EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMICG00000016641 (Gene tree)
Gene ID: 105880280
Gene Symbol: CHD6
Alias: CHD5|FLJ22369|KIAA1335|RIGB|dJ620E11.1
Full Name: chromodomain helicase DNA binding protein 6
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Plus strand
Length: 136914 bases
Position: chr18:11531518-11668431
Accession: 105880280
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000018872	ResIII	PF04851.15	1.8e-08	1	1
ENSMICP00000015173	ResIII	PF04851.15	9.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000016651	CHD6-201	8172	XM_012781240	ENSMICP00000015173	2723 (aa)	XP_012636694	UPI00085B3C13
ENSMICT00000028808	CHD6-202	1641	-	ENSMICP00000018872	546 (aa)	-	UPI00085B2463

Gene Model

Click here to download ENSMICG00000016641's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000016641's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMICG00000016641	CHD6	68	41.842	ENSMICG00000002497	CHD1L	89	41.837
ENSMICG00000016641	CHD6	82	40.812	ENSMICG00000000332	-	52	34.924
ENSMICG00000016641	CHD6	99	72.711	ENSMICG00000002430	CHD7	71	65.217
ENSMICG00000016641	CHD6	75	40.048	ENSMICG00000015768	SMARCA1	50	40.989
ENSMICG00000016641	CHD6	69	34.157	ENSMICG00000046554	-	96	36.921
ENSMICG00000016641	CHD6	72	41.162	ENSMICG00000003971	SMARCA5	50	42.750
ENSMICG00000016641	CHD6	99	72.344	ENSMICG00000007735	CHD8	70	63.168
ENSMICG00000016641	CHD6	99	71.560	ENSMICG00000016679	CHD9	90	46.309

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000016641	CHD6	99	94.270	ENSG00000124177	CHD6	99	98.837	Homo_sapiens
ENSMICG00000016641	CHD6	99	82.234	ENSAPOG00000013736	chd6	67	72.472	Acanthochromis_polyacanthus
ENSMICG00000016641	CHD6	99	92.661	ENSAMEG00000009496	CHD6	100	91.535	Ailuropoda_melanoleuca
ENSMICG00000016641	CHD6	99	81.868	ENSATEG00000005608	chd6	62	77.395	Anabas_testudineus
ENSMICG00000016641	CHD6	99	89.174	ENSAPLG00000015592	CHD6	99	72.238	Anas_platyrhynchos
ENSMICG00000016641	CHD6	99	80.741	ENSACAG00000006842	CHD6	99	67.332	Anolis_carolinensis
ENSMICG00000016641	CHD6	100	99.084	ENSANAG00000037548	CHD6	100	99.084	Aotus_nancymaae
ENSMICG00000016641	CHD6	94	86.602	ENSAMXG00000009576	chd6	77	70.000	Astyanax_mexicanus
ENSMICG00000016641	CHD6	99	92.477	ENSBTAG00000005733	CHD6	100	87.884	Bos_taurus
ENSMICG00000016641	CHD6	100	98.901	ENSCJAG00000017920	CHD6	100	98.901	Callithrix_jacchus
ENSMICG00000016641	CHD6	99	92.661	ENSCAFG00000009236	CHD6	100	91.425	Canis_familiaris
ENSMICG00000016641	CHD6	100	97.436	ENSCAFG00020012906	CHD6	100	97.436	Canis_lupus_dingo
ENSMICG00000016641	CHD6	99	92.844	ENSCHIG00000017606	CHD6	100	87.738	Capra_hircus
ENSMICG00000016641	CHD6	83	93.181	ENSTSYG00000014635	CHD6	99	93.181	Carlito_syrichta
ENSMICG00000016641	CHD6	99	92.661	ENSCPOG00000015641	CHD6	99	91.617	Cavia_porcellus
ENSMICG00000016641	CHD6	100	99.084	ENSCCAG00000036828	CHD6	100	99.084	Cebus_capucinus
ENSMICG00000016641	CHD6	100	99.084	ENSCATG00000039248	CHD6	100	99.084	Cercocebus_atys
ENSMICG00000016641	CHD6	99	92.477	ENSCLAG00000013743	CHD6	99	91.415	Chinchilla_lanigera
ENSMICG00000016641	CHD6	99	94.011	ENSCSAG00000013997	CHD6	99	94.011	Chlorocebus_sabaeus
ENSMICG00000016641	CHD6	99	86.972	ENSCHOG00000012647	CHD6	95	89.267	Choloepus_hoffmanni
ENSMICG00000016641	CHD6	99	89.358	ENSCPBG00000019382	CHD6	100	72.939	Chrysemys_picta_bellii
ENSMICG00000016641	CHD6	100	99.084	ENSCANG00000043435	CHD6	100	99.084	Colobus_angolensis_palliatus
ENSMICG00000016641	CHD6	99	91.927	ENSCGRG00001002694	Chd6	99	89.871	Cricetulus_griseus_chok1gshd
ENSMICG00000016641	CHD6	100	97.985	ENSCGRG00000006749	-	100	97.985	Cricetulus_griseus_crigri
ENSMICG00000016641	CHD6	91	88.956	ENSDARG00000017244	chd6	79	73.668	Danio_rerio
ENSMICG00000016641	CHD6	99	92.110	ENSDNOG00000004176	CHD6	99	90.004	Dasypus_novemcinctus
ENSMICG00000016641	CHD6	100	97.802	ENSEASG00005023433	CHD6	100	97.802	Equus_asinus_asinus
ENSMICG00000016641	CHD6	99	92.661	ENSECAG00000011761	CHD6	99	92.578	Equus_caballus
ENSMICG00000016641	CHD6	94	85.243	ENSELUG00000012309	chd6	88	79.740	Esox_lucius
ENSMICG00000016641	CHD6	99	92.661	ENSFCAG00000003572	CHD6	100	91.389	Felis_catus
ENSMICG00000016641	CHD6	99	88.807	ENSFALG00000012563	CHD6	93	77.879	Ficedula_albicollis
ENSMICG00000016641	CHD6	99	92.294	ENSFDAG00000013791	CHD6	99	91.802	Fukomys_damarensis
ENSMICG00000016641	CHD6	89	83.402	ENSGMOG00000011715	chd6	84	70.818	Gadus_morhua
ENSMICG00000016641	CHD6	94	80.233	ENSGACG00000000037	chd6	86	69.975	Gasterosteus_aculeatus
ENSMICG00000016641	CHD6	61	94.012	ENSGAGG00000007475	-	79	94.169	Gopherus_agassizii
ENSMICG00000016641	CHD6	100	99.084	ENSGGOG00000013123	CHD6	100	99.084	Gorilla_gorilla
ENSMICG00000016641	CHD6	99	81.136	ENSHBUG00000014701	chd6	62	76.944	Haplochromis_burtoni
ENSMICG00000016641	CHD6	99	92.477	ENSHGLG00000004548	CHD6	99	92.063	Heterocephalus_glaber_female
ENSMICG00000016641	CHD6	99	92.477	ENSHGLG00100006401	CHD6	99	92.063	Heterocephalus_glaber_male
ENSMICG00000016641	CHD6	94	85.243	ENSIPUG00000003692	chd6	77	73.181	Ictalurus_punctatus
ENSMICG00000016641	CHD6	99	93.028	ENSSTOG00000013382	CHD6	99	92.430	Ictidomys_tridecemlineatus
ENSMICG00000016641	CHD6	99	84.220	ENSLACG00000010881	CHD6	83	77.476	Latimeria_chalumnae
ENSMICG00000016641	CHD6	94	86.990	ENSLOCG00000007386	chd6	78	75.330	Lepisosteus_oculatus
ENSMICG00000016641	CHD6	99	92.294	ENSLAFG00000012144	CHD6	99	91.393	Loxodonta_africana
ENSMICG00000016641	CHD6	100	99.084	ENSMFAG00000032830	CHD6	100	99.084	Macaca_fascicularis
ENSMICG00000016641	CHD6	100	99.084	ENSMMUG00000020458	CHD6	100	99.084	Macaca_mulatta
ENSMICG00000016641	CHD6	100	99.084	ENSMNEG00000040847	CHD6	100	99.084	Macaca_nemestrina
ENSMICG00000016641	CHD6	100	99.084	ENSMLEG00000031965	CHD6	100	99.084	Mandrillus_leucophaeus
ENSMICG00000016641	CHD6	99	81.502	ENSMAMG00000013111	chd6	63	75.484	Mastacembelus_armatus
ENSMICG00000016641	CHD6	99	88.645	ENSMGAG00000001121	CHD6	100	72.145	Meleagris_gallopavo
ENSMICG00000016641	CHD6	99	91.743	ENSMOCG00000014004	-	98	93.722	Microtus_ochrogaster
ENSMICG00000016641	CHD6	99	91.376	ENSMODG00000000720	-	99	80.958	Monodelphis_domestica
ENSMICG00000016641	CHD6	99	91.560	MGP_CAROLIEiJ_G0024604	Chd6	99	94.889	Mus_caroli
ENSMICG00000016641	CHD6	99	91.560	ENSMUSG00000057133	Chd6	99	94.804	Mus_musculus
ENSMICG00000016641	CHD6	99	91.743	MGP_PahariEiJ_G0026048	Chd6	99	95.230	Mus_pahari
ENSMICG00000016641	CHD6	99	91.560	MGP_SPRETEiJ_G0025526	Chd6	99	94.889	Mus_spretus
ENSMICG00000016641	CHD6	99	92.661	ENSMPUG00000017695	CHD6	100	90.205	Mustela_putorius_furo
ENSMICG00000016641	CHD6	99	92.294	ENSMLUG00000016247	CHD6	100	90.546	Myotis_lucifugus
ENSMICG00000016641	CHD6	99	81.365	ENSNBRG00000013839	chd6	79	72.247	Neolamprologus_brichardi
ENSMICG00000016641	CHD6	99	92.743	ENSNLEG00000006496	CHD6	100	92.458	Nomascus_leucogenys
ENSMICG00000016641	CHD6	99	88.059	ENSOPRG00000013376	-	99	88.059	Ochotona_princeps
ENSMICG00000016641	CHD6	99	81.319	ENSONIG00000000393	chd6	87	74.441	Oreochromis_niloticus
ENSMICG00000016641	CHD6	99	89.174	ENSOANG00000014347	CHD6	99	69.993	Ornithorhynchus_anatinus
ENSMICG00000016641	CHD6	99	92.844	ENSOCUG00000012394	CHD6	99	90.425	Oryctolagus_cuniculus
ENSMICG00000016641	CHD6	96	84.190	ENSORLG00020021891	chd6	99	84.190	Oryzias_latipes_hni
ENSMICG00000016641	CHD6	99	93.921	ENSOGAG00000002427	CHD6	99	93.896	Otolemur_garnettii
ENSMICG00000016641	CHD6	99	92.844	ENSOARG00000002597	CHD6	99	85.851	Ovis_aries
ENSMICG00000016641	CHD6	99	92.661	ENSPPRG00000014756	CHD6	100	91.499	Panthera_pardus
ENSMICG00000016641	CHD6	99	92.661	ENSPTIG00000011094	CHD6	100	91.389	Panthera_tigris_altaica
ENSMICG00000016641	CHD6	100	99.084	ENSPTRG00000013504	CHD6	99	99.084	Pan_troglodytes
ENSMICG00000016641	CHD6	100	99.267	ENSPANG00000025554	CHD6	100	99.267	Papio_anubis
ENSMICG00000016641	CHD6	94	86.990	ENSPKIG00000005578	chd6	79	72.497	Paramormyrops_kingsleyae
ENSMICG00000016641	CHD6	99	82.018	ENSPMGG00000014877	chd6	88	76.600	Periophthalmus_magnuspinnatus
ENSMICG00000016641	CHD6	100	97.619	ENSPEMG00000014672	-	100	97.619	Peromyscus_maniculatus_bairdii
ENSMICG00000016641	CHD6	99	91.376	ENSPCIG00000028037	CHD6	100	80.183	Phascolarctos_cinereus
ENSMICG00000016641	CHD6	99	81.136	ENSPLAG00000003128	chd6	71	72.983	Poecilia_latipinna
ENSMICG00000016641	CHD6	99	81.136	ENSPREG00000022653	chd6	99	86.264	Poecilia_reticulata
ENSMICG00000016641	CHD6	99	94.198	ENSPPYG00000011016	CHD6	99	94.198	Pongo_abelii
ENSMICG00000016641	CHD6	100	99.451	ENSPCOG00000001089	CHD6	100	99.451	Propithecus_coquereli
ENSMICG00000016641	CHD6	99	81.136	ENSPNYG00000022516	chd6	75	78.050	Pundamilia_nyererei
ENSMICG00000016641	CHD6	94	87.184	ENSPNAG00000012825	chd6	79	70.663	Pygocentrus_nattereri
ENSMICG00000016641	CHD6	99	91.376	ENSRNOG00000016744	Chd6	99	88.172	Rattus_norvegicus
ENSMICG00000016641	CHD6	100	99.084	ENSSBOG00000022089	CHD6	99	99.084	Saimiri_boliviensis_boliviensis
ENSMICG00000016641	CHD6	99	91.193	ENSSHAG00000017072	CHD6	100	80.425	Sarcophilus_harrisii
ENSMICG00000016641	CHD6	94	87.184	ENSSFOG00015012920	chd6	81	72.893	Scleropages_formosus
ENSMICG00000016641	CHD6	84	98.908	ENSSARG00000002615	-	61	100.000	Sorex_araneus
ENSMICG00000016641	CHD6	99	93.028	ENSSSCG00000007360	CHD6	100	91.061	Sus_scrofa
ENSMICG00000016641	CHD6	99	88.991	ENSTGUG00000003179	CHD6	99	73.744	Taeniopygia_guttata
ENSMICG00000016641	CHD6	99	80.220	ENSTNIG00000017487	chd6	83	75.711	Tetraodon_nigroviridis
ENSMICG00000016641	CHD6	99	90.642	ENSTTRG00000013438	CHD6	99	87.830	Tursiops_truncatus
ENSMICG00000016641	CHD6	100	97.436	ENSUAMG00000024036	CHD6	100	97.436	Ursus_americanus
ENSMICG00000016641	CHD6	100	97.436	ENSUMAG00000002017	CHD6	100	97.436	Ursus_maritimus
ENSMICG00000016641	CHD6	98	87.664	ENSVPAG00000007941	CHD6	95	88.987	Vicugna_pacos
ENSMICG00000016641	CHD6	99	92.661	ENSVVUG00000029164	CHD6	100	91.316	Vulpes_vulpes
ENSMICG00000016641	CHD6	99	63.853	ENSXETG00000021445	chd6	91	70.349	Xenopus_tropicalis