EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMICG00000016324 (Gene tree)
Gene ID: 105875595
Gene Symbol: TRUB1
Alias: PUS4
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Plus strand
Length: 37642 bases
Position: chr15:62121982-62159623
Accession: 105875595
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000014873	TruB_N	PF01509.18	2.2e-50	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000016318	TRUB1-201	3468	XM_012772740	ENSMICP00000014873	349 (aa)	XP_012628194	UPI000642D1FE

Gene Model

Click here to download ENSMICG00000016324's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000016324's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMICG00000016324	TRUB1	73	30.952	ENSMICG00000047032	TRUB2	88	30.952

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000016324	TRUB1	99	94.842	ENSG00000165832	TRUB1	99	94.842	Homo_sapiens
ENSMICG00000016324	TRUB1	70	68.163	ENSAPOG00000020565	trub1	89	67.886	Acanthochromis_polyacanthus
ENSMICG00000016324	TRUB1	96	94.379	ENSAMEG00000014931	TRUB1	99	94.017	Ailuropoda_melanoleuca
ENSMICG00000016324	TRUB1	82	56.842	ENSACIG00000003060	trub1	94	56.842	Amphilophus_citrinellus
ENSMICG00000016324	TRUB1	70	68.163	ENSAOCG00000017188	trub1	89	67.886	Amphiprion_ocellaris
ENSMICG00000016324	TRUB1	70	67.480	ENSAPEG00000015209	trub1	89	67.480	Amphiprion_percula
ENSMICG00000016324	TRUB1	69	68.465	ENSATEG00000023291	trub1	86	68.465	Anabas_testudineus
ENSMICG00000016324	TRUB1	79	76.000	ENSAPLG00000006808	TRUB1	99	76.000	Anas_platyrhynchos
ENSMICG00000016324	TRUB1	77	71.747	ENSACAG00000009282	TRUB1	97	71.747	Anolis_carolinensis
ENSMICG00000016324	TRUB1	96	95.509	ENSANAG00000022870	TRUB1	99	93.983	Aotus_nancymaae
ENSMICG00000016324	TRUB1	72	66.667	ENSACLG00000000823	trub1	91	66.667	Astatotilapia_calliptera
ENSMICG00000016324	TRUB1	77	65.556	ENSAMXG00000015845	trub1	90	65.556	Astyanax_mexicanus
ENSMICG00000016324	TRUB1	98	93.586	ENSBTAG00000012955	TRUB1	100	93.182	Bos_taurus
ENSMICG00000016324	TRUB1	99	94.000	ENSCJAG00000047815	TRUB1	99	94.000	Callithrix_jacchus
ENSMICG00000016324	TRUB1	100	93.429	ENSCAFG00000011688	TRUB1	100	93.429	Canis_familiaris
ENSMICG00000016324	TRUB1	100	93.714	ENSCAFG00020013237	TRUB1	100	93.714	Canis_lupus_dingo
ENSMICG00000016324	TRUB1	98	93.294	ENSCHIG00000020884	TRUB1	100	93.162	Capra_hircus
ENSMICG00000016324	TRUB1	99	92.000	ENSTSYG00000000446	TRUB1	99	91.429	Carlito_syrichta
ENSMICG00000016324	TRUB1	72	84.585	ENSCAPG00000017088	TRUB1	99	84.585	Cavia_aperea
ENSMICG00000016324	TRUB1	71	80.567	ENSCPOG00000030129	-	86	78.947	Cavia_porcellus
ENSMICG00000016324	TRUB1	70	85.656	ENSCPOG00000040236	-	100	85.656	Cavia_porcellus
ENSMICG00000016324	TRUB1	96	94.643	ENSCCAG00000028842	TRUB1	99	93.143	Cebus_capucinus
ENSMICG00000016324	TRUB1	99	94.556	ENSCATG00000033431	TRUB1	99	94.556	Cercocebus_atys
ENSMICG00000016324	TRUB1	70	89.344	ENSCLAG00000008664	TRUB1	100	89.344	Chinchilla_lanigera
ENSMICG00000016324	TRUB1	99	94.842	ENSCSAG00000004891	TRUB1	99	94.842	Chlorocebus_sabaeus
ENSMICG00000016324	TRUB1	100	78.571	ENSCHOG00000011931	TRUB1	100	78.571	Choloepus_hoffmanni
ENSMICG00000016324	TRUB1	78	79.779	ENSCPBG00000003051	TRUB1	94	79.779	Chrysemys_picta_bellii
ENSMICG00000016324	TRUB1	99	94.842	ENSCANG00000029445	TRUB1	99	94.842	Colobus_angolensis_palliatus
ENSMICG00000016324	TRUB1	81	79.004	ENSCGRG00001010322	-	80	78.983	Cricetulus_griseus_chok1gshd
ENSMICG00000016324	TRUB1	73	87.059	ENSCGRG00001016772	-	90	78.859	Cricetulus_griseus_chok1gshd
ENSMICG00000016324	TRUB1	81	88.256	ENSCGRG00000010806	Trub1	91	87.584	Cricetulus_griseus_crigri
ENSMICG00000016324	TRUB1	73	62.500	ENSCSEG00000011261	trub1	83	62.500	Cynoglossus_semilaevis
ENSMICG00000016324	TRUB1	70	67.755	ENSCVAG00000008791	trub1	75	67.755	Cyprinodon_variegatus
ENSMICG00000016324	TRUB1	75	66.160	ENSDARG00000053805	trub1	90	66.160	Danio_rerio
ENSMICG00000016324	TRUB1	97	87.059	ENSDNOG00000001069	TRUB1	100	86.325	Dasypus_novemcinctus
ENSMICG00000016324	TRUB1	99	90.116	ENSDORG00000010431	Trub1	98	89.535	Dipodomys_ordii
ENSMICG00000016324	TRUB1	80	77.451	ENSETEG00000009183	TRUB1	80	78.431	Echinops_telfairi
ENSMICG00000016324	TRUB1	97	94.362	ENSEASG00005014739	TRUB1	100	94.000	Equus_asinus_asinus
ENSMICG00000016324	TRUB1	97	94.362	ENSECAG00000007177	TRUB1	100	94.000	Equus_caballus
ENSMICG00000016324	TRUB1	99	76.816	ENSEEUG00000013993	TRUB1	99	78.212	Erinaceus_europaeus
ENSMICG00000016324	TRUB1	70	69.388	ENSELUG00000000502	trub1	86	69.388	Esox_lucius
ENSMICG00000016324	TRUB1	96	94.627	ENSFCAG00000031927	TRUB1	99	94.524	Felis_catus
ENSMICG00000016324	TRUB1	69	76.667	ENSFALG00000002232	TRUB1	92	76.667	Ficedula_albicollis
ENSMICG00000016324	TRUB1	70	88.115	ENSFDAG00000008140	TRUB1	100	88.115	Fukomys_damarensis
ENSMICG00000016324	TRUB1	70	66.122	ENSFHEG00000004016	trub1	84	66.122	Fundulus_heteroclitus
ENSMICG00000016324	TRUB1	78	74.632	ENSGALG00000009091	TRUB1	96	74.632	Gallus_gallus
ENSMICG00000016324	TRUB1	68	64.583	ENSGAFG00000009193	trub1	86	63.934	Gambusia_affinis
ENSMICG00000016324	TRUB1	56	67.692	ENSGACG00000015387	trub1	96	67.692	Gasterosteus_aculeatus
ENSMICG00000016324	TRUB1	89	73.786	ENSGAGG00000009758	TRUB1	81	78.521	Gopherus_agassizii
ENSMICG00000016324	TRUB1	99	95.415	ENSGGOG00000004583	TRUB1	99	95.415	Gorilla_gorilla
ENSMICG00000016324	TRUB1	72	66.667	ENSHBUG00000016787	trub1	91	66.667	Haplochromis_burtoni
ENSMICG00000016324	TRUB1	100	87.679	ENSHGLG00000015314	TRUB1	100	87.679	Heterocephalus_glaber_female
ENSMICG00000016324	TRUB1	70	86.475	ENSHGLG00100009183	TRUB1	100	86.475	Heterocephalus_glaber_male
ENSMICG00000016324	TRUB1	70	68.163	ENSHCOG00000017877	trub1	89	68.163	Hippocampus_comes
ENSMICG00000016324	TRUB1	79	64.855	ENSIPUG00000017559	trub1	97	64.855	Ictalurus_punctatus
ENSMICG00000016324	TRUB1	87	96.026	ENSSTOG00000003641	TRUB1	100	89.143	Ictidomys_tridecemlineatus
ENSMICG00000016324	TRUB1	86	91.333	ENSJJAG00000011800	Trub1	88	91.333	Jaculus_jaculus
ENSMICG00000016324	TRUB1	72	65.370	ENSKMAG00000006232	trub1	92	65.370	Kryptolebias_marmoratus
ENSMICG00000016324	TRUB1	76	63.910	ENSLBEG00000026722	trub1	92	63.910	Labrus_bergylta
ENSMICG00000016324	TRUB1	79	73.551	ENSLACG00000014885	TRUB1	92	73.551	Latimeria_chalumnae
ENSMICG00000016324	TRUB1	78	70.696	ENSLOCG00000012979	trub1	93	70.696	Lepisosteus_oculatus
ENSMICG00000016324	TRUB1	99	79.272	ENSLAFG00000015452	TRUB1	99	80.112	Loxodonta_africana
ENSMICG00000016324	TRUB1	99	94.842	ENSMFAG00000031767	TRUB1	99	94.842	Macaca_fascicularis
ENSMICG00000016324	TRUB1	99	94.842	ENSMMUG00000001902	TRUB1	99	94.842	Macaca_mulatta
ENSMICG00000016324	TRUB1	99	90.544	ENSMNEG00000044646	TRUB1	99	90.544	Macaca_nemestrina
ENSMICG00000016324	TRUB1	99	94.556	ENSMLEG00000042655	TRUB1	99	94.556	Mandrillus_leucophaeus
ENSMICG00000016324	TRUB1	72	66.667	ENSMZEG00005024095	trub1	91	66.667	Maylandia_zebra
ENSMICG00000016324	TRUB1	78	73.897	ENSMGAG00000011135	TRUB1	93	73.897	Meleagris_gallopavo
ENSMICG00000016324	TRUB1	86	84.950	ENSMAUG00000011101	Trub1	89	85.050	Mesocricetus_auratus
ENSMICG00000016324	TRUB1	93	81.818	ENSMOCG00000017759	Trub1	91	86.755	Microtus_ochrogaster
ENSMICG00000016324	TRUB1	81	83.392	ENSMODG00000009676	TRUB1	81	81.570	Monodelphis_domestica
ENSMICG00000016324	TRUB1	100	81.948	MGP_CAROLIEiJ_G0023100	Trub1	100	80.516	Mus_caroli
ENSMICG00000016324	TRUB1	100	80.802	ENSMUSG00000025086	Trub1	100	79.370	Mus_musculus
ENSMICG00000016324	TRUB1	100	81.948	MGP_PahariEiJ_G0014588	Trub1	100	80.516	Mus_pahari
ENSMICG00000016324	TRUB1	100	81.089	MGP_SPRETEiJ_G0024021	Trub1	100	79.656	Mus_spretus
ENSMICG00000016324	TRUB1	96	95.238	ENSMPUG00000003556	TRUB1	99	94.842	Mustela_putorius_furo
ENSMICG00000016324	TRUB1	96	89.222	ENSMLUG00000017686	TRUB1	99	87.143	Myotis_lucifugus
ENSMICG00000016324	TRUB1	100	86.533	ENSNGAG00000018682	Trub1	100	86.533	Nannospalax_galili
ENSMICG00000016324	TRUB1	70	67.886	ENSNBRG00000023393	trub1	88	67.886	Neolamprologus_brichardi
ENSMICG00000016324	TRUB1	96	95.238	ENSNLEG00000016345	TRUB1	99	94.556	Nomascus_leucogenys
ENSMICG00000016324	TRUB1	58	90.547	ENSMEUG00000006603	TRUB1	78	87.678	Notamacropus_eugenii
ENSMICG00000016324	TRUB1	100	78.797	ENSOPRG00000009371	TRUB1	100	78.797	Ochotona_princeps
ENSMICG00000016324	TRUB1	99	85.057	ENSODEG00000010854	TRUB1	99	85.057	Octodon_degus
ENSMICG00000016324	TRUB1	70	67.073	ENSONIG00000007249	trub1	89	67.073	Oreochromis_niloticus
ENSMICG00000016324	TRUB1	79	80.657	ENSOANG00000001556	TRUB1	93	78.445	Ornithorhynchus_anatinus
ENSMICG00000016324	TRUB1	100	85.673	ENSOCUG00000009456	TRUB1	100	85.673	Oryctolagus_cuniculus
ENSMICG00000016324	TRUB1	69	68.880	ENSORLG00000029719	trub1	86	68.880	Oryzias_latipes
ENSMICG00000016324	TRUB1	69	68.465	ENSORLG00020016767	trub1	86	68.182	Oryzias_latipes_hni
ENSMICG00000016324	TRUB1	69	68.465	ENSORLG00015014728	trub1	87	68.182	Oryzias_latipes_hsok
ENSMICG00000016324	TRUB1	74	66.023	ENSOMEG00000014556	trub1	90	66.148	Oryzias_melastigma
ENSMICG00000016324	TRUB1	100	95.143	ENSOGAG00000015895	TRUB1	100	95.143	Otolemur_garnettii
ENSMICG00000016324	TRUB1	97	89.595	ENSOARG00000015591	TRUB1	100	89.076	Ovis_aries
ENSMICG00000016324	TRUB1	99	95.415	ENSPPAG00000043645	TRUB1	99	95.415	Pan_paniscus
ENSMICG00000016324	TRUB1	96	94.030	ENSPPRG00000007096	TRUB1	99	93.948	Panthera_pardus
ENSMICG00000016324	TRUB1	96	94.328	ENSPTIG00000006378	TRUB1	99	94.236	Panthera_tigris_altaica
ENSMICG00000016324	TRUB1	99	95.415	ENSPTRG00000002964	TRUB1	99	95.415	Pan_troglodytes
ENSMICG00000016324	TRUB1	99	94.556	ENSPANG00000020712	TRUB1	99	94.556	Papio_anubis
ENSMICG00000016324	TRUB1	78	77.574	ENSPSIG00000012877	TRUB1	93	77.574	Pelodiscus_sinensis
ENSMICG00000016324	TRUB1	70	66.122	ENSPMGG00000000075	trub1	88	66.122	Periophthalmus_magnuspinnatus
ENSMICG00000016324	TRUB1	86	85.382	ENSPEMG00000011156	Trub1	89	85.382	Peromyscus_maniculatus_bairdii
ENSMICG00000016324	TRUB1	81	82.686	ENSPCIG00000009729	TRUB1	79	81.661	Phascolarctos_cinereus
ENSMICG00000016324	TRUB1	70	65.714	ENSPFOG00000009950	trub1	90	65.714	Poecilia_formosa
ENSMICG00000016324	TRUB1	70	65.714	ENSPLAG00000013855	trub1	86	65.714	Poecilia_latipinna
ENSMICG00000016324	TRUB1	70	65.714	ENSPMEG00000009064	trub1	88	65.714	Poecilia_mexicana
ENSMICG00000016324	TRUB1	70	66.531	ENSPREG00000003343	trub1	88	66.531	Poecilia_reticulata
ENSMICG00000016324	TRUB1	96	95.536	ENSPPYG00000002676	TRUB1	99	94.842	Pongo_abelii
ENSMICG00000016324	TRUB1	99	75.284	ENSPCAG00000008427	TRUB1	99	75.568	Procavia_capensis
ENSMICG00000016324	TRUB1	100	92.837	ENSPCOG00000024360	TRUB1	100	92.837	Propithecus_coquereli
ENSMICG00000016324	TRUB1	75	93.536	ENSPVAG00000007575	TRUB1	100	93.536	Pteropus_vampyrus
ENSMICG00000016324	TRUB1	72	66.667	ENSPNYG00000018614	trub1	91	66.667	Pundamilia_nyererei
ENSMICG00000016324	TRUB1	74	59.231	ENSPNAG00000006881	trub1	88	58.088	Pygocentrus_nattereri
ENSMICG00000016324	TRUB1	100	82.235	ENSRNOG00000017321	Trub1	100	80.516	Rattus_norvegicus
ENSMICG00000016324	TRUB1	99	85.387	ENSRBIG00000033423	TRUB1	99	85.387	Rhinopithecus_bieti
ENSMICG00000016324	TRUB1	99	94.556	ENSRROG00000033902	TRUB1	99	94.556	Rhinopithecus_roxellana
ENSMICG00000016324	TRUB1	96	94.940	ENSSBOG00000024237	TRUB1	99	93.429	Saimiri_boliviensis_boliviensis
ENSMICG00000016324	TRUB1	72	81.423	ENSSHAG00000009346	TRUB1	85	81.423	Sarcophilus_harrisii
ENSMICG00000016324	TRUB1	70	69.959	ENSSFOG00015022124	trub1	83	69.959	Scleropages_formosus
ENSMICG00000016324	TRUB1	70	68.699	ENSSMAG00000001020	trub1	88	68.699	Scophthalmus_maximus
ENSMICG00000016324	TRUB1	69	68.750	ENSSDUG00000016414	trub1	88	68.699	Seriola_dumerili
ENSMICG00000016324	TRUB1	69	69.167	ENSSLDG00000015486	trub1	88	69.106	Seriola_lalandi_dorsalis
ENSMICG00000016324	TRUB1	80	77.500	ENSSPUG00000001642	TRUB1	96	77.500	Sphenodon_punctatus
ENSMICG00000016324	TRUB1	75	66.160	ENSSPAG00000001217	trub1	94	66.160	Stegastes_partitus
ENSMICG00000016324	TRUB1	100	89.429	ENSSSCG00000010653	TRUB1	100	89.429	Sus_scrofa
ENSMICG00000016324	TRUB1	77	76.296	ENSTGUG00000010971	TRUB1	97	76.103	Taeniopygia_guttata
ENSMICG00000016324	TRUB1	72	78.261	ENSTBEG00000002880	TRUB1	99	78.261	Tupaia_belangeri
ENSMICG00000016324	TRUB1	72	90.837	ENSTTRG00000005767	TRUB1	100	92.424	Tursiops_truncatus
ENSMICG00000016324	TRUB1	96	95.833	ENSUAMG00000024876	TRUB1	99	95.415	Ursus_americanus
ENSMICG00000016324	TRUB1	96	90.179	ENSUMAG00000002411	TRUB1	99	91.404	Ursus_maritimus
ENSMICG00000016324	TRUB1	100	93.143	ENSVPAG00000005507	TRUB1	100	93.143	Vicugna_pacos
ENSMICG00000016324	TRUB1	100	91.714	ENSVVUG00000010085	TRUB1	84	92.571	Vulpes_vulpes
ENSMICG00000016324	TRUB1	78	66.544	ENSXETG00000023828	trub1	98	66.544	Xenopus_tropicalis
ENSMICG00000016324	TRUB1	68	65.272	ENSXCOG00000017847	trub1	86	64.609	Xiphophorus_couchianus
ENSMICG00000016324	TRUB1	70	64.898	ENSXMAG00000014701	trub1	88	64.898	Xiphophorus_maculatus