EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMICG00000013879 (Gene tree)
Gene ID: 105877934
Gene Symbol: SF3B1
Alias: Hsh155|PRPF10|Prp10|SAP155|SF3b155
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Plus strand
Length: 40353 bases
Position: chr8:38811480-38851832
Accession: 105877934
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000035104	SF3b1	PF08920.10	5.5e-47	1	1
ENSMICP00000021569	SF3b1	PF08920.10	5.5e-47	1	1
ENSMICP00000012672	SF3b1	PF08920.10	5.5e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000013891	SF3B1-203	3930	-	ENSMICP00000012672	1309 (aa)	-	UPI000C2ECF04
ENSMICT00000053879	SF3B1-205	5141	-	ENSMICP00000021441	74 (aa)	-	UPI00004C968D
ENSMICT00000044185	SF3B1-204	3900	-	ENSMICP00000035104	1299 (aa)	-	UPI000C2EC968
ENSMICT00000038671	SF3B1-201	4334	XM_012776978	ENSMICP00000021569	1304 (aa)	XP_012632432	UPI00063FAAC1
ENSMICT00000065760	SF3B1-202	657	XM_012776980	ENSMICP00000043720	144 (aa)	XP_012632434	UPI0000141947

Gene Model

Click here to download ENSMICG00000013879's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000013879's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000013879	SF3B1	100	99.923	ENSG00000115524	SF3B1	100	100.000	Homo_sapiens
ENSMICG00000013879	SF3B1	100	93.622	ENSAPOG00000011894	sf3b1	100	93.622	Acanthochromis_polyacanthus
ENSMICG00000013879	SF3B1	99	99.846	ENSAMEG00000013809	SF3B1	100	99.387	Ailuropoda_melanoleuca
ENSMICG00000013879	SF3B1	100	93.216	ENSACIG00000020910	sf3b1	97	93.064	Amphilophus_citrinellus
ENSMICG00000013879	SF3B1	100	93.622	ENSAOCG00000004478	sf3b1	100	93.622	Amphiprion_ocellaris
ENSMICG00000013879	SF3B1	100	93.622	ENSAPEG00000012937	sf3b1	100	93.622	Amphiprion_percula
ENSMICG00000013879	SF3B1	100	93.693	ENSATEG00000020435	sf3b1	100	93.693	Anabas_testudineus
ENSMICG00000013879	SF3B1	99	99.305	ENSAPLG00000003993	SF3B1	100	98.696	Anas_platyrhynchos
ENSMICG00000013879	SF3B1	100	98.773	ENSACAG00000009612	SF3B1	100	98.773	Anolis_carolinensis
ENSMICG00000013879	SF3B1	100	99.923	ENSANAG00000021577	SF3B1	100	99.923	Aotus_nancymaae
ENSMICG00000013879	SF3B1	100	92.857	ENSACLG00000023470	sf3b1	100	92.705	Astatotilapia_calliptera
ENSMICG00000013879	SF3B1	100	94.149	ENSAMXG00000002219	sf3b1	100	93.997	Astyanax_mexicanus
ENSMICG00000013879	SF3B1	100	99.847	ENSBTAG00000008915	SF3B1	100	99.847	Bos_taurus
ENSMICG00000013879	SF3B1	100	65.481	WBGene00011605	sftb-1	99	65.556	Caenorhabditis_elegans
ENSMICG00000013879	SF3B1	100	99.923	ENSCJAG00000003902	SF3B1	100	99.923	Callithrix_jacchus
ENSMICG00000013879	SF3B1	100	99.923	ENSCAFG00000010826	SF3B1	100	99.923	Canis_familiaris
ENSMICG00000013879	SF3B1	100	99.923	ENSCAFG00020004750	SF3B1	100	99.923	Canis_lupus_dingo
ENSMICG00000013879	SF3B1	100	99.847	ENSCHIG00000015226	SF3B1	100	99.847	Capra_hircus
ENSMICG00000013879	SF3B1	100	99.847	ENSTSYG00000009214	SF3B1	100	99.847	Carlito_syrichta
ENSMICG00000013879	SF3B1	99	99.923	ENSCAPG00000006547	SF3B1	99	99.923	Cavia_aperea
ENSMICG00000013879	SF3B1	99	99.923	ENSCPOG00000009353	SF3B1	100	99.923	Cavia_porcellus
ENSMICG00000013879	SF3B1	100	99.923	ENSCCAG00000020506	SF3B1	100	99.923	Cebus_capucinus
ENSMICG00000013879	SF3B1	100	99.923	ENSCATG00000035735	SF3B1	100	99.923	Cercocebus_atys
ENSMICG00000013879	SF3B1	99	99.923	ENSCLAG00000014767	SF3B1	99	99.923	Chinchilla_lanigera
ENSMICG00000013879	SF3B1	100	99.923	ENSCSAG00000011505	SF3B1	100	99.923	Chlorocebus_sabaeus
ENSMICG00000013879	SF3B1	76	98.462	ENSCHOG00000009860	SF3B1	76	98.438	Choloepus_hoffmanni
ENSMICG00000013879	SF3B1	100	99.156	ENSCPBG00000021902	SF3B1	100	99.156	Chrysemys_picta_bellii
ENSMICG00000013879	SF3B1	69	78.170	ENSCING00000002558	-	99	78.883	Ciona_intestinalis
ENSMICG00000013879	SF3B1	99	80.183	ENSCSAVG00000002559	-	99	79.786	Ciona_savignyi
ENSMICG00000013879	SF3B1	100	99.923	ENSCANG00000029415	SF3B1	100	99.923	Colobus_angolensis_palliatus
ENSMICG00000013879	SF3B1	100	99.923	ENSCGRG00001016990	Sf3b1	100	99.923	Cricetulus_griseus_chok1gshd
ENSMICG00000013879	SF3B1	100	99.923	ENSCGRG00000005301	Sf3b1	100	99.923	Cricetulus_griseus_crigri
ENSMICG00000013879	SF3B1	100	90.015	ENSCSEG00000003860	sf3b1	100	89.939	Cynoglossus_semilaevis
ENSMICG00000013879	SF3B1	96	93.676	ENSCVAG00000003680	sf3b1	99	93.676	Cyprinodon_variegatus
ENSMICG00000013879	SF3B1	100	93.394	ENSDARG00000056138	sf3b1	100	93.318	Danio_rerio
ENSMICG00000013879	SF3B1	100	99.847	ENSDNOG00000011754	SF3B1	100	99.847	Dasypus_novemcinctus
ENSMICG00000013879	SF3B1	99	97.220	ENSDORG00000002399	Sf3b1	100	97.220	Dipodomys_ordii
ENSMICG00000013879	SF3B1	100	76.618	FBgn0031266	Sf3b1	100	76.618	Drosophila_melanogaster
ENSMICG00000013879	SF3B1	83	99.258	ENSETEG00000009188	SF3B1	100	99.258	Echinops_telfairi
ENSMICG00000013879	SF3B1	99	87.298	ENSEBUG00000004325	sf3b1	100	90.191	Eptatretus_burgeri
ENSMICG00000013879	SF3B1	100	99.847	ENSEASG00005020159	SF3B1	98	99.847	Equus_asinus_asinus
ENSMICG00000013879	SF3B1	100	99.847	ENSECAG00000021657	SF3B1	98	99.847	Equus_caballus
ENSMICG00000013879	SF3B1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSMICG00000013879	SF3B1	100	93.057	ENSELUG00000005977	sf3b1	98	92.906	Esox_lucius
ENSMICG00000013879	SF3B1	100	99.923	ENSFCAG00000005038	SF3B1	100	99.923	Felis_catus
ENSMICG00000013879	SF3B1	99	99.382	ENSFALG00000004281	SF3B1	99	99.382	Ficedula_albicollis
ENSMICG00000013879	SF3B1	100	99.923	ENSFDAG00000017510	SF3B1	100	99.923	Fukomys_damarensis
ENSMICG00000013879	SF3B1	100	92.938	ENSFHEG00000014333	sf3b1	100	92.938	Fundulus_heteroclitus
ENSMICG00000013879	SF3B1	100	93.607	ENSGMOG00000006773	sf3b1	100	93.607	Gadus_morhua
ENSMICG00000013879	SF3B1	100	99.310	ENSGALG00000008038	SF3B1	100	99.310	Gallus_gallus
ENSMICG00000013879	SF3B1	99	93.441	ENSGAFG00000000704	sf3b1	99	93.441	Gambusia_affinis
ENSMICG00000013879	SF3B1	100	93.674	ENSGACG00000008839	sf3b1	100	93.674	Gasterosteus_aculeatus
ENSMICG00000013879	SF3B1	100	98.477	ENSGAGG00000017478	SF3B1	100	98.477	Gopherus_agassizii
ENSMICG00000013879	SF3B1	99	93.093	ENSGGOG00000009264	SF3B1	99	94.419	Gorilla_gorilla
ENSMICG00000013879	SF3B1	99	92.922	ENSHBUG00000007705	sf3b1	99	92.770	Haplochromis_burtoni
ENSMICG00000013879	SF3B1	99	99.923	ENSHGLG00000008285	-	99	99.923	Heterocephalus_glaber_female
ENSMICG00000013879	SF3B1	99	97.915	ENSHGLG00100005535	-	99	97.915	Heterocephalus_glaber_male
ENSMICG00000013879	SF3B1	100	92.976	ENSHCOG00000016775	sf3b1	100	92.825	Hippocampus_comes
ENSMICG00000013879	SF3B1	100	93.997	ENSIPUG00000013171	sf3b1	100	93.997	Ictalurus_punctatus
ENSMICG00000013879	SF3B1	100	99.923	ENSSTOG00000011034	SF3B1	100	99.923	Ictidomys_tridecemlineatus
ENSMICG00000013879	SF3B1	99	99.845	ENSJJAG00000010903	Sf3b1	99	99.845	Jaculus_jaculus
ENSMICG00000013879	SF3B1	100	93.106	ENSKMAG00000004009	sf3b1	100	93.030	Kryptolebias_marmoratus
ENSMICG00000013879	SF3B1	100	93.588	ENSLBEG00000022208	sf3b1	100	93.435	Labrus_bergylta
ENSMICG00000013879	SF3B1	99	92.567	ENSLACG00000014832	SF3B1	99	92.567	Latimeria_chalumnae
ENSMICG00000013879	SF3B1	100	94.841	ENSLOCG00000003899	sf3b1	100	94.689	Lepisosteus_oculatus
ENSMICG00000013879	SF3B1	100	99.923	ENSLAFG00000001956	SF3B1	100	99.923	Loxodonta_africana
ENSMICG00000013879	SF3B1	100	99.083	ENSMMUG00000022430	SF3B1	99	99.923	Macaca_mulatta
ENSMICG00000013879	SF3B1	100	99.923	ENSMNEG00000042333	SF3B1	100	99.923	Macaca_nemestrina
ENSMICG00000013879	SF3B1	95	93.398	ENSMLEG00000026141	SF3B1	99	93.947	Mandrillus_leucophaeus
ENSMICG00000013879	SF3B1	100	93.617	ENSMAMG00000010241	sf3b1	100	93.617	Mastacembelus_armatus
ENSMICG00000013879	SF3B1	100	92.857	ENSMZEG00005021254	sf3b1	100	92.705	Maylandia_zebra
ENSMICG00000013879	SF3B1	99	98.687	ENSMGAG00000007017	SF3B1	99	98.687	Meleagris_gallopavo
ENSMICG00000013879	SF3B1	99	95.686	ENSMAUG00000009071	Sf3b1	99	95.686	Mesocricetus_auratus
ENSMICG00000013879	SF3B1	99	95.521	ENSMOCG00000000455	Sf3b1	99	95.521	Microtus_ochrogaster
ENSMICG00000013879	SF3B1	84	93.059	ENSMMOG00000000475	sf3b1	100	93.059	Mola_mola
ENSMICG00000013879	SF3B1	100	99.233	ENSMODG00000012275	SF3B1	100	99.233	Monodelphis_domestica
ENSMICG00000013879	SF3B1	100	93.541	ENSMALG00000017211	sf3b1	100	93.541	Monopterus_albus
ENSMICG00000013879	SF3B1	100	99.923	MGP_CAROLIEiJ_G0014141	Sf3b1	100	99.923	Mus_caroli
ENSMICG00000013879	SF3B1	100	99.923	ENSMUSG00000025982	Sf3b1	100	99.923	Mus_musculus
ENSMICG00000013879	SF3B1	100	99.923	MGP_SPRETEiJ_G0014947	Sf3b1	100	99.923	Mus_spretus
ENSMICG00000013879	SF3B1	100	99.923	ENSMPUG00000007799	SF3B1	100	99.923	Mustela_putorius_furo
ENSMICG00000013879	SF3B1	100	98.696	ENSMLUG00000000840	SF3B1	100	98.696	Myotis_lucifugus
ENSMICG00000013879	SF3B1	99	99.923	ENSNGAG00000021884	-	100	99.615	Nannospalax_galili
ENSMICG00000013879	SF3B1	100	89.109	ENSNBRG00000015816	sf3b1	100	89.109	Neolamprologus_brichardi
ENSMICG00000013879	SF3B1	100	99.923	ENSNLEG00000006861	SF3B1	100	99.923	Nomascus_leucogenys
ENSMICG00000013879	SF3B1	70	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSMICG00000013879	SF3B1	100	88.037	ENSOPRG00000008596	SF3B1	100	88.037	Ochotona_princeps
ENSMICG00000013879	SF3B1	100	99.923	ENSODEG00000011153	-	100	99.923	Octodon_degus
ENSMICG00000013879	SF3B1	100	92.857	ENSONIG00000013758	sf3b1	100	92.705	Oreochromis_niloticus
ENSMICG00000013879	SF3B1	83	98.893	ENSOCUG00000012722	-	96	98.893	Oryctolagus_cuniculus
ENSMICG00000013879	SF3B1	100	93.389	ENSORLG00000020219	sf3b1	100	93.389	Oryzias_latipes
ENSMICG00000013879	SF3B1	100	93.389	ENSORLG00020001746	sf3b1	100	93.389	Oryzias_latipes_hni
ENSMICG00000013879	SF3B1	64	90.952	ENSORLG00015001759	sf3b1	98	90.952	Oryzias_latipes_hsok
ENSMICG00000013879	SF3B1	100	93.394	ENSOMEG00000019231	sf3b1	100	93.394	Oryzias_melastigma
ENSMICG00000013879	SF3B1	100	99.847	ENSOARG00000015374	SF3B1	100	99.847	Ovis_aries
ENSMICG00000013879	SF3B1	100	99.923	ENSPPAG00000035007	SF3B1	100	99.923	Pan_paniscus
ENSMICG00000013879	SF3B1	100	99.923	ENSPPRG00000009090	SF3B1	100	99.923	Panthera_pardus
ENSMICG00000013879	SF3B1	100	99.923	ENSPTIG00000021557	SF3B1	100	99.923	Panthera_tigris_altaica
ENSMICG00000013879	SF3B1	99	91.378	ENSPTRG00000012771	SF3B1	99	91.378	Pan_troglodytes
ENSMICG00000013879	SF3B1	100	99.923	ENSPANG00000013417	SF3B1	100	99.923	Papio_anubis
ENSMICG00000013879	SF3B1	100	94.977	ENSPKIG00000000784	sf3b1	100	94.825	Paramormyrops_kingsleyae
ENSMICG00000013879	SF3B1	99	97.913	ENSPSIG00000017222	SF3B1	99	97.462	Pelodiscus_sinensis
ENSMICG00000013879	SF3B1	90	94.019	ENSPMGG00000004330	sf3b1	99	93.850	Periophthalmus_magnuspinnatus
ENSMICG00000013879	SF3B1	99	99.923	ENSPEMG00000010699	Sf3b1	100	99.923	Peromyscus_maniculatus_bairdii
ENSMICG00000013879	SF3B1	100	90.053	ENSPMAG00000001311	sf3b1	100	90.205	Petromyzon_marinus
ENSMICG00000013879	SF3B1	100	99.156	ENSPCIG00000010642	SF3B1	100	99.156	Phascolarctos_cinereus
ENSMICG00000013879	SF3B1	100	93.323	ENSPFOG00000000073	sf3b1	100	93.323	Poecilia_formosa
ENSMICG00000013879	SF3B1	100	93.394	ENSPLAG00000002293	sf3b1	100	93.394	Poecilia_latipinna
ENSMICG00000013879	SF3B1	100	93.394	ENSPMEG00000000446	sf3b1	98	93.394	Poecilia_mexicana
ENSMICG00000013879	SF3B1	100	93.470	ENSPREG00000019652	sf3b1	100	93.470	Poecilia_reticulata
ENSMICG00000013879	SF3B1	100	98.723	ENSPPYG00000013044	SF3B1	96	98.723	Pongo_abelii
ENSMICG00000013879	SF3B1	100	99.770	ENSPCAG00000009292	SF3B1	100	99.770	Procavia_capensis
ENSMICG00000013879	SF3B1	100	100.000	ENSPCOG00000024074	SF3B1	100	100.000	Propithecus_coquereli
ENSMICG00000013879	SF3B1	100	99.923	ENSPVAG00000008302	SF3B1	100	99.923	Pteropus_vampyrus
ENSMICG00000013879	SF3B1	100	92.781	ENSPNYG00000014939	sf3b1	100	92.629	Pundamilia_nyererei
ENSMICG00000013879	SF3B1	100	93.997	ENSPNAG00000008288	sf3b1	100	93.997	Pygocentrus_nattereri
ENSMICG00000013879	SF3B1	100	99.923	ENSRNOG00000013516	Sf3b1	100	99.923	Rattus_norvegicus
ENSMICG00000013879	SF3B1	99	96.373	ENSRBIG00000026096	SF3B1	100	96.160	Rhinopithecus_bieti
ENSMICG00000013879	SF3B1	100	99.923	ENSRROG00000031308	SF3B1	100	99.923	Rhinopithecus_roxellana
ENSMICG00000013879	SF3B1	100	99.923	ENSSBOG00000020080	SF3B1	100	99.923	Saimiri_boliviensis_boliviensis
ENSMICG00000013879	SF3B1	100	99.233	ENSSHAG00000017564	SF3B1	100	99.233	Sarcophilus_harrisii
ENSMICG00000013879	SF3B1	100	94.533	ENSSFOG00015021535	sf3b1	100	94.685	Scleropages_formosus
ENSMICG00000013879	SF3B1	99	92.955	ENSSMAG00000013977	sf3b1	99	92.803	Scophthalmus_maximus
ENSMICG00000013879	SF3B1	100	93.389	ENSSDUG00000017422	sf3b1	100	93.389	Seriola_dumerili
ENSMICG00000013879	SF3B1	100	93.313	ENSSLDG00000019495	sf3b1	100	93.313	Seriola_lalandi_dorsalis
ENSMICG00000013879	SF3B1	76	100.000	ENSSARG00000007016	SF3B1	76	100.000	Sorex_araneus
ENSMICG00000013879	SF3B1	100	99.003	ENSSPUG00000000410	SF3B1	100	99.003	Sphenodon_punctatus
ENSMICG00000013879	SF3B1	100	93.693	ENSSPAG00000010451	sf3b1	99	93.693	Stegastes_partitus
ENSMICG00000013879	SF3B1	91	99.495	ENSSSCG00000016075	SF3B1	100	99.914	Sus_scrofa
ENSMICG00000013879	SF3B1	100	99.233	ENSTGUG00000010553	SF3B1	100	99.233	Taeniopygia_guttata
ENSMICG00000013879	SF3B1	100	93.389	ENSTRUG00000015534	sf3b1	100	93.237	Takifugu_rubripes
ENSMICG00000013879	SF3B1	88	100.000	ENSTBEG00000008714	SF3B1	93	100.000	Tupaia_belangeri
ENSMICG00000013879	SF3B1	92	94.185	ENSTTRG00000003414	SF3B1	92	94.185	Tursiops_truncatus
ENSMICG00000013879	SF3B1	94	95.652	ENSUAMG00000018506	SF3B1	99	99.190	Ursus_americanus
ENSMICG00000013879	SF3B1	100	99.923	ENSUMAG00000020945	SF3B1	100	99.923	Ursus_maritimus
ENSMICG00000013879	SF3B1	100	91.794	ENSVPAG00000005798	SF3B1	100	91.794	Vicugna_pacos
ENSMICG00000013879	SF3B1	100	99.923	ENSVVUG00000025948	SF3B1	95	99.923	Vulpes_vulpes
ENSMICG00000013879	SF3B1	100	96.552	ENSXETG00000013339	sf3b1	100	96.552	Xenopus_tropicalis
ENSMICG00000013879	SF3B1	100	89.908	ENSXCOG00000018086	sf3b1	100	89.794	Xiphophorus_couchianus
ENSMICG00000013879	SF3B1	100	93.394	ENSXMAG00000007369	sf3b1	100	93.692	Xiphophorus_maculatus