EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMICG00000012913 (Gene tree)
Gene ID: 105857917
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Minus strand
Length: 222408 bases
Position: chr16:47768039-47990446
Accession: 105857917
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000011772	EST1	PF10374.9	4.1e-15	1	1
ENSMICP00000011772	EST1_DNA_bind	PF10373.9	1.8e-60	1	1
ENSMICP00000011772	PIN_4	PF13638.6	1.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000012920	SMG6-201	6027	XM_012740648	ENSMICP00000011772	1418 (aa)	XP_012596102	UPI000643506A

Gene Model

Click here to download ENSMICG00000012913's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000012913's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000012913	SMG6	100	94.503	ENSG00000070366	SMG6	100	99.275	Homo_sapiens
ENSMICG00000012913	SMG6	83	55.194	ENSAPOG00000019448	smg6	74	55.035	Acanthochromis_polyacanthus
ENSMICG00000012913	SMG6	100	94.856	ENSAMEG00000007632	SMG6	100	94.856	Ailuropoda_melanoleuca
ENSMICG00000012913	SMG6	83	54.849	ENSAOCG00000002630	smg6	74	55.121	Amphiprion_ocellaris
ENSMICG00000012913	SMG6	83	55.008	ENSAPEG00000019101	smg6	74	55.278	Amphiprion_percula
ENSMICG00000012913	SMG6	83	55.477	ENSATEG00000006483	smg6	73	55.047	Anabas_testudineus
ENSMICG00000012913	SMG6	87	56.443	ENSACAG00000011783	SMG6	99	58.077	Anolis_carolinensis
ENSMICG00000012913	SMG6	100	94.856	ENSANAG00000035760	SMG6	100	94.856	Aotus_nancymaae
ENSMICG00000012913	SMG6	71	59.317	ENSACLG00000005288	smg6	82	54.138	Astatotilapia_calliptera
ENSMICG00000012913	SMG6	68	63.232	ENSAMXG00000017326	smg6	99	50.414	Astyanax_mexicanus
ENSMICG00000012913	SMG6	100	94.292	ENSBTAG00000000267	SMG6	100	94.292	Bos_taurus
ENSMICG00000012913	SMG6	100	94.715	ENSCJAG00000001820	SMG6	100	94.715	Callithrix_jacchus
ENSMICG00000012913	SMG6	100	94.785	ENSCAFG00000019260	SMG6	100	94.785	Canis_familiaris
ENSMICG00000012913	SMG6	100	94.785	ENSCAFG00020009770	SMG6	100	94.785	Canis_lupus_dingo
ENSMICG00000012913	SMG6	100	93.939	ENSCHIG00000021998	SMG6	100	93.939	Capra_hircus
ENSMICG00000012913	SMG6	100	95.349	ENSTSYG00000003406	SMG6	100	98.239	Carlito_syrichta
ENSMICG00000012913	SMG6	98	78.921	ENSCAPG00000016197	SMG6	99	83.607	Cavia_aperea
ENSMICG00000012913	SMG6	100	92.535	ENSCPOG00000014878	SMG6	100	92.535	Cavia_porcellus
ENSMICG00000012913	SMG6	100	94.856	ENSCCAG00000035801	SMG6	100	94.856	Cebus_capucinus
ENSMICG00000012913	SMG6	100	94.644	ENSCATG00000031956	SMG6	100	94.644	Cercocebus_atys
ENSMICG00000012913	SMG6	100	94.433	ENSCLAG00000006748	SMG6	100	94.433	Chinchilla_lanigera
ENSMICG00000012913	SMG6	100	95.208	ENSCSAG00000013800	SMG6	100	95.208	Chlorocebus_sabaeus
ENSMICG00000012913	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSMICG00000012913	SMG6	100	73.056	ENSCPBG00000020369	SMG6	100	73.611	Chrysemys_picta_bellii
ENSMICG00000012913	SMG6	98	95.032	ENSCANG00000031764	SMG6	100	97.652	Colobus_angolensis_palliatus
ENSMICG00000012913	SMG6	55	90.281	ENSCGRG00001019595	Smg6	98	90.281	Cricetulus_griseus_chok1gshd
ENSMICG00000012913	SMG6	98	86.527	ENSCGRG00000007782	Smg6	100	86.671	Cricetulus_griseus_crigri
ENSMICG00000012913	SMG6	85	54.375	ENSCSEG00000012757	smg6	80	54.219	Cynoglossus_semilaevis
ENSMICG00000012913	SMG6	72	57.790	ENSCVAG00000012789	smg6	86	54.082	Cyprinodon_variegatus
ENSMICG00000012913	SMG6	100	50.200	ENSDARG00000100481	smg6	89	56.230	Danio_rerio
ENSMICG00000012913	SMG6	100	93.728	ENSDNOG00000048283	SMG6	100	93.728	Dasypus_novemcinctus
ENSMICG00000012913	SMG6	100	90.386	ENSDORG00000016614	Smg6	94	99.550	Dipodomys_ordii
ENSMICG00000012913	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSMICG00000012913	SMG6	73	50.389	ENSEBUG00000005059	smg6	73	48.696	Eptatretus_burgeri
ENSMICG00000012913	SMG6	99	95.272	ENSEASG00005009318	SMG6	99	95.272	Equus_asinus_asinus
ENSMICG00000012913	SMG6	99	94.989	ENSECAG00000006519	SMG6	99	94.989	Equus_caballus
ENSMICG00000012913	SMG6	100	83.298	ENSEEUG00000003493	SMG6	100	83.298	Erinaceus_europaeus
ENSMICG00000012913	SMG6	71	60.426	ENSELUG00000005934	smg6	69	55.487	Esox_lucius
ENSMICG00000012913	SMG6	100	95.842	ENSFCAG00000028817	SMG6	100	95.842	Felis_catus
ENSMICG00000012913	SMG6	98	72.482	ENSFALG00000006538	SMG6	100	72.553	Ficedula_albicollis
ENSMICG00000012913	SMG6	100	93.798	ENSFDAG00000015106	SMG6	100	93.798	Fukomys_damarensis
ENSMICG00000012913	SMG6	83	52.960	ENSFHEG00000013282	smg6	75	53.385	Fundulus_heteroclitus
ENSMICG00000012913	SMG6	53	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSMICG00000012913	SMG6	100	72.069	ENSGALG00000003108	SMG6	98	72.307	Gallus_gallus
ENSMICG00000012913	SMG6	83	53.882	ENSGAFG00000000379	smg6	74	54.225	Gambusia_affinis
ENSMICG00000012913	SMG6	90	53.943	ENSGACG00000020521	smg6	99	53.783	Gasterosteus_aculeatus
ENSMICG00000012913	SMG6	98	72.637	ENSGAGG00000025617	SMG6	100	73.205	Gopherus_agassizii
ENSMICG00000012913	SMG6	100	95.419	ENSGGOG00000017156	SMG6	100	95.419	Gorilla_gorilla
ENSMICG00000012913	SMG6	86	53.338	ENSHBUG00000021311	smg6	76	54.490	Haplochromis_burtoni
ENSMICG00000012913	SMG6	100	93.666	ENSHGLG00000012882	SMG6	100	93.666	Heterocephalus_glaber_female
ENSMICG00000012913	SMG6	100	93.737	ENSHGLG00100017815	SMG6	100	93.737	Heterocephalus_glaber_male
ENSMICG00000012913	SMG6	77	56.487	ENSHCOG00000008761	smg6	97	53.771	Hippocampus_comes
ENSMICG00000012913	SMG6	96	54.996	ENSIPUG00000012493	smg6	88	54.467	Ictalurus_punctatus
ENSMICG00000012913	SMG6	100	95.913	ENSSTOG00000028127	SMG6	100	95.913	Ictidomys_tridecemlineatus
ENSMICG00000012913	SMG6	79	90.544	ENSJJAG00000015367	Smg6	95	88.562	Jaculus_jaculus
ENSMICG00000012913	SMG6	74	58.897	ENSKMAG00000000279	smg6	78	53.723	Kryptolebias_marmoratus
ENSMICG00000012913	SMG6	86	53.379	ENSLBEG00000002184	smg6	76	53.574	Labrus_bergylta
ENSMICG00000012913	SMG6	56	57.543	ENSLACG00000000806	-	98	59.360	Latimeria_chalumnae
ENSMICG00000012913	SMG6	72	66.380	ENSLOCG00000006448	smg6	89	59.563	Lepisosteus_oculatus
ENSMICG00000012913	SMG6	100	94.010	ENSLAFG00000001261	SMG6	100	94.010	Loxodonta_africana
ENSMICG00000012913	SMG6	100	95.208	ENSMFAG00000003394	SMG6	100	95.208	Macaca_fascicularis
ENSMICG00000012913	SMG6	100	95.137	ENSMMUG00000023161	SMG6	100	95.137	Macaca_mulatta
ENSMICG00000012913	SMG6	100	90.429	ENSMNEG00000044592	SMG6	100	90.429	Macaca_nemestrina
ENSMICG00000012913	SMG6	98	92.502	ENSMLEG00000029353	SMG6	99	92.502	Mandrillus_leucophaeus
ENSMICG00000012913	SMG6	85	55.411	ENSMAMG00000020119	smg6	80	55.419	Mastacembelus_armatus
ENSMICG00000012913	SMG6	71	59.338	ENSMZEG00005024736	smg6	76	54.497	Maylandia_zebra
ENSMICG00000012913	SMG6	73	66.761	ENSMGAG00000005401	-	99	66.761	Meleagris_gallopavo
ENSMICG00000012913	SMG6	100	47.791	ENSMMOG00000010883	smg6	100	48.375	Mola_mola
ENSMICG00000012913	SMG6	100	86.709	ENSMODG00000010622	SMG6	100	86.709	Monodelphis_domestica
ENSMICG00000012913	SMG6	83	54.864	ENSMALG00000001106	smg6	73	54.869	Monopterus_albus
ENSMICG00000012913	SMG6	100	92.812	MGP_CAROLIEiJ_G0016729	Smg6	100	92.812	Mus_caroli
ENSMICG00000012913	SMG6	100	92.600	ENSMUSG00000038290	Smg6	100	92.600	Mus_musculus
ENSMICG00000012913	SMG6	100	92.389	MGP_PahariEiJ_G0017866	Smg6	100	92.389	Mus_pahari
ENSMICG00000012913	SMG6	100	92.600	MGP_SPRETEiJ_G0017572	Smg6	100	92.600	Mus_spretus
ENSMICG00000012913	SMG6	100	94.926	ENSMPUG00000013046	SMG6	100	94.926	Mustela_putorius_furo
ENSMICG00000012913	SMG6	100	94.362	ENSMLUG00000005739	SMG6	100	94.362	Myotis_lucifugus
ENSMICG00000012913	SMG6	98	92.225	ENSNGAG00000007287	Smg6	100	92.225	Nannospalax_galili
ENSMICG00000012913	SMG6	86	52.788	ENSNBRG00000009511	smg6	83	53.699	Neolamprologus_brichardi
ENSMICG00000012913	SMG6	98	94.692	ENSNLEG00000017171	SMG6	100	98.239	Nomascus_leucogenys
ENSMICG00000012913	SMG6	98	82.759	ENSMEUG00000015804	SMG6	100	82.759	Notamacropus_eugenii
ENSMICG00000012913	SMG6	62	93.213	ENSOPRG00000000579	SMG6	85	98.421	Ochotona_princeps
ENSMICG00000012913	SMG6	100	87.262	ENSODEG00000008038	SMG6	100	87.262	Octodon_degus
ENSMICG00000012913	SMG6	100	51.040	ENSONIG00000005594	smg6	100	51.738	Oreochromis_niloticus
ENSMICG00000012913	SMG6	100	94.581	ENSOCUG00000013018	SMG6	100	94.792	Oryctolagus_cuniculus
ENSMICG00000012913	SMG6	83	54.488	ENSORLG00000003317	smg6	74	55.137	Oryzias_latipes
ENSMICG00000012913	SMG6	83	54.495	ENSORLG00020015343	smg6	74	54.753	Oryzias_latipes_hni
ENSMICG00000012913	SMG6	83	54.445	ENSORLG00015020454	smg6	74	55.016	Oryzias_latipes_hsok
ENSMICG00000012913	SMG6	83	53.507	ENSOMEG00000010838	smg6	75	54.065	Oryzias_melastigma
ENSMICG00000012913	SMG6	100	96.479	ENSOGAG00000004483	SMG6	100	96.479	Otolemur_garnettii
ENSMICG00000012913	SMG6	100	92.113	ENSOARG00000015076	SMG6	100	93.718	Ovis_aries
ENSMICG00000012913	SMG6	100	95.490	ENSPPAG00000043296	SMG6	100	95.490	Pan_paniscus
ENSMICG00000012913	SMG6	100	95.983	ENSPPRG00000014581	SMG6	100	95.983	Panthera_pardus
ENSMICG00000012913	SMG6	98	96.101	ENSPTIG00000008925	SMG6	100	98.826	Panthera_tigris_altaica
ENSMICG00000012913	SMG6	100	95.490	ENSPTRG00000008544	SMG6	100	98.434	Pan_troglodytes
ENSMICG00000012913	SMG6	100	94.996	ENSPANG00000024588	SMG6	100	94.996	Papio_anubis
ENSMICG00000012913	SMG6	89	71.484	ENSPSIG00000006660	SMG6	96	71.562	Pelodiscus_sinensis
ENSMICG00000012913	SMG6	98	60.948	ENSPMGG00000000844	smg6	100	60.948	Periophthalmus_magnuspinnatus
ENSMICG00000012913	SMG6	100	94.080	ENSPEMG00000020707	Smg6	100	94.080	Peromyscus_maniculatus_bairdii
ENSMICG00000012913	SMG6	100	51.852	ENSPFOG00000012035	smg6	100	51.444	Poecilia_formosa
ENSMICG00000012913	SMG6	77	56.518	ENSPLAG00000017660	smg6	74	53.895	Poecilia_latipinna
ENSMICG00000012913	SMG6	77	56.544	ENSPMEG00000000258	smg6	74	54.209	Poecilia_mexicana
ENSMICG00000012913	SMG6	83	54.082	ENSPREG00000010066	smg6	74	54.039	Poecilia_reticulata
ENSMICG00000012913	SMG6	100	89.944	ENSPPYG00000007790	SMG6	100	89.944	Pongo_abelii
ENSMICG00000012913	SMG6	100	89.570	ENSPCAG00000000552	SMG6	100	89.570	Procavia_capensis
ENSMICG00000012913	SMG6	100	98.591	ENSPCOG00000020925	SMG6	100	98.591	Propithecus_coquereli
ENSMICG00000012913	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSMICG00000012913	SMG6	86	54.510	ENSPNYG00000024151	smg6	81	56.211	Pundamilia_nyererei
ENSMICG00000012913	SMG6	84	53.021	ENSPNAG00000015480	smg6	100	52.686	Pygocentrus_nattereri
ENSMICG00000012913	SMG6	100	93.164	ENSRNOG00000003041	Smg6	97	96.542	Rattus_norvegicus
ENSMICG00000012913	SMG6	100	95.137	ENSRBIG00000024746	SMG6	100	95.137	Rhinopithecus_bieti
ENSMICG00000012913	SMG6	100	95.208	ENSRROG00000030423	SMG6	100	97.260	Rhinopithecus_roxellana
ENSMICG00000012913	SMG6	100	94.715	ENSSBOG00000022518	SMG6	100	93.023	Saimiri_boliviensis_boliviensis
ENSMICG00000012913	SMG6	98	86.011	ENSSHAG00000010045	SMG6	98	86.011	Sarcophilus_harrisii
ENSMICG00000012913	SMG6	74	61.879	ENSSFOG00015005436	smg6	70	57.832	Scleropages_formosus
ENSMICG00000012913	SMG6	83	55.478	ENSSMAG00000019777	smg6	73	54.992	Scophthalmus_maximus
ENSMICG00000012913	SMG6	83	55.286	ENSSDUG00000016412	smg6	79	52.770	Seriola_dumerili
ENSMICG00000012913	SMG6	80	54.420	ENSSLDG00000020747	smg6	83	51.891	Seriola_lalandi_dorsalis
ENSMICG00000012913	SMG6	99	70.633	ENSSPUG00000007152	SMG6	99	70.633	Sphenodon_punctatus
ENSMICG00000012913	SMG6	83	54.595	ENSSPAG00000015633	smg6	74	54.910	Stegastes_partitus
ENSMICG00000012913	SMG6	100	94.296	ENSSSCG00000017826	SMG6	100	94.296	Sus_scrofa
ENSMICG00000012913	SMG6	100	72.791	ENSTGUG00000005836	SMG6	100	72.931	Taeniopygia_guttata
ENSMICG00000012913	SMG6	100	48.274	ENSTRUG00000000358	smg6	100	48.582	Takifugu_rubripes
ENSMICG00000012913	SMG6	100	50.033	ENSTNIG00000016164	smg6	100	50.364	Tetraodon_nigroviridis
ENSMICG00000012913	SMG6	100	90.345	ENSTBEG00000011424	SMG6	100	90.345	Tupaia_belangeri
ENSMICG00000012913	SMG6	91	91.970	ENSTTRG00000001175	SMG6	91	91.970	Tursiops_truncatus
ENSMICG00000012913	SMG6	100	95.077	ENSUAMG00000025152	SMG6	100	95.101	Ursus_americanus
ENSMICG00000012913	SMG6	98	95.596	ENSUMAG00000009306	SMG6	100	95.596	Ursus_maritimus
ENSMICG00000012913	SMG6	85	96.296	ENSVPAG00000000225	SMG6	88	96.296	Vicugna_pacos
ENSMICG00000012913	SMG6	100	94.574	ENSVVUG00000021727	SMG6	100	94.574	Vulpes_vulpes
ENSMICG00000012913	SMG6	98	59.718	ENSXETG00000023799	SMG6	100	59.437	Xenopus_tropicalis
ENSMICG00000012913	SMG6	83	54.346	ENSXMAG00000010321	smg6	74	54.304	Xiphophorus_maculatus