EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMICG00000005900 (Gene tree)
Gene ID: 105857618
Gene Symbol: -
Alias: -
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Plus strand
Length: 117908 bases
Position: chr8:89253951-89371858
Accession: 105857618
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000027952	R3H	PF01424.22	4.7e-11	1	1
ENSMICP00000005397	R3H	PF01424.22	5.3e-11	1	1
ENSMICP00000036675	R3H	PF01424.22	5.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000037629	-	2928	XM_012740082	ENSMICP00000027952	975 (aa)	XP_012595536	UPI00085B1A45
ENSMICT00000043121	-	1278	-	ENSMICP00000027017	425 (aa)	-	UPI000C2EBF24
ENSMICT00000005914	-	3147	-	ENSMICP00000005397	1048 (aa)	-	UPI00085B333F
ENSMICT00000033537	-	4321	XM_012740075	ENSMICP00000036675	1104 (aa)	XP_012595529	UPI00064360DF

Gene Model

Click here to download ENSMICG00000005900's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000005900's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMICG00000005900	-	95	96.224	ENSMICG00000042655	-	100	96.224
ENSMICG00000005900	-	96	50.771	ENSMICG00000012389	R3HDM2	94	57.702
ENSMICG00000005900	-	70	51.114	ENSMICG00000049108	ARPP21	95	50.743

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000005900	-	100	94.280	ENSG00000048991	R3HDM1	99	96.907	Homo_sapiens
ENSMICG00000005900	-	88	63.200	ENSAPOG00000020850	r3hdm1	92	63.200	Acanthochromis_polyacanthus
ENSMICG00000005900	-	100	94.299	ENSAMEG00000014886	R3HDM1	100	94.299	Ailuropoda_melanoleuca
ENSMICG00000005900	-	87	58.333	ENSAOCG00000005192	r3hdm1	95	58.333	Amphiprion_ocellaris
ENSMICG00000005900	-	87	62.933	ENSAPEG00000016108	r3hdm1	95	62.933	Amphiprion_percula
ENSMICG00000005900	-	87	63.172	ENSATEG00000000232	r3hdm1	82	63.172	Anabas_testudineus
ENSMICG00000005900	-	100	77.568	ENSAPLG00000015231	R3HDM1	100	77.658	Anas_platyrhynchos
ENSMICG00000005900	-	100	75.829	ENSACAG00000001676	R3HDM1	100	76.614	Anolis_carolinensis
ENSMICG00000005900	-	100	94.394	ENSANAG00000035334	R3HDM1	100	94.394	Aotus_nancymaae
ENSMICG00000005900	-	87	61.867	ENSACLG00000027282	r3hdm1	94	61.867	Astatotilapia_calliptera
ENSMICG00000005900	-	88	79.747	ENSAMXG00000012861	R3HDM1	100	59.615	Astyanax_mexicanus
ENSMICG00000005900	-	60	40.202	ENSAMXG00000020587	arpp21	62	47.113	Astyanax_mexicanus
ENSMICG00000005900	-	88	74.684	ENSAMXG00000003536	r3hdm1	91	73.156	Astyanax_mexicanus
ENSMICG00000005900	-	100	91.436	ENSBTAG00000013302	R3HDM1	100	90.957	Bos_taurus
ENSMICG00000005900	-	100	94.027	ENSCJAG00000011718	R3HDM1	100	94.027	Callithrix_jacchus
ENSMICG00000005900	-	100	94.570	ENSCAFG00000005075	R3HDM1	100	94.570	Canis_familiaris
ENSMICG00000005900	-	100	94.656	ENSCAFG00020016119	R3HDM1	100	94.656	Canis_lupus_dingo
ENSMICG00000005900	-	100	93.394	ENSCHIG00000020851	R3HDM1	100	93.394	Capra_hircus
ENSMICG00000005900	-	100	88.860	ENSCPOG00000012784	R3HDM1	100	94.093	Cavia_porcellus
ENSMICG00000005900	-	100	94.566	ENSCCAG00000027199	R3HDM1	100	94.566	Cebus_capucinus
ENSMICG00000005900	-	100	95.580	ENSCATG00000023642	R3HDM1	100	94.027	Cercocebus_atys
ENSMICG00000005900	-	100	89.025	ENSCLAG00000007962	R3HDM1	100	95.267	Chinchilla_lanigera
ENSMICG00000005900	-	100	90.289	ENSCSAG00000016356	R3HDM1	100	91.220	Chlorocebus_sabaeus
ENSMICG00000005900	-	80	93.939	ENSCHOG00000013638	R3HDM1	81	94.118	Choloepus_hoffmanni
ENSMICG00000005900	-	91	90.775	ENSCPBG00000009645	R3HDM1	100	90.775	Chrysemys_picta_bellii
ENSMICG00000005900	-	100	93.852	ENSCANG00000034748	R3HDM1	100	93.852	Colobus_angolensis_palliatus
ENSMICG00000005900	-	99	87.930	ENSCGRG00001012357	R3hdm1	97	87.930	Cricetulus_griseus_chok1gshd
ENSMICG00000005900	-	99	90.554	ENSCGRG00000012080	R3hdm1	100	94.033	Cricetulus_griseus_crigri
ENSMICG00000005900	-	81	65.246	ENSCSEG00000008944	r3hdm1	82	65.246	Cynoglossus_semilaevis
ENSMICG00000005900	-	87	60.800	ENSCVAG00000007582	r3hdm1	91	60.800	Cyprinodon_variegatus
ENSMICG00000005900	-	100	89.379	ENSDNOG00000000771	R3HDM1	100	89.469	Dasypus_novemcinctus
ENSMICG00000005900	-	100	82.172	ENSETEG00000013606	R3HDM1	100	82.443	Echinops_telfairi
ENSMICG00000005900	-	65	42.933	ENSEBUG00000014746	arpp21	99	43.769	Eptatretus_burgeri
ENSMICG00000005900	-	100	96.685	ENSEASG00005007392	R3HDM1	100	93.931	Equus_asinus_asinus
ENSMICG00000005900	-	99	96.685	ENSECAG00000019114	R3HDM1	100	94.112	Equus_caballus
ENSMICG00000005900	-	91	85.424	ENSEEUG00000012589	R3HDM1	91	85.055	Erinaceus_europaeus
ENSMICG00000005900	-	90	79.851	ENSELUG00000014413	r3hdm1	87	78.339	Esox_lucius
ENSMICG00000005900	-	83	77.346	ENSELUG00000004909	R3HDM1	99	54.469	Esox_lucius
ENSMICG00000005900	-	100	96.961	ENSFCAG00000027113	R3HDM1	100	94.027	Felis_catus
ENSMICG00000005900	-	74	71.944	ENSFALG00000013731	R3HDM1	86	74.201	Ficedula_albicollis
ENSMICG00000005900	-	100	88.772	ENSFDAG00000016478	R3HDM1	100	95.267	Fukomys_damarensis
ENSMICG00000005900	-	87	56.863	ENSFHEG00000018713	r3hdm1	90	61.600	Fundulus_heteroclitus
ENSMICG00000005900	-	60	64.348	ENSGMOG00000006042	-	74	64.348	Gadus_morhua
ENSMICG00000005900	-	88	85.294	ENSGALG00000012246	R3HDM1	99	85.246	Gallus_gallus
ENSMICG00000005900	-	87	61.008	ENSGAFG00000006203	r3hdm1	95	61.008	Gambusia_affinis
ENSMICG00000005900	-	86	68.269	ENSGACG00000014925	r3hdm1	92	68.269	Gasterosteus_aculeatus
ENSMICG00000005900	-	99	82.535	ENSGAGG00000007840	R3HDM1	100	76.826	Gopherus_agassizii
ENSMICG00000005900	-	100	93.899	ENSGGOG00000008156	R3HDM1	100	93.899	Gorilla_gorilla
ENSMICG00000005900	-	100	89.367	ENSHGLG00000015718	R3HDM1	100	95.062	Heterocephalus_glaber_female
ENSMICG00000005900	-	100	69.050	ENSHGLG00100015374	-	100	69.050	Heterocephalus_glaber_male
ENSMICG00000005900	-	100	89.192	ENSHGLG00100003184	-	100	95.062	Heterocephalus_glaber_male
ENSMICG00000005900	-	87	59.299	ENSHCOG00000013366	r3hdm1	91	60.108	Hippocampus_comes
ENSMICG00000005900	-	89	68.615	ENSIPUG00000013629	r3hdm1	94	70.288	Ictalurus_punctatus
ENSMICG00000005900	-	87	68.633	ENSIPUG00000001676	R3HDM1	99	66.029	Ictalurus_punctatus
ENSMICG00000005900	-	100	94.027	ENSSTOG00000007572	R3HDM1	100	96.296	Ictidomys_tridecemlineatus
ENSMICG00000005900	-	97	69.646	ENSLACG00000005334	R3HDM1	100	70.136	Latimeria_chalumnae
ENSMICG00000005900	-	100	68.765	ENSLOCG00000001641	r3hdm1	100	65.160	Lepisosteus_oculatus
ENSMICG00000005900	-	100	90.422	ENSLAFG00000009065	R3HDM1	100	90.422	Loxodonta_africana
ENSMICG00000005900	-	100	94.208	ENSMFAG00000030331	R3HDM1	100	96.552	Macaca_fascicularis
ENSMICG00000005900	-	100	93.931	ENSMMUG00000009844	R3HDM1	100	93.931	Macaca_mulatta
ENSMICG00000005900	-	100	94.027	ENSMNEG00000027793	R3HDM1	100	96.552	Macaca_nemestrina
ENSMICG00000005900	-	100	94.299	ENSMLEG00000043189	R3HDM1	100	94.299	Mandrillus_leucophaeus
ENSMICG00000005900	-	87	62.466	ENSMAMG00000004532	r3hdm1	92	58.812	Mastacembelus_armatus
ENSMICG00000005900	-	87	61.867	ENSMZEG00005003157	r3hdm1	95	57.353	Maylandia_zebra
ENSMICG00000005900	-	100	76.916	ENSMGAG00000012461	R3HDM1	100	76.826	Meleagris_gallopavo
ENSMICG00000005900	-	100	87.828	ENSMAUG00000010315	R3hdm1	100	93.416	Mesocricetus_auratus
ENSMICG00000005900	-	90	76.777	ENSMODG00000000923	R3HDM1	97	76.565	Monodelphis_domestica
ENSMICG00000005900	-	99	57.816	ENSMALG00000009000	r3hdm1	91	57.816	Monopterus_albus
ENSMICG00000005900	-	100	87.346	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.142	Mus_caroli
ENSMICG00000005900	-	100	87.434	ENSMUSG00000056211	R3hdm1	100	94.142	Mus_musculus
ENSMICG00000005900	-	100	87.170	MGP_PahariEiJ_G0027779	R3hdm1	100	94.142	Mus_pahari
ENSMICG00000005900	-	100	87.610	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.142	Mus_spretus
ENSMICG00000005900	-	100	94.389	ENSMPUG00000002412	R3HDM1	100	94.389	Mustela_putorius_furo
ENSMICG00000005900	-	100	92.419	ENSMLUG00000013824	R3HDM1	100	92.419	Myotis_lucifugus
ENSMICG00000005900	-	100	94.280	ENSNLEG00000008622	R3HDM1	100	94.280	Nomascus_leucogenys
ENSMICG00000005900	-	89	71.850	ENSMEUG00000011784	R3HDM1	100	71.748	Notamacropus_eugenii
ENSMICG00000005900	-	100	88.137	ENSODEG00000008607	R3HDM1	100	95.473	Octodon_degus
ENSMICG00000005900	-	94	66.873	ENSONIG00000012017	r3hdm1	91	66.873	Oreochromis_niloticus
ENSMICG00000005900	-	100	80.108	ENSOANG00000007987	R3HDM1	100	80.198	Ornithorhynchus_anatinus
ENSMICG00000005900	-	89	93.198	ENSOCUG00000017366	R3HDM1	98	93.198	Oryctolagus_cuniculus
ENSMICG00000005900	-	87	61.170	ENSORLG00000004297	r3hdm1	90	61.170	Oryzias_latipes
ENSMICG00000005900	-	89	61.600	ENSORLG00015017355	r3hdm1	91	61.600	Oryzias_latipes_hsok
ENSMICG00000005900	-	100	93.756	ENSOGAG00000003136	R3HDM1	100	93.756	Otolemur_garnettii
ENSMICG00000005900	-	100	93.122	ENSOARG00000010788	R3HDM1	100	93.122	Ovis_aries
ENSMICG00000005900	-	100	94.101	ENSPPAG00000027858	R3HDM1	100	94.101	Pan_paniscus
ENSMICG00000005900	-	100	93.665	ENSPPRG00000002626	R3HDM1	100	93.756	Panthera_pardus
ENSMICG00000005900	-	100	93.846	ENSPTIG00000016581	R3HDM1	100	93.937	Panthera_tigris_altaica
ENSMICG00000005900	-	100	94.101	ENSPTRG00000012494	R3HDM1	100	94.101	Pan_troglodytes
ENSMICG00000005900	-	100	94.208	ENSPANG00000026448	R3HDM1	100	94.208	Papio_anubis
ENSMICG00000005900	-	89	75.701	ENSPKIG00000004328	r3hdm1	91	76.677	Paramormyrops_kingsleyae
ENSMICG00000005900	-	100	77.166	ENSPSIG00000012915	R3HDM1	100	77.166	Pelodiscus_sinensis
ENSMICG00000005900	-	100	88.137	ENSPEMG00000015187	R3hdm1	100	93.827	Peromyscus_maniculatus_bairdii
ENSMICG00000005900	-	85	58.000	ENSPMAG00000003369	-	98	41.445	Petromyzon_marinus
ENSMICG00000005900	-	100	90.110	ENSPCIG00000002491	R3HDM1	100	83.363	Phascolarctos_cinereus
ENSMICG00000005900	-	80	67.532	ENSPFOG00000015036	r3hdm1	94	55.231	Poecilia_formosa
ENSMICG00000005900	-	87	59.947	ENSPLAG00000018042	r3hdm1	91	59.947	Poecilia_latipinna
ENSMICG00000005900	-	87	59.947	ENSPMEG00000023947	r3hdm1	91	59.947	Poecilia_mexicana
ENSMICG00000005900	-	80	68.608	ENSPREG00000007902	r3hdm1	94	61.067	Poecilia_reticulata
ENSMICG00000005900	-	100	93.032	ENSPPYG00000012815	R3HDM1	100	93.032	Pongo_abelii
ENSMICG00000005900	-	100	80.797	ENSPCAG00000006208	R3HDM1	100	80.344	Procavia_capensis
ENSMICG00000005900	-	100	95.285	ENSPCOG00000012698	R3HDM1	99	99.630	Propithecus_coquereli
ENSMICG00000005900	-	100	84.539	ENSPVAG00000006098	R3HDM1	100	84.539	Pteropus_vampyrus
ENSMICG00000005900	-	88	76.603	ENSPNAG00000005436	R3HDM1	99	76.527	Pygocentrus_nattereri
ENSMICG00000005900	-	88	74.684	ENSPNAG00000013952	r3hdm1	89	74.603	Pygocentrus_nattereri
ENSMICG00000005900	-	66	38.306	ENSPNAG00000004162	arpp21	58	49.612	Pygocentrus_nattereri
ENSMICG00000005900	-	100	87.170	ENSRNOG00000004099	R3hdm1	100	87.170	Rattus_norvegicus
ENSMICG00000005900	-	100	92.405	ENSRBIG00000033317	R3HDM1	100	98.524	Rhinopithecus_bieti
ENSMICG00000005900	-	100	96.133	ENSRROG00000034534	R3HDM1	100	93.810	Rhinopithecus_roxellana
ENSMICG00000005900	-	100	94.090	ENSSBOG00000020389	R3HDM1	100	94.090	Saimiri_boliviensis_boliviensis
ENSMICG00000005900	-	100	90.110	ENSSHAG00000016999	R3HDM1	100	83.469	Sarcophilus_harrisii
ENSMICG00000005900	-	100	72.162	ENSSFOG00015014134	r3hdm1	100	70.773	Scleropages_formosus
ENSMICG00000005900	-	100	60.922	ENSSFOG00015019851	-	91	65.854	Scleropages_formosus
ENSMICG00000005900	-	99	60.270	ENSSMAG00000001669	r3hdm1	99	44.560	Scophthalmus_maximus
ENSMICG00000005900	-	87	62.500	ENSSDUG00000010749	r3hdm1	91	62.500	Seriola_dumerili
ENSMICG00000005900	-	92	69.231	ENSSLDG00000004499	r3hdm1	91	57.946	Seriola_lalandi_dorsalis
ENSMICG00000005900	-	66	94.958	ENSSARG00000000352	-	63	94.958	Sorex_araneus
ENSMICG00000005900	-	100	79.351	ENSSPUG00000004167	R3HDM1	100	79.170	Sphenodon_punctatus
ENSMICG00000005900	-	87	63.200	ENSSPAG00000004648	r3hdm1	91	63.200	Stegastes_partitus
ENSMICG00000005900	-	100	96.409	ENSSSCG00000015692	R3HDM1	100	93.846	Sus_scrofa
ENSMICG00000005900	-	100	74.384	ENSTGUG00000011750	R3HDM1	100	72.032	Taeniopygia_guttata
ENSMICG00000005900	-	87	58.549	ENSTRUG00000011654	r3hdm1	91	58.549	Takifugu_rubripes
ENSMICG00000005900	-	81	67.732	ENSTNIG00000010362	r3hdm1	95	46.583	Tetraodon_nigroviridis
ENSMICG00000005900	-	100	87.862	ENSTTRG00000003935	R3HDM1	96	96.023	Tursiops_truncatus
ENSMICG00000005900	-	70	95.747	ENSUAMG00000024806	R3HDM1	99	94.649	Ursus_americanus
ENSMICG00000005900	-	100	97.238	ENSUMAG00000005552	R3HDM1	100	92.923	Ursus_maritimus
ENSMICG00000005900	-	97	93.382	ENSVPAG00000007333	R3HDM1	93	89.474	Vicugna_pacos
ENSMICG00000005900	-	100	96.961	ENSVVUG00000006457	R3HDM1	100	91.652	Vulpes_vulpes
ENSMICG00000005900	-	89	66.165	ENSXETG00000019330	r3hdm1	100	66.066	Xenopus_tropicalis
ENSMICG00000005900	-	75	48.743	ENSXCOG00000017448	r3hdm1	94	50.385	Xiphophorus_couchianus
ENSMICG00000005900	-	87	61.600	ENSXMAG00000007885	r3hdm1	82	68.285	Xiphophorus_maculatus