EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMICG00000006573 (Gene tree)
Gene ID: 105880826
Gene Symbol: -
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Plus strand
Length: 58551 bases
Position: chr21:22737587-22796137
Accession: 105880826
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000035684	ResIII	PF04851.15	1e-07	1	1
ENSMICP00000037884	ResIII	PF04851.15	1.2e-07	1	1
ENSMICP00000020031	ResIII	PF04851.15	1.3e-07	1	1
ENSMICP00000006012	ResIII	PF04851.15	1.3e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000054104	-	3831	-	ENSMICP00000020031	1276 (aa)	-	UPI000C2EC602
ENSMICT00000043917	-	4047	-	ENSMICP00000037884	1348 (aa)	-	UPI000C2EC36B
ENSMICT00000047068	-	2277	-	ENSMICP00000035684	758 (aa)	-	UPI000C2EBE49
ENSMICT00000006583	-	4155	XM_012782133	ENSMICP00000006012	1384 (aa)	XP_012637587	UPI00085B10B7

Gene Model

Click here to download ENSMICG00000006573's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000006573's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMICG00000006573	-	71	67.347	ENSMICG00000013071	SBNO2	72	67.347

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000006573	-	100	97.128	ENSG00000139697	SBNO1	100	97.128	Homo_sapiens
ENSMICG00000006573	-	83	80.645	ENSAPOG00000003196	sbno1	98	79.278	Acanthochromis_polyacanthus
ENSMICG00000006573	-	100	96.991	ENSAMEG00000015151	SBNO1	100	96.991	Ailuropoda_melanoleuca
ENSMICG00000006573	-	99	79.049	ENSACIG00000008088	sbno1	99	74.711	Amphilophus_citrinellus
ENSMICG00000006573	-	99	79.928	ENSAOCG00000014859	sbno1	94	80.399	Amphiprion_ocellaris
ENSMICG00000006573	-	99	79.928	ENSAPEG00000006069	sbno1	94	80.399	Amphiprion_percula
ENSMICG00000006573	-	99	81.004	ENSATEG00000006667	sbno1	95	81.522	Anabas_testudineus
ENSMICG00000006573	-	100	91.098	ENSAPLG00000015674	SBNO1	100	91.248	Anas_platyrhynchos
ENSMICG00000006573	-	99	90.248	ENSACAG00000015441	SBNO1	88	88.192	Anolis_carolinensis
ENSMICG00000006573	-	100	97.105	ENSANAG00000029958	-	100	97.105	Aotus_nancymaae
ENSMICG00000006573	-	99	74.724	ENSACLG00000024913	sbno1	99	74.671	Astatotilapia_calliptera
ENSMICG00000006573	-	99	84.144	ENSAMXG00000019473	sbno1	94	84.211	Astyanax_mexicanus
ENSMICG00000006573	-	99	98.549	ENSBTAG00000020505	SBNO1	99	97.414	Bos_taurus
ENSMICG00000006573	-	100	96.913	ENSCJAG00000016599	SBNO1	100	96.913	Callithrix_jacchus
ENSMICG00000006573	-	100	97.276	ENSCAFG00000007503	SBNO1	100	97.276	Canis_familiaris
ENSMICG00000006573	-	99	97.638	ENSCAFG00020015363	SBNO1	100	96.554	Canis_lupus_dingo
ENSMICG00000006573	-	99	97.198	ENSCHIG00000008382	SBNO1	99	97.198	Capra_hircus
ENSMICG00000006573	-	100	97.642	ENSTSYG00000012749	SBNO1	100	97.642	Carlito_syrichta
ENSMICG00000006573	-	97	96.523	ENSCAPG00000000384	SBNO1	100	96.769	Cavia_aperea
ENSMICG00000006573	-	100	96.401	ENSCPOG00000008109	SBNO1	100	96.401	Cavia_porcellus
ENSMICG00000006573	-	99	97.490	ENSCCAG00000035316	SBNO1	99	95.095	Cebus_capucinus
ENSMICG00000006573	-	99	96.564	ENSCATG00000008239	SBNO1	99	96.750	Cercocebus_atys
ENSMICG00000006573	-	100	96.339	ENSCLAG00000008995	SBNO1	100	96.339	Chinchilla_lanigera
ENSMICG00000006573	-	85	97.582	ENSCSAG00000002064	SBNO1	100	97.582	Chlorocebus_sabaeus
ENSMICG00000006573	-	96	93.173	ENSCHOG00000008814	SBNO1	96	93.173	Choloepus_hoffmanni
ENSMICG00000006573	-	100	91.535	ENSCPBG00000025968	SBNO1	99	91.392	Chrysemys_picta_bellii
ENSMICG00000006573	-	100	91.685	ENSCANG00000042688	-	100	91.613	Colobus_angolensis_palliatus
ENSMICG00000006573	-	100	96.339	ENSCGRG00001017470	Sbno1	100	96.339	Cricetulus_griseus_chok1gshd
ENSMICG00000006573	-	100	96.339	ENSCGRG00000004756	Sbno1	100	96.339	Cricetulus_griseus_crigri
ENSMICG00000006573	-	99	79.676	ENSCSEG00000011919	sbno1	95	80.218	Cynoglossus_semilaevis
ENSMICG00000006573	-	99	80.287	ENSCVAG00000007038	sbno1	95	80.762	Cyprinodon_variegatus
ENSMICG00000006573	-	99	78.016	ENSDARG00000099080	sbno1	94	83.759	Danio_rerio
ENSMICG00000006573	-	100	97.755	ENSDNOG00000017147	SBNO1	98	96.608	Dasypus_novemcinctus
ENSMICG00000006573	-	100	83.346	ENSDORG00000015261	Sbno1	100	83.346	Dipodomys_ordii
ENSMICG00000006573	-	99	85.063	ENSETEG00000005620	SBNO1	93	90.596	Echinops_telfairi
ENSMICG00000006573	-	99	63.041	ENSEBUG00000013823	sbno1	85	79.188	Eptatretus_burgeri
ENSMICG00000006573	-	89	99.555	ENSEASG00005012595	-	92	99.555	Equus_asinus_asinus
ENSMICG00000006573	-	100	97.703	ENSECAG00000006127	SBNO1	100	97.703	Equus_caballus
ENSMICG00000006573	-	82	98.352	ENSEEUG00000003793	SBNO1	83	98.352	Erinaceus_europaeus
ENSMICG00000006573	-	99	83.604	ENSELUG00000002886	sbno1	94	84.029	Esox_lucius
ENSMICG00000006573	-	99	97.629	ENSFCAG00000015331	SBNO1	99	97.629	Felis_catus
ENSMICG00000006573	-	99	92.224	ENSFALG00000009273	SBNO1	100	91.033	Ficedula_albicollis
ENSMICG00000006573	-	99	95.067	ENSFDAG00000014232	SBNO1	99	95.067	Fukomys_damarensis
ENSMICG00000006573	-	99	80.466	ENSFHEG00000007360	sbno1	95	80.944	Fundulus_heteroclitus
ENSMICG00000006573	-	96	79.433	ENSGMOG00000018229	sbno1	99	77.252	Gadus_morhua
ENSMICG00000006573	-	98	88.546	ENSGALG00000003392	SBNO1	99	91.153	Gallus_gallus
ENSMICG00000006573	-	99	80.645	ENSGAFG00000003960	sbno1	95	81.125	Gambusia_affinis
ENSMICG00000006573	-	96	80.944	ENSGACG00000015633	sbno1	99	77.574	Gasterosteus_aculeatus
ENSMICG00000006573	-	100	91.388	ENSGAGG00000001065	SBNO1	99	92.043	Gopherus_agassizii
ENSMICG00000006573	-	100	97.052	ENSGGOG00000015000	SBNO1	100	97.052	Gorilla_gorilla
ENSMICG00000006573	-	98	73.360	ENSHBUG00000011910	sbno1	99	68.950	Haplochromis_burtoni
ENSMICG00000006573	-	100	96.411	ENSHGLG00000014165	-	100	96.411	Heterocephalus_glaber_female
ENSMICG00000006573	-	93	81.423	ENSHCOG00000003246	sbno1	95	81.423	Hippocampus_comes
ENSMICG00000006573	-	99	83.394	ENSIPUG00000015830	Sbno1	92	84.824	Ictalurus_punctatus
ENSMICG00000006573	-	100	97.347	ENSSTOG00000023221	SBNO1	100	97.347	Ictidomys_tridecemlineatus
ENSMICG00000006573	-	100	96.626	ENSJJAG00000001741	Sbno1	100	96.626	Jaculus_jaculus
ENSMICG00000006573	-	99	75.437	ENSKMAG00000009696	sbno1	95	81.204	Kryptolebias_marmoratus
ENSMICG00000006573	-	99	82.194	ENSLBEG00000007623	sbno1	95	82.577	Labrus_bergylta
ENSMICG00000006573	-	99	80.143	ENSLACG00000017227	SBNO1	99	82.429	Latimeria_chalumnae
ENSMICG00000006573	-	99	85.766	ENSLOCG00000005725	sbno1	92	86.207	Lepisosteus_oculatus
ENSMICG00000006573	-	100	96.339	ENSLAFG00000002135	SBNO1	100	96.339	Loxodonta_africana
ENSMICG00000006573	-	100	96.985	ENSMFAG00000031429	SBNO1	100	96.985	Macaca_fascicularis
ENSMICG00000006573	-	100	96.985	ENSMMUG00000011496	SBNO1	100	96.985	Macaca_mulatta
ENSMICG00000006573	-	99	96.564	ENSMLEG00000033260	SBNO1	99	96.383	Mandrillus_leucophaeus
ENSMICG00000006573	-	99	74.560	ENSMAMG00000005473	sbno1	95	81.851	Mastacembelus_armatus
ENSMICG00000006573	-	99	92.405	ENSMGAG00000003274	SBNO1	100	91.176	Meleagris_gallopavo
ENSMICG00000006573	-	87	97.888	ENSMAUG00000004834	-	100	97.888	Mesocricetus_auratus
ENSMICG00000006573	-	100	96.088	ENSMOCG00000009390	Sbno1	100	96.088	Microtus_ochrogaster
ENSMICG00000006573	-	99	81.488	ENSMMOG00000008691	sbno1	93	81.488	Mola_mola
ENSMICG00000006573	-	99	94.037	ENSMODG00000012470	SBNO1	98	94.037	Monodelphis_domestica
ENSMICG00000006573	-	99	79.496	ENSMALG00000001056	sbno1	99	73.986	Monopterus_albus
ENSMICG00000006573	-	99	96.377	MGP_CAROLIEiJ_G0027749	Sbno1	100	97.888	Mus_caroli
ENSMICG00000006573	-	99	97.358	ENSMUSG00000038095	Sbno1	100	98.190	Mus_musculus
ENSMICG00000006573	-	99	96.962	MGP_PahariEiJ_G0024329	Sbno1	100	97.888	Mus_pahari
ENSMICG00000006573	-	99	96.480	MGP_SPRETEiJ_G0028747	Sbno1	100	98.190	Mus_spretus
ENSMICG00000006573	-	100	97.487	ENSMPUG00000001658	SBNO1	100	97.487	Mustela_putorius_furo
ENSMICG00000006573	-	100	96.913	ENSMLUG00000017159	SBNO1	100	96.913	Myotis_lucifugus
ENSMICG00000006573	-	100	97.344	ENSNGAG00000012620	Sbno1	100	97.344	Nannospalax_galili
ENSMICG00000006573	-	99	75.849	ENSNBRG00000019189	sbno1	99	75.791	Neolamprologus_brichardi
ENSMICG00000006573	-	99	97.490	ENSNLEG00000001502	SBNO1	99	95.068	Nomascus_leucogenys
ENSMICG00000006573	-	89	80.057	ENSMEUG00000008768	-	93	89.873	Notamacropus_eugenii
ENSMICG00000006573	-	99	94.404	ENSOPRG00000011054	SBNO1	100	93.047	Ochotona_princeps
ENSMICG00000006573	-	100	96.322	ENSODEG00000009997	SBNO1	100	96.322	Octodon_degus
ENSMICG00000006573	-	99	74.243	ENSONIG00000015348	sbno1	95	80.657	Oreochromis_niloticus
ENSMICG00000006573	-	98	95.186	ENSOCUG00000002441	SBNO1	95	95.186	Oryctolagus_cuniculus
ENSMICG00000006573	-	99	79.317	ENSORLG00000001593	sbno1	95	79.673	Oryzias_latipes
ENSMICG00000006573	-	99	79.317	ENSORLG00020015216	sbno1	95	79.673	Oryzias_latipes_hni
ENSMICG00000006573	-	99	79.496	ENSORLG00015002726	sbno1	95	79.855	Oryzias_latipes_hsok
ENSMICG00000006573	-	99	78.169	ENSOMEG00000019313	sbno1	94	79.964	Oryzias_melastigma
ENSMICG00000006573	-	87	95.181	ENSOGAG00000010781	-	100	95.482	Otolemur_garnettii
ENSMICG00000006573	-	99	96.987	ENSOARG00000004404	SBNO1	99	96.987	Ovis_aries
ENSMICG00000006573	-	100	97.128	ENSPPAG00000024635	SBNO1	100	97.128	Pan_paniscus
ENSMICG00000006573	-	99	97.629	ENSPPRG00000022092	SBNO1	99	97.629	Panthera_pardus
ENSMICG00000006573	-	100	97.344	ENSPTIG00000017803	SBNO1	100	97.344	Panthera_tigris_altaica
ENSMICG00000006573	-	100	97.200	ENSPTRG00000005597	SBNO1	100	97.200	Pan_troglodytes
ENSMICG00000006573	-	100	97.052	ENSPANG00000011640	SBNO1	100	97.052	Papio_anubis
ENSMICG00000006573	-	99	82.771	ENSPKIG00000001441	sbno1	99	79.429	Paramormyrops_kingsleyae
ENSMICG00000006573	-	98	84.655	ENSPSIG00000009256	-	100	86.869	Pelodiscus_sinensis
ENSMICG00000006573	-	100	91.090	ENSPSIG00000009572	-	100	90.574	Pelodiscus_sinensis
ENSMICG00000006573	-	62	82.158	ENSPMGG00000017196	sbno1	93	82.222	Periophthalmus_magnuspinnatus
ENSMICG00000006573	-	100	96.123	ENSPEMG00000016087	Sbno1	100	96.123	Peromyscus_maniculatus_bairdii
ENSMICG00000006573	-	57	60.377	ENSPMAG00000007246	-	100	60.373	Petromyzon_marinus
ENSMICG00000006573	-	98	95.040	ENSPCIG00000010985	SBNO1	99	93.611	Phascolarctos_cinereus
ENSMICG00000006573	-	99	80.645	ENSPFOG00000005069	sbno1	95	81.125	Poecilia_formosa
ENSMICG00000006573	-	99	80.645	ENSPLAG00000015015	sbno1	95	81.125	Poecilia_latipinna
ENSMICG00000006573	-	99	80.645	ENSPMEG00000021212	sbno1	95	81.125	Poecilia_mexicana
ENSMICG00000006573	-	99	80.287	ENSPREG00000017746	sbno1	95	80.762	Poecilia_reticulata
ENSMICG00000006573	-	100	96.770	ENSPPYG00000005084	SBNO1	100	96.770	Pongo_abelii
ENSMICG00000006573	-	89	93.014	ENSPCAG00000008634	SBNO1	88	92.985	Procavia_capensis
ENSMICG00000006573	-	100	98.062	ENSPCOG00000024277	SBNO1	100	98.062	Propithecus_coquereli
ENSMICG00000006573	-	92	95.635	ENSPVAG00000015304	SBNO1	87	95.635	Pteropus_vampyrus
ENSMICG00000006573	-	99	74.560	ENSPNYG00000004291	sbno1	95	80.657	Pundamilia_nyererei
ENSMICG00000006573	-	99	85.018	ENSPNAG00000015622	sbno1	95	85.118	Pygocentrus_nattereri
ENSMICG00000006573	-	99	96.408	ENSRNOG00000001064	Sbno1	99	96.408	Rattus_norvegicus
ENSMICG00000006573	-	100	97.128	ENSRROG00000034230	SBNO1	100	97.128	Rhinopithecus_roxellana
ENSMICG00000006573	-	97	91.314	ENSSBOG00000015422	SBNO1	100	91.815	Saimiri_boliviensis_boliviensis
ENSMICG00000006573	-	99	82.918	ENSSFOG00015019025	sbno1	99	79.971	Scleropages_formosus
ENSMICG00000006573	-	99	80.216	ENSSMAG00000013640	sbno1	95	80.762	Scophthalmus_maximus
ENSMICG00000006573	-	99	81.374	ENSSDUG00000023480	sbno1	95	81.670	Seriola_dumerili
ENSMICG00000006573	-	99	81.374	ENSSLDG00000007928	sbno1	95	81.670	Seriola_lalandi_dorsalis
ENSMICG00000006573	-	89	97.120	ENSSARG00000002594	SBNO1	89	97.120	Sorex_araneus
ENSMICG00000006573	-	100	90.133	ENSSPUG00000012640	SBNO1	100	90.353	Sphenodon_punctatus
ENSMICG00000006573	-	99	80.216	ENSSPAG00000016244	sbno1	95	80.581	Stegastes_partitus
ENSMICG00000006573	-	99	98.681	ENSSSCG00000009776	SBNO1	100	97.570	Sus_scrofa
ENSMICG00000006573	-	99	92.405	ENSTGUG00000005380	SBNO1	100	90.961	Taeniopygia_guttata
ENSMICG00000006573	-	99	80.832	ENSTRUG00000018490	sbno1	95	81.387	Takifugu_rubripes
ENSMICG00000006573	-	99	69.451	ENSTNIG00000013506	sbno1	99	70.756	Tetraodon_nigroviridis
ENSMICG00000006573	-	100	97.416	ENSUAMG00000019671	SBNO1	100	97.416	Ursus_americanus
ENSMICG00000006573	-	100	97.416	ENSUMAG00000004002	SBNO1	100	97.416	Ursus_maritimus
ENSMICG00000006573	-	95	93.478	ENSVPAG00000007024	SBNO1	95	93.478	Vicugna_pacos
ENSMICG00000006573	-	100	97.487	ENSVVUG00000027807	SBNO1	100	97.487	Vulpes_vulpes
ENSMICG00000006573	-	99	89.088	ENSXETG00000031930	SBNO1	94	89.818	Xenopus_tropicalis
ENSMICG00000006573	-	98	72.158	ENSXCOG00000011607	sbno1	90	81.316	Xiphophorus_couchianus
ENSMICG00000006573	-	99	80.287	ENSXMAG00000002140	sbno1	95	80.762	Xiphophorus_maculatus