EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMICG00000013970 (Gene tree)
Gene ID: 105878848
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Plus strand
Length: 81433 bases
Position: chr13:83487593-83569025
Accession: 105878848
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000012738	RRM_1	PF00076.22	1.4e-32	1	2
ENSMICP00000012738	RRM_1	PF00076.22	1.4e-32	2	2
ENSMICP00000042217	RRM_1	PF00076.22	2.5e-32	1	2
ENSMICP00000042217	RRM_1	PF00076.22	2.5e-32	2	2
ENSMICP00000023374	RRM_1	PF00076.22	3.5e-32	1	2
ENSMICP00000023374	RRM_1	PF00076.22	3.5e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000066871	PSPC1-203	2531	-	ENSMICP00000042217	466 (aa)	-	UPI000C2EBEA8
ENSMICT00000013970	PSPC1-202	1469	XM_012778619	ENSMICP00000012738	391 (aa)	XP_012634073	UPI000C2EBA33
ENSMICT00000047388	PSPC1-201	2233	XM_012778618	ENSMICP00000023374	521 (aa)	XP_012634072	UPI000643C3DA

Gene Model

Click here to download ENSMICG00000013970's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000013970's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMICG00000013970	PSPC1	81	74.528	ENSMICG00000027265	SFPQ	61	59.701
ENSMICG00000013970	PSPC1	88	63.814	ENSMICG00000000232	NONO	92	58.628

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000013970	PSPC1	100	98.470	ENSG00000121390	PSPC1	100	98.470	Homo_sapiens
ENSMICG00000013970	PSPC1	88	78.134	ENSAPOG00000015946	pspc1	92	68.390	Acanthochromis_polyacanthus
ENSMICG00000013970	PSPC1	100	98.088	ENSAMEG00000017420	PSPC1	100	98.088	Ailuropoda_melanoleuca
ENSMICG00000013970	PSPC1	98	63.846	ENSACIG00000018695	pspc1	87	60.722	Amphilophus_citrinellus
ENSMICG00000013970	PSPC1	83	80.556	ENSAOCG00000005279	pspc1	92	67.921	Amphiprion_ocellaris
ENSMICG00000013970	PSPC1	83	80.556	ENSAPEG00000015927	pspc1	92	68.347	Amphiprion_percula
ENSMICG00000013970	PSPC1	88	65.306	ENSATEG00000004878	pspc1	87	60.169	Anabas_testudineus
ENSMICG00000013970	PSPC1	81	75.786	ENSAPLG00000003643	SFPQ	83	60.515	Anas_platyrhynchos
ENSMICG00000013970	PSPC1	77	93.564	ENSAPLG00000006246	PSPC1	100	93.564	Anas_platyrhynchos
ENSMICG00000013970	PSPC1	73	70.732	ENSACAG00000013307	-	69	57.173	Anolis_carolinensis
ENSMICG00000013970	PSPC1	98	84.310	ENSACAG00000002093	PSPC1	99	84.381	Anolis_carolinensis
ENSMICG00000013970	PSPC1	100	97.505	ENSANAG00000000059	PSPC1	100	97.505	Aotus_nancymaae
ENSMICG00000013970	PSPC1	99	62.531	ENSACLG00000027220	pspc1	87	60.256	Astatotilapia_calliptera
ENSMICG00000013970	PSPC1	98	71.139	ENSAMXG00000036881	pspc1	91	70.122	Astyanax_mexicanus
ENSMICG00000013970	PSPC1	100	96.367	ENSBTAG00000003934	PSPC1	100	95.777	Bos_taurus
ENSMICG00000013970	PSPC1	100	97.505	ENSCJAG00000004554	PSPC1	100	97.505	Callithrix_jacchus
ENSMICG00000013970	PSPC1	100	98.088	ENSCAFG00020002009	PSPC1	100	98.088	Canis_lupus_dingo
ENSMICG00000013970	PSPC1	100	96.367	ENSCHIG00000016708	PSPC1	100	95.777	Capra_hircus
ENSMICG00000013970	PSPC1	77	91.791	ENSTSYG00000032882	PSPC1	93	85.511	Carlito_syrichta
ENSMICG00000013970	PSPC1	100	96.692	ENSCPOG00000000395	PSPC1	100	96.692	Cavia_porcellus
ENSMICG00000013970	PSPC1	100	97.505	ENSCCAG00000033498	PSPC1	100	97.505	Cebus_capucinus
ENSMICG00000013970	PSPC1	100	98.088	ENSCATG00000036434	PSPC1	100	98.088	Cercocebus_atys
ENSMICG00000013970	PSPC1	88	87.905	ENSCLAG00000005241	PSPC1	99	87.905	Chinchilla_lanigera
ENSMICG00000013970	PSPC1	98	96.632	ENSCHOG00000008913	PSPC1	100	91.013	Choloepus_hoffmanni
ENSMICG00000013970	PSPC1	99	86.907	ENSCPBG00000020859	PSPC1	99	88.031	Chrysemys_picta_bellii
ENSMICG00000013970	PSPC1	79	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSMICG00000013970	PSPC1	68	99.245	ENSCANG00000018948	PSPC1	88	99.245	Colobus_angolensis_palliatus
ENSMICG00000013970	PSPC1	100	96.743	ENSCGRG00001018368	Pspc1	100	96.743	Cricetulus_griseus_chok1gshd
ENSMICG00000013970	PSPC1	100	96.743	ENSCGRG00000011724	Pspc1	100	96.743	Cricetulus_griseus_crigri
ENSMICG00000013970	PSPC1	81	78.616	ENSCVAG00000007679	-	86	67.026	Cyprinodon_variegatus
ENSMICG00000013970	PSPC1	98	72.324	ENSDARG00000006621	pspc1	100	69.565	Danio_rerio
ENSMICG00000013970	PSPC1	100	96.941	ENSDNOG00000011078	PSPC1	100	96.941	Dasypus_novemcinctus
ENSMICG00000013970	PSPC1	100	93.690	ENSDORG00000016050	Pspc1	100	93.690	Dipodomys_ordii
ENSMICG00000013970	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSMICG00000013970	PSPC1	77	46.462	ENSEBUG00000010133	pspc1	77	48.980	Eptatretus_burgeri
ENSMICG00000013970	PSPC1	82	73.313	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSMICG00000013970	PSPC1	100	97.889	ENSEASG00005000119	PSPC1	100	97.889	Equus_asinus_asinus
ENSMICG00000013970	PSPC1	100	97.889	ENSECAG00000017286	PSPC1	100	97.889	Equus_caballus
ENSMICG00000013970	PSPC1	73	91.803	ENSEEUG00000011288	-	88	82.500	Erinaceus_europaeus
ENSMICG00000013970	PSPC1	99	72.070	ENSELUG00000003746	pspc1	88	73.542	Esox_lucius
ENSMICG00000013970	PSPC1	100	98.088	ENSFCAG00000027841	PSPC1	100	98.088	Felis_catus
ENSMICG00000013970	PSPC1	89	94.433	ENSFALG00000008750	PSPC1	88	94.433	Ficedula_albicollis
ENSMICG00000013970	PSPC1	100	94.818	ENSFDAG00000002617	PSPC1	100	94.818	Fukomys_damarensis
ENSMICG00000013970	PSPC1	74	82.986	ENSGMOG00000015074	pspc1	86	66.810	Gadus_morhua
ENSMICG00000013970	PSPC1	99	87.452	ENSGALG00000017142	PSPC1	91	93.277	Gallus_gallus
ENSMICG00000013970	PSPC1	98	68.608	ENSGAFG00000006327	pspc1	73	74.716	Gambusia_affinis
ENSMICG00000013970	PSPC1	85	73.414	ENSGACG00000014901	pspc1	93	73.433	Gasterosteus_aculeatus
ENSMICG00000013970	PSPC1	84	72.424	ENSGAGG00000017325	-	69	58.004	Gopherus_agassizii
ENSMICG00000013970	PSPC1	99	86.717	ENSGAGG00000019164	PSPC1	99	88.031	Gopherus_agassizii
ENSMICG00000013970	PSPC1	100	98.279	ENSGGOG00000003414	PSPC1	100	98.279	Gorilla_gorilla
ENSMICG00000013970	PSPC1	98	69.173	ENSHBUG00000001139	pspc1	87	71.092	Haplochromis_burtoni
ENSMICG00000013970	PSPC1	99	97.403	ENSHGLG00000018811	PSPC1	100	96.367	Heterocephalus_glaber_female
ENSMICG00000013970	PSPC1	89	93.103	ENSHGLG00100007962	PSPC1	100	93.103	Heterocephalus_glaber_male
ENSMICG00000013970	PSPC1	83	74.154	ENSHCOG00000013251	pspc1	83	71.390	Hippocampus_comes
ENSMICG00000013970	PSPC1	98	73.316	ENSIPUG00000013192	pspc1	91	74.380	Ictalurus_punctatus
ENSMICG00000013970	PSPC1	100	97.514	ENSSTOG00000026833	PSPC1	100	97.514	Ictidomys_tridecemlineatus
ENSMICG00000013970	PSPC1	100	96.935	ENSJJAG00000018334	Pspc1	100	96.935	Jaculus_jaculus
ENSMICG00000013970	PSPC1	88	55.508	ENSKMAG00000013525	-	84	55.724	Kryptolebias_marmoratus
ENSMICG00000013970	PSPC1	94	73.098	ENSLBEG00000004474	pspc1	89	66.260	Labrus_bergylta
ENSMICG00000013970	PSPC1	99	76.022	ENSLACG00000010762	PSPC1	88	84.914	Latimeria_chalumnae
ENSMICG00000013970	PSPC1	86	86.717	ENSLOCG00000010832	pspc1	93	82.664	Lepisosteus_oculatus
ENSMICG00000013970	PSPC1	100	96.935	ENSLAFG00000010968	PSPC1	100	96.935	Loxodonta_africana
ENSMICG00000013970	PSPC1	100	98.088	ENSMFAG00000032728	PSPC1	100	98.088	Macaca_fascicularis
ENSMICG00000013970	PSPC1	100	98.291	ENSMMUG00000020262	PSPC1	100	98.088	Macaca_mulatta
ENSMICG00000013970	PSPC1	100	98.088	ENSMNEG00000027401	PSPC1	100	98.088	Macaca_nemestrina
ENSMICG00000013970	PSPC1	100	98.997	ENSMLEG00000039043	PSPC1	99	100.000	Mandrillus_leucophaeus
ENSMICG00000013970	PSPC1	83	78.086	ENSMAMG00000004333	pspc1	88	68.041	Mastacembelus_armatus
ENSMICG00000013970	PSPC1	99	62.531	ENSMZEG00005005726	pspc1	87	60.256	Maylandia_zebra
ENSMICG00000013970	PSPC1	78	93.350	ENSMGAG00000015134	PSPC1	100	93.350	Meleagris_gallopavo
ENSMICG00000013970	PSPC1	99	91.183	ENSMAUG00000021067	Pspc1	100	91.183	Mesocricetus_auratus
ENSMICG00000013970	PSPC1	100	97.126	ENSMOCG00000006060	Pspc1	100	97.126	Microtus_ochrogaster
ENSMICG00000013970	PSPC1	87	54.839	ENSMMOG00000004352	pspc1	61	51.603	Mola_mola
ENSMICG00000013970	PSPC1	99	96.970	ENSMODG00000008029	PSPC1	78	96.495	Monodelphis_domestica
ENSMICG00000013970	PSPC1	83	77.469	ENSMALG00000008914	pspc1	88	69.379	Monopterus_albus
ENSMICG00000013970	PSPC1	100	96.941	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.210	Mus_caroli
ENSMICG00000013970	PSPC1	100	97.132	ENSMUSG00000021938	Pspc1	100	97.425	Mus_musculus
ENSMICG00000013970	PSPC1	100	97.132	MGP_PahariEiJ_G0030359	Pspc1	100	97.210	Mus_pahari
ENSMICG00000013970	PSPC1	100	96.941	MGP_SPRETEiJ_G0020232	Pspc1	100	97.210	Mus_spretus
ENSMICG00000013970	PSPC1	100	97.897	ENSMPUG00000013347	PSPC1	100	97.897	Mustela_putorius_furo
ENSMICG00000013970	PSPC1	100	96.008	ENSMLUG00000017663	PSPC1	100	96.008	Myotis_lucifugus
ENSMICG00000013970	PSPC1	100	96.935	ENSNGAG00000011271	Pspc1	100	96.935	Nannospalax_galili
ENSMICG00000013970	PSPC1	98	63.591	ENSNBRG00000014059	pspc1	76	69.207	Neolamprologus_brichardi
ENSMICG00000013970	PSPC1	100	98.279	ENSNLEG00000001294	PSPC1	100	98.279	Nomascus_leucogenys
ENSMICG00000013970	PSPC1	84	95.312	ENSMEUG00000000476	PSPC1	84	95.312	Notamacropus_eugenii
ENSMICG00000013970	PSPC1	100	85.086	ENSODEG00000007817	-	100	80.645	Octodon_degus
ENSMICG00000013970	PSPC1	99	88.286	ENSODEG00000019012	-	100	85.199	Octodon_degus
ENSMICG00000013970	PSPC1	98	70.513	ENSONIG00000012010	pspc1	87	70.339	Oreochromis_niloticus
ENSMICG00000013970	PSPC1	77	97.494	ENSOANG00000009017	-	100	97.494	Ornithorhynchus_anatinus
ENSMICG00000013970	PSPC1	99	66.667	ENSOANG00000011381	-	99	65.201	Ornithorhynchus_anatinus
ENSMICG00000013970	PSPC1	100	97.706	ENSOCUG00000006153	PSPC1	100	97.706	Oryctolagus_cuniculus
ENSMICG00000013970	PSPC1	83	79.012	ENSORLG00000004232	-	90	66.667	Oryzias_latipes
ENSMICG00000013970	PSPC1	83	78.395	ENSORLG00020000578	PSPC1	90	67.280	Oryzias_latipes_hni
ENSMICG00000013970	PSPC1	83	79.321	ENSORLG00015017480	pspc1	90	66.393	Oryzias_latipes_hsok
ENSMICG00000013970	PSPC1	54	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSMICG00000013970	PSPC1	100	98.853	ENSOGAG00000012643	PSPC1	100	98.853	Otolemur_garnettii
ENSMICG00000013970	PSPC1	100	91.778	ENSOARG00000014163	PSPC1	100	91.778	Ovis_aries
ENSMICG00000013970	PSPC1	85	99.094	ENSPPAG00000009836	PSPC1	97	96.512	Pan_paniscus
ENSMICG00000013970	PSPC1	100	98.088	ENSPPRG00000008833	PSPC1	100	98.088	Panthera_pardus
ENSMICG00000013970	PSPC1	100	83.493	ENSPTIG00000016917	PSPC1	100	83.493	Panthera_tigris_altaica
ENSMICG00000013970	PSPC1	100	98.219	ENSPTRG00000005677	PSPC1	100	98.219	Pan_troglodytes
ENSMICG00000013970	PSPC1	100	98.279	ENSPANG00000001992	PSPC1	100	98.279	Papio_anubis
ENSMICG00000013970	PSPC1	98	75.521	ENSPKIG00000003578	pspc1	89	75.732	Paramormyrops_kingsleyae
ENSMICG00000013970	PSPC1	99	86.981	ENSPSIG00000005168	PSPC1	89	93.790	Pelodiscus_sinensis
ENSMICG00000013970	PSPC1	84	67.584	ENSPMGG00000015135	pspc1	83	70.820	Periophthalmus_magnuspinnatus
ENSMICG00000013970	PSPC1	100	97.318	ENSPEMG00000015214	Pspc1	100	97.318	Peromyscus_maniculatus_bairdii
ENSMICG00000013970	PSPC1	71	44.755	ENSPMAG00000004618	pspc1	87	44.755	Petromyzon_marinus
ENSMICG00000013970	PSPC1	99	96.552	ENSPCIG00000017680	PSPC1	100	96.552	Phascolarctos_cinereus
ENSMICG00000013970	PSPC1	94	70.681	ENSPFOG00000003362	pspc1	93	67.742	Poecilia_formosa
ENSMICG00000013970	PSPC1	97	68.939	ENSPLAG00000011540	pspc1	92	67.742	Poecilia_latipinna
ENSMICG00000013970	PSPC1	76	68.687	ENSPLAG00000004407	-	52	60.590	Poecilia_latipinna
ENSMICG00000013970	PSPC1	76	68.667	ENSPMEG00000001025	-	52	60.638	Poecilia_mexicana
ENSMICG00000013970	PSPC1	97	68.434	ENSPMEG00000008322	pspc1	92	67.339	Poecilia_mexicana
ENSMICG00000013970	PSPC1	97	68.182	ENSPREG00000007786	pspc1	92	67.339	Poecilia_reticulata
ENSMICG00000013970	PSPC1	100	98.927	ENSPPYG00000005186	PSPC1	100	98.273	Pongo_abelii
ENSMICG00000013970	PSPC1	72	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSMICG00000013970	PSPC1	98	99.223	ENSPCOG00000014364	PSPC1	100	95.220	Propithecus_coquereli
ENSMICG00000013970	PSPC1	98	97.396	ENSPVAG00000005036	PSPC1	100	94.626	Pteropus_vampyrus
ENSMICG00000013970	PSPC1	99	62.779	ENSPNYG00000008893	pspc1	87	60.256	Pundamilia_nyererei
ENSMICG00000013970	PSPC1	98	73.385	ENSPNAG00000016511	pspc1	91	72.934	Pygocentrus_nattereri
ENSMICG00000013970	PSPC1	100	97.318	ENSRNOG00000020782	Pspc1	100	97.318	Rattus_norvegicus
ENSMICG00000013970	PSPC1	93	98.357	ENSRBIG00000036057	PSPC1	100	98.357	Rhinopithecus_bieti
ENSMICG00000013970	PSPC1	100	98.470	ENSRROG00000036334	PSPC1	100	98.470	Rhinopithecus_roxellana
ENSMICG00000013970	PSPC1	79	88.620	ENSSBOG00000028172	PSPC1	91	94.624	Saimiri_boliviensis_boliviensis
ENSMICG00000013970	PSPC1	100	91.238	ENSSHAG00000004696	PSPC1	100	91.238	Sarcophilus_harrisii
ENSMICG00000013970	PSPC1	83	85.583	ENSSFOG00015001395	pspc1	100	76.360	Scleropages_formosus
ENSMICG00000013970	PSPC1	88	74.286	ENSSMAG00000001761	pspc1	86	74.640	Scophthalmus_maximus
ENSMICG00000013970	PSPC1	83	81.173	ENSSDUG00000010651	pspc1	88	68.966	Seriola_dumerili
ENSMICG00000013970	PSPC1	83	74.303	ENSSLDG00000004284	pspc1	86	61.538	Seriola_lalandi_dorsalis
ENSMICG00000013970	PSPC1	100	89.635	ENSSARG00000000888	PSPC1	100	89.635	Sorex_araneus
ENSMICG00000013970	PSPC1	99	75.379	ENSSPUG00000008550	PSPC1	89	80.851	Sphenodon_punctatus
ENSMICG00000013970	PSPC1	82	66.044	ENSSPUG00000001136	-	66	52.201	Sphenodon_punctatus
ENSMICG00000013970	PSPC1	83	80.864	ENSSPAG00000001921	pspc1	88	68.866	Stegastes_partitus
ENSMICG00000013970	PSPC1	100	96.565	ENSSSCG00000009569	PSPC1	100	96.565	Sus_scrofa
ENSMICG00000013970	PSPC1	89	94.433	ENSTGUG00000011295	PSPC1	100	94.433	Taeniopygia_guttata
ENSMICG00000013970	PSPC1	83	71.296	ENSTRUG00000011335	pspc1	87	63.270	Takifugu_rubripes
ENSMICG00000013970	PSPC1	84	72.727	ENSTNIG00000010358	pspc1	87	65.021	Tetraodon_nigroviridis
ENSMICG00000013970	PSPC1	98	87.532	ENSTBEG00000002361	PSPC1	100	77.969	Tupaia_belangeri
ENSMICG00000013970	PSPC1	100	96.935	ENSTTRG00000003343	PSPC1	100	96.935	Tursiops_truncatus
ENSMICG00000013970	PSPC1	89	98.006	ENSUAMG00000012309	PSPC1	100	98.006	Ursus_americanus
ENSMICG00000013970	PSPC1	93	98.152	ENSUMAG00000013993	PSPC1	100	98.152	Ursus_maritimus
ENSMICG00000013970	PSPC1	77	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSMICG00000013970	PSPC1	100	98.088	ENSVVUG00000006414	PSPC1	100	98.187	Vulpes_vulpes
ENSMICG00000013970	PSPC1	98	68.010	ENSXCOG00000017438	pspc1	83	74.000	Xiphophorus_couchianus
ENSMICG00000013970	PSPC1	98	68.262	ENSXMAG00000007929	pspc1	83	74.286	Xiphophorus_maculatus