	53.744	ENSAOCG00000014831	usb1	80	53.744	Amphiprion_ocellaris
ENSMICG00000004900	USB1	86	54.185	ENSAPEG00000000296	usb1	80	54.185	Amphiprion_percula
ENSMICG00000004900	USB1	95	50.199	ENSATEG00000009348	usb1	82	52.814	Anabas_testudineus
ENSMICG00000004900	USB1	85	70.485	ENSAPLG00000002756	USB1	100	70.925	Anas_platyrhynchos
ENSMICG00000004900	USB1	86	65.066	ENSACAG00000015481	USB1	100	65.066	Anolis_carolinensis
ENSMICG00000004900	USB1	100	89.873	ENSANAG00000035640	USB1	100	89.873	Aotus_nancymaae
ENSMICG00000004900	USB1	85	53.571	ENSACLG00000020586	usb1	79	53.571	Astatotilapia_calliptera
ENSMICG00000004900	USB1	85	51.111	ENSAMXG00000040146	usb1	75	51.111	Astyanax_mexicanus
ENSMICG00000004900	USB1	100	84.906	ENSBTAG00000015758	USB1	100	84.906	Bos_taurus
ENSMICG00000004900	USB1	100	91.139	ENSCJAG00000011733	USB1	100	91.139	Callithrix_jacchus
ENSMICG00000004900	USB1	99	81.985	ENSCAFG00000008556	USB1	73	81.618	Canis_familiaris
ENSMICG00000004900	USB1	99	83.396	ENSCAFG00020009263	USB1	99	83.396	Canis_lupus_dingo
ENSMICG00000004900	USB1	100	83.774	ENSCHIG00000024290	USB1	100	83.774	Capra_hircus
ENSMICG00000004900	USB1	100	91.321	ENSTSYG00000006997	USB1	100	91.321	Carlito_syrichta
ENSMICG00000004900	USB1	75	84.746	ENSCAPG00000009057	USB1	99	72.300	Cavia_aperea
ENSMICG00000004900	USB1	100	83.209	ENSCPOG00000014325	USB1	100	81.716	Cavia_porcellus
ENSMICG00000004900	USB1	100	90.189	ENSCCAG00000022132	USB1	100	90.189	Cebus_capucinus
ENSMICG00000004900	USB1	100	91.139	ENSCATG00000032174	USB1	100	91.139	Cercocebus_atys
ENSMICG00000004900	USB1	66	86.932	ENSCLAG00000007363	USB1	100	86.932	Chinchilla_lanigera
ENSMICG00000004900	USB1	100	90.566	ENSCSAG00000004783	USB1	100	90.566	Chlorocebus_sabaeus
ENSMICG00000004900	USB1	92	65.432	ENSCPBG00000026943	USB1	83	67.532	Chrysemys_picta_bellii
ENSMICG00000004900	USB1	84	31.535	ENSCING00000011490	-	86	31.535	Ciona_intestinalis
ENSMICG00000004900	USB1	100	89.434	ENSCANG00000037135	USB1	100	89.434	Colobus_angolensis_palliatus
ENSMICG00000004900	USB1	100	84.328	ENSCGRG00001011243	USB1	100	82.090	Cricetulus_griseus_chok1gshd
ENSMICG00000004900	USB1	100	84.328	ENSCGRG00000013252	USB1	100	82.090	Cricetulus_griseus_crigri
ENSMICG00000004900	USB1	99	47.909	ENSCSEG00000013881	usb1	83	50.649	Cynoglossus_semilaevis
ENSMICG00000004900	USB1	85	50.439	ENSCVAG00000009252	usb1	97	50.877	Cyprinodon_variegatus
ENSMICG00000004900	USB1	90	49.791	ENSDARG00000003841	usb1	81	51.339	Danio_rerio
ENSMICG00000004900	USB1	100	82.264	ENSDORG00000001888	Usb1	100	82.264	Dipodomys_ordii
ENSMICG00000004900	USB1	77	39.524	FBgn0037713	CG16790	78	39.524	Drosophila_melanogaster
ENSMICG00000004900	USB1	96	75.817	ENSETEG00000019682	USB1	100	70.037	Echinops_telfairi
ENSMICG00000004900	USB1	84	51.351	ENSEBUG00000005889	usb1	78	51.351	Eptatretus_burgeri
ENSMICG00000004900	USB1	100	87.547	ENSEASG00005005484	USB1	100	87.547	Equus_asinus_asinus
ENSMICG00000004900	USB1	100	87.170	ENSECAG00000019493	USB1	91	87.170	Equus_caballus
ENSMICG00000004900	USB1	100	60.000	ENSEEUG00000000154	USB1	66	76.705	Erinaceus_europaeus
ENSMICG00000004900	USB1	94	47.200	ENSELUG00000010974	usb1	84	49.561	Esox_lucius
ENSMICG00000004900	USB1	100	86.142	ENSFCAG00000002693	USB1	100	86.142	Felis_catus
ENSMICG00000004900	USB1	85	67.411	ENSFALG00000006876	USB1	84	67.411	Ficedula_albicollis
ENSMICG00000004900	USB1	100	85.393	ENSFDAG00000010052	USB1	100	85.019	Fukomys_damarensis
ENSMICG00000004900	USB1	92	45.122	ENSFHEG00000012334	usb1	77	53.608	Fundulus_heteroclitus
ENSMICG00000004900	USB1	84	51.570	ENSGMOG00000004228	usb1	99	51.570	Gadus_morhua
ENSMICG00000004900	USB1	84	68.304	ENSGALG00000035604	USB1	89	68.282	Gallus_gallus
ENSMICG00000004900	USB1	98	49.818	ENSGAFG00000021890	usb1	82	52.632	Gambusia_affinis
ENSMICG00000004900	USB1	85	52.679	ENSGACG00000003257	usb1	81	52.679	Gasterosteus_aculeatus
ENSMICG00000004900	USB1	100	63.504	ENSGAGG00000022572	USB1	100	60.440	Gopherus_agassizii
ENSMICG00000004900	USB1	100	90.566	ENSGGOG00000017147	USB1	100	90.566	Gorilla_gorilla
ENSMICG00000004900	USB1	86	53.744	ENSHBUG00000009823	usb1	81	53.744	Haplochromis_burtoni
ENSMICG00000004900	USB1	100	85.768	ENSHGLG00000016078	USB1	98	84.644	Heterocephalus_glaber_female
ENSMICG00000004900	USB1	100	85.768	ENSHGLG00100005562	USB1	98	84.644	Heterocephalus_glaber_male
ENSMICG00000004900	USB1	82	55.300	ENSHCOG00000015633	usb1	86	55.157	Hippocampus_comes
ENSMICG00000004900	USB1	97	48.828	ENSIPUG00000008601	usb1	78	54.018	Ictalurus_punctatus
ENSMICG00000004900	USB1	100	85.714	ENSSTOG00000007548	USB1	100	83.883	Ictidomys_tridecemlineatus
ENSMICG00000004900	USB1	100	86.142	ENSJJAG00000021859	Usb1	100	85.019	Jaculus_jaculus
ENSMICG00000004900	USB1	86	51.982	ENSKMAG00000007200	usb1	80	51.982	Kryptolebias_marmoratus
ENSMICG00000004900	USB1	75	51.759	ENSLBEG00000008452	usb1	64	52.632	Labrus_bergylta
ENSMICG00000004900	USB1	88	54.733	ENSLACG00000000105	USB1	72	60.766	Latimeria_chalumnae
ENSMICG00000004900	USB1	95	54.651	ENSLOCG00000000465	usb1	82	56.957	Lepisosteus_oculatus
ENSMICG00000004900	USB1	100	64.815	ENSLAFG00000002267	USB1	100	63.704	Loxodonta_africana
ENSMICG00000004900	USB1	100	91.772	ENSMFAG00000003926	USB1	100	91.772	Macaca_fascicularis
ENSMICG00000004900	USB1	100	90.189	ENSMMUG00000022669	USB1	100	90.189	Macaca_mulatta
ENSMICG00000004900	USB1	100	91.772	ENSMNEG00000042487	USB1	100	91.772	Macaca_nemestrina
ENSMICG00000004900	USB1	100	91.772	ENSMLEG00000028756	USB1	100	91.772	Mandrillus_leucophaeus
ENSMICG00000004900	USB1	98	49.281	ENSMAMG00000015092	usb1	80	54.018	Mastacembelus_armatus
ENSMICG00000004900	USB1	85	53.571	ENSMZEG00005010008	usb1	80	53.571	Maylandia_zebra
ENSMICG00000004900	USB1	100	84.270	ENSMAUG00000007832	Usb1	100	83.521	Mesocricetus_auratus
ENSMICG00000004900	USB1	100	83.146	ENSMOCG00000022647	Usb1	100	82.397	Microtus_ochrogaster
ENSMICG00000004900	USB1	86	52.632	ENSMMOG00000000490	usb1	88	52.632	Mola_mola
ENSMICG00000004900	USB1	100	66.045	ENSMODG00000014067	USB1	100	64.925	Monodelphis_domestica
ENSMICG00000004900	USB1	95	50.598	ENSMALG00000005930	usb1	80	54.185	Monopterus_albus
ENSMICG00000004900	USB1	100	81.273	MGP_CAROLIEiJ_G0031421	Usb1	100	84.956	Mus_caroli
ENSMICG00000004900	USB1	100	81.273	ENSMUSG00000031792	Usb1	100	85.841	Mus_musculus
ENSMICG00000004900	USB1	100	81.273	MGP_PahariEiJ_G0023019	Usb1	100	86.325	Mus_pahari
ENSMICG00000004900	USB1	100	80.150	MGP_SPRETEiJ_G0032540	Usb1	100	79.401	Mus_spretus
ENSMICG00000004900	USB1	100	83.271	ENSMPUG00000004684	USB1	96	82.528	Mustela_putorius_furo
ENSMICG00000004900	USB1	87	89.610	ENSMLUG00000007400	USB1	100	89.610	Myotis_lucifugus
ENSMICG00000004900	USB1	100	83.271	ENSNGAG00000009703	Usb1	100	82.528	Nannospalax_galili
ENSMICG00000004900	USB1	87	52.093	ENSNBRG00000008747	usb1	99	53.960	Neolamprologus_brichardi
ENSMICG00000004900	USB1	100	88.608	ENSNLEG00000003340	USB1	99	90.361	Nomascus_leucogenys
ENSMICG00000004900	USB1	94	59.615	ENSMEUG00000003328	-	71	70.370	Notamacropus_eugenii
ENSMICG00000004900	USB1	75	80.508	ENSOPRG00000011803	USB1	99	60.606	Ochotona_princeps
ENSMICG00000004900	USB1	100	82.397	ENSODEG00000016214	USB1	100	81.648	Octodon_degus
ENSMICG00000004900	USB1	98	48.070	ENSONIG00000011063	usb1	81	53.744	Oreochromis_niloticus
ENSMICG00000004900	USB1	85	73.333	ENSOANG00000012118	USB1	94	73.333	Ornithorhynchus_anatinus
ENSMICG00000004900	USB1	93	46.693	ENSORLG00000012479	usb1	82	51.339	Oryzias_latipes
ENSMICG00000004900	USB1	93	46.304	ENSORLG00020018671	usb1	82	51.339	Oryzias_latipes_hni
ENSMICG00000004900	USB1	93	46.693	ENSORLG00015009679	usb1	83	51.339	Oryzias_latipes_hsok
ENSMICG00000004900	USB1	85	51.786	ENSOMEG00000012930	usb1	81	51.786	Oryzias_melastigma
ENSMICG00000004900	USB1	100	92.713	ENSOGAG00000003273	USB1	100	92.713	Otolemur_garnettii
ENSMICG00000004900	USB1	95	82.213	ENSOARG00000001107	USB1	89	84.848	Ovis_aries
ENSMICG00000004900	USB1	100	90.189	ENSPPAG00000042137	USB1	100	90.189	Pan_paniscus
ENSMICG00000004900	USB1	100	86.142	ENSPPRG00000024797	USB1	100	86.142	Panthera_pardus
ENSMICG00000004900	USB1	100	86.142	ENSPTIG00000007506	USB1	100	86.142	Panthera_tigris_altaica
ENSMICG00000004900	USB1	100	89.474	ENSPTRG00000008172	USB1	100	91.121	Pan_troglodytes
ENSMICG00000004900	USB1	100	91.772	ENSPANG00000025138	USB1	100	91.772	Papio_anubis
ENSMICG00000004900	USB1	84	56.054	ENSPKIG00000015109	usb1	75	56.054	Paramormyrops_kingsleyae
ENSMICG00000004900	USB1	85	52.444	ENSPSIG00000004305	USB1	100	52.915	Pelodiscus_sinensis
ENSMICG00000004900	USB1	85	52.444	ENSPMGG00000017725	usb1	86	52.444	Periophthalmus_magnuspinnatus
ENSMICG00000004900	USB1	100	82.353	ENSPEMG00000016183	Usb1	100	80.515	Peromyscus_maniculatus_bairdii
ENSMICG00000004900	USB1	88	51.064	ENSPMAG00000000462	usb1	95	52.212	Petromyzon_marinus
ENSMICG00000004900	USB1	98	48.014	ENSPFOG00000011130	usb1	82	52.193	Poecilia_formosa
ENSMICG00000004900	USB1	98	48.014	ENSPLAG00000009820	usb1	82	52.193	Poecilia_latipinna
ENSMICG00000004900	USB1	98	48.014	ENSPMEG00000006402	usb1	82	52.193	Poecilia_mexicana
ENSMICG00000004900	USB1	91	46.154	ENSPREG00000001047	usb1	78	54.124	Poecilia_reticulata
ENSMICG00000004900	USB1	96	86.842	ENSPPYG00000007401	USB1	100	86.905	Pongo_abelii
ENSMICG00000004900	USB1	100	95.094	ENSPCOG00000022612	USB1	100	95.094	Propithecus_coquereli
ENSMICG00000004900	USB1	100	83.396	ENSPVAG00000004613	USB1	100	83.019	Pteropus_vampyrus
ENSMICG00000004900	USB1	98	48.679	ENSPNYG00000022262	usb1	81	53.744	Pundamilia_nyererei
ENSMICG00000004900	USB1	98	44.710	ENSPNAG00000011736	usb1	99	44.369	Pygocentrus_nattereri
ENSMICG00000004900	USB1	100	83.146	ENSRNOG00000013216	Usb1	100	82.397	Rattus_norvegicus
ENSMICG00000004900	USB1	100	91.139	ENSRBIG00000044466	USB1	100	91.589	Rhinopithecus_bieti
ENSMICG00000004900	USB1	100	91.139	ENSRROG00000029211	USB1	100	91.139	Rhinopithecus_roxellana
ENSMICG00000004900	USB1	100	89.434	ENSSBOG00000029362	USB1	100	89.434	Saimiri_boliviensis_boliviensis
ENSMICG00000004900	USB1	83	72.146	ENSSHAG00000006993	USB1	91	70.563	Sarcophilus_harrisii
ENSMICG00000004900	USB1	87	58.442	ENSSFOG00015023663	usb1	71	59.031	Scleropages_formosus
ENSMICG00000004900	USB1	98	48.913	ENSSMAG00000015834	usb1	80	52.101	Scophthalmus_maximus
ENSMICG00000004900	USB1	85	55.310	ENSSDUG00000002949	usb1	84	55.310	Seriola_dumerili
ENSMICG00000004900	USB1	85	55.357	ENSSLDG00000014174	usb1	80	55.357	Seriola_lalandi_dorsalis
ENSMICG00000004900	USB1	81	68.224	ENSSPUG00000006741	USB1	100	68.224	Sphenodon_punctatus
ENSMICG00000004900	USB1	98	46.643	ENSSPAG00000007484	usb1	99	45.230	Stegastes_partitus
ENSMICG00000004900	USB1	100	84.015	ENSSSCG00000002807	USB1	100	82.528	Sus_scrofa
ENSMICG00000004900	USB1	80	69.340	ENSTGUG00000004792	USB1	87	68.018	Taeniopygia_guttata
ENSMICG00000004900	USB1	98	49.071	ENSTRUG00000021069	usb1	86	50.649	Takifugu_rubripes
ENSMICG00000004900	USB1	98	47.308	ENSTNIG00000000626	usb1	84	49.558	Tetraodon_nigroviridis
ENSMICG00000004900	USB1	88	60.776	ENSTBEG00000001507	USB1	99	60.606	Tupaia_belangeri
ENSMICG00000004900	USB1	100	84.758	ENSUAMG00000016823	USB1	100	84.758	Ursus_americanus
ENSMICG00000004900	USB1	81	87.383	ENSUMAG00000021369	USB1	100	87.383	Ursus_maritimus
ENSMICG00000004900	USB1	96	50.993	ENSVPAG00000009834	-	59	86.667	Vicugna_pacos
ENSMICG00000004900	USB1	99	82.463	ENSVVUG00000023700	USB1	89	87.391	Vulpes_vulpes
ENSMICG00000004900	USB1	82	56.422	ENSXETG00000013795	usb1	92	55.411	Xenopus_tropicalis
ENSMICG00000004900	USB1	94	50.000	ENSXMAG00000024687	usb1	67	52.632	Xiphophorus_maculatus