EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMICG00000017429 (Gene tree)
Gene ID: 105868323
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Plus strand
Length: 14408 bases
Position: chr17:29279526-29293933
Accession: 105868323
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000017305	zf-CCCH	PF00642.24	4.3e-20	1	2
ENSMICP00000017305	zf-CCCH	PF00642.24	4.3e-20	2	2
ENSMICP00000015876	zf-CCCH	PF00642.24	1.8e-15	1	2
ENSMICP00000015876	zf-CCCH	PF00642.24	1.8e-15	2	2
ENSMICP00000015876	zf-CCHC	PF00098.23	4.1e-06	1	1
ENSMICP00000017305	zf-CCHC	PF00098.23	5.5e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000017428	CPSF4-202	636	-	ENSMICP00000015876	211 (aa)	-	UPI00085B3172
ENSMICT00000047655	CPSF4-201	1783	XM_012759042	ENSMICP00000017305	269 (aa)	XP_012614496	UPI000643C3BE

Gene Model

Click here to download ENSMICG00000017429's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000017429's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMICG00000017429	CPSF4	61	67.683	ENSMICG00000007503	CPSF4L	94	67.683

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000017429	CPSF4	100	99.628	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSMICG00000017429	CPSF4	67	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSMICG00000017429	CPSF4	100	99.257	ENSAMEG00000006252	CPSF4	100	99.257	Ailuropoda_melanoleuca
ENSMICG00000017429	CPSF4	100	79.926	ENSACIG00000009248	cpsf4	100	77.695	Amphilophus_citrinellus
ENSMICG00000017429	CPSF4	100	84.815	ENSAOCG00000019616	cpsf4	100	84.815	Amphiprion_ocellaris
ENSMICG00000017429	CPSF4	100	84.815	ENSAPEG00000011679	cpsf4	100	84.815	Amphiprion_percula
ENSMICG00000017429	CPSF4	100	84.191	ENSATEG00000007010	cpsf4	100	83.883	Anabas_testudineus
ENSMICG00000017429	CPSF4	100	93.309	ENSACAG00000012941	CPSF4	89	93.309	Anolis_carolinensis
ENSMICG00000017429	CPSF4	100	99.628	ENSANAG00000021360	CPSF4	100	99.628	Aotus_nancymaae
ENSMICG00000017429	CPSF4	100	84.074	ENSACLG00000010374	cpsf4	100	84.074	Astatotilapia_calliptera
ENSMICG00000017429	CPSF4	100	85.782	ENSAMXG00000031647	cpsf4	100	85.978	Astyanax_mexicanus
ENSMICG00000017429	CPSF4	100	89.219	ENSBTAG00000002090	CPSF4	100	89.219	Bos_taurus
ENSMICG00000017429	CPSF4	100	99.628	ENSCJAG00000015826	CPSF4	100	99.628	Callithrix_jacchus
ENSMICG00000017429	CPSF4	100	98.885	ENSCAFG00000015036	CPSF4	100	98.885	Canis_familiaris
ENSMICG00000017429	CPSF4	100	92.565	ENSCAFG00020014462	CPSF4	100	92.565	Canis_lupus_dingo
ENSMICG00000017429	CPSF4	100	98.885	ENSCHIG00000014313	CPSF4	100	98.885	Capra_hircus
ENSMICG00000017429	CPSF4	100	88.263	ENSTSYG00000014604	-	100	88.263	Carlito_syrichta
ENSMICG00000017429	CPSF4	100	98.578	ENSTSYG00000005712	-	100	98.578	Carlito_syrichta
ENSMICG00000017429	CPSF4	85	89.503	ENSTSYG00000008195	-	100	89.503	Carlito_syrichta
ENSMICG00000017429	CPSF4	81	99.083	ENSCAPG00000013881	CPSF4	87	99.083	Cavia_aperea
ENSMICG00000017429	CPSF4	100	99.052	ENSCPOG00000001783	CPSF4	100	99.052	Cavia_porcellus
ENSMICG00000017429	CPSF4	100	99.628	ENSCCAG00000028291	CPSF4	100	99.628	Cebus_capucinus
ENSMICG00000017429	CPSF4	100	99.628	ENSCATG00000038440	CPSF4	100	99.628	Cercocebus_atys
ENSMICG00000017429	CPSF4	100	99.257	ENSCLAG00000007050	CPSF4	100	99.257	Chinchilla_lanigera
ENSMICG00000017429	CPSF4	100	99.628	ENSCSAG00000017795	CPSF4	100	99.628	Chlorocebus_sabaeus
ENSMICG00000017429	CPSF4	80	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSMICG00000017429	CPSF4	61	81.212	ENSCPBG00000010269	-	100	80.723	Chrysemys_picta_bellii
ENSMICG00000017429	CPSF4	97	55.939	ENSCING00000021080	-	97	55.939	Ciona_intestinalis
ENSMICG00000017429	CPSF4	96	54.417	ENSCSAVG00000011469	-	97	53.381	Ciona_savignyi
ENSMICG00000017429	CPSF4	100	99.628	ENSCANG00000019384	CPSF4	100	99.628	Colobus_angolensis_palliatus
ENSMICG00000017429	CPSF4	100	99.052	ENSCGRG00001024184	Cpsf4	100	99.052	Cricetulus_griseus_chok1gshd
ENSMICG00000017429	CPSF4	100	99.257	ENSCGRG00000013892	Cpsf4	100	99.257	Cricetulus_griseus_crigri
ENSMICG00000017429	CPSF4	100	84.360	ENSCSEG00000019055	cpsf4	100	84.360	Cynoglossus_semilaevis
ENSMICG00000017429	CPSF4	100	83.333	ENSCVAG00000016528	cpsf4	100	83.333	Cyprinodon_variegatus
ENSMICG00000017429	CPSF4	100	85.240	ENSDARG00000020217	cpsf4	100	85.240	Danio_rerio
ENSMICG00000017429	CPSF4	100	99.257	ENSDNOG00000006344	CPSF4	100	99.257	Dasypus_novemcinctus
ENSMICG00000017429	CPSF4	81	98.618	ENSDORG00000000742	Cpsf4	100	98.618	Dipodomys_ordii
ENSMICG00000017429	CPSF4	100	54.110	FBgn0015621	Clp	99	54.110	Drosophila_melanogaster
ENSMICG00000017429	CPSF4	73	100.000	ENSETEG00000002608	CPSF4	70	100.000	Echinops_telfairi
ENSMICG00000017429	CPSF4	99	65.169	ENSEBUG00000012552	cpsf4	98	65.169	Eptatretus_burgeri
ENSMICG00000017429	CPSF4	100	89.963	ENSEASG00005002487	CPSF4	100	89.963	Equus_asinus_asinus
ENSMICG00000017429	CPSF4	100	99.257	ENSECAG00000007525	CPSF4	100	99.257	Equus_caballus
ENSMICG00000017429	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSMICG00000017429	CPSF4	100	82.847	ENSELUG00000011481	cpsf4	100	82.847	Esox_lucius
ENSMICG00000017429	CPSF4	100	99.257	ENSFCAG00000015070	CPSF4	100	99.257	Felis_catus
ENSMICG00000017429	CPSF4	61	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSMICG00000017429	CPSF4	100	85.874	ENSFALG00000013799	CPSF4	100	84.387	Ficedula_albicollis
ENSMICG00000017429	CPSF4	90	98.354	ENSFDAG00000014092	CPSF4	100	98.354	Fukomys_damarensis
ENSMICG00000017429	CPSF4	100	82.963	ENSFHEG00000010880	cpsf4	100	82.963	Fundulus_heteroclitus
ENSMICG00000017429	CPSF4	100	77.491	ENSGMOG00000002330	cpsf4	100	76.015	Gadus_morhua
ENSMICG00000017429	CPSF4	100	85.874	ENSGALG00000004714	CPSF4	100	84.758	Gallus_gallus
ENSMICG00000017429	CPSF4	99	38.947	ENSGALG00000004441	-	98	32.174	Gallus_gallus
ENSMICG00000017429	CPSF4	100	82.222	ENSGAFG00000010580	cpsf4	100	82.222	Gambusia_affinis
ENSMICG00000017429	CPSF4	100	77.122	ENSGACG00000007792	cpsf4	100	76.384	Gasterosteus_aculeatus
ENSMICG00000017429	CPSF4	100	95.539	ENSGAGG00000021835	CPSF4	100	95.539	Gopherus_agassizii
ENSMICG00000017429	CPSF4	68	76.923	ENSGAGG00000020579	-	92	81.212	Gopherus_agassizii
ENSMICG00000017429	CPSF4	100	99.628	ENSGGOG00000015131	CPSF4	100	99.628	Gorilla_gorilla
ENSMICG00000017429	CPSF4	100	84.074	ENSHBUG00000013699	cpsf4	100	84.074	Haplochromis_burtoni
ENSMICG00000017429	CPSF4	100	98.578	ENSHGLG00000017150	CPSF4	100	98.578	Heterocephalus_glaber_female
ENSMICG00000017429	CPSF4	87	95.339	ENSHGLG00100009215	-	100	96.023	Heterocephalus_glaber_male
ENSMICG00000017429	CPSF4	100	70.616	ENSHGLG00100017302	-	100	68.720	Heterocephalus_glaber_male
ENSMICG00000017429	CPSF4	100	80.741	ENSHCOG00000004397	cpsf4	100	80.741	Hippocampus_comes
ENSMICG00000017429	CPSF4	100	84.133	ENSIPUG00000017147	cpsf4	100	85.294	Ictalurus_punctatus
ENSMICG00000017429	CPSF4	100	99.257	ENSSTOG00000001688	CPSF4	100	99.257	Ictidomys_tridecemlineatus
ENSMICG00000017429	CPSF4	100	99.257	ENSJJAG00000019426	Cpsf4	100	99.257	Jaculus_jaculus
ENSMICG00000017429	CPSF4	100	81.852	ENSKMAG00000015642	cpsf4	100	81.852	Kryptolebias_marmoratus
ENSMICG00000017429	CPSF4	100	88.889	ENSLACG00000010938	CPSF4	100	88.889	Latimeria_chalumnae
ENSMICG00000017429	CPSF4	100	61.111	ENSLACG00000018470	-	100	61.111	Latimeria_chalumnae
ENSMICG00000017429	CPSF4	100	89.219	ENSLOCG00000004814	cpsf4	100	89.219	Lepisosteus_oculatus
ENSMICG00000017429	CPSF4	100	98.885	ENSLAFG00000000159	CPSF4	100	98.885	Loxodonta_africana
ENSMICG00000017429	CPSF4	100	99.628	ENSMFAG00000001462	CPSF4	100	99.628	Macaca_fascicularis
ENSMICG00000017429	CPSF4	100	99.628	ENSMMUG00000019191	CPSF4	100	99.628	Macaca_mulatta
ENSMICG00000017429	CPSF4	100	99.628	ENSMNEG00000032306	CPSF4	100	99.628	Macaca_nemestrina
ENSMICG00000017429	CPSF4	100	99.628	ENSMLEG00000034721	CPSF4	100	99.628	Mandrillus_leucophaeus
ENSMICG00000017429	CPSF4	100	84.074	ENSMAMG00000006244	cpsf4	100	84.074	Mastacembelus_armatus
ENSMICG00000017429	CPSF4	100	84.074	ENSMZEG00005007515	cpsf4	100	84.074	Maylandia_zebra
ENSMICG00000017429	CPSF4	87	84.255	ENSMGAG00000004235	CPSF4	100	82.979	Meleagris_gallopavo
ENSMICG00000017429	CPSF4	100	99.257	ENSMAUG00000021253	Cpsf4	100	99.257	Mesocricetus_auratus
ENSMICG00000017429	CPSF4	100	99.257	ENSMOCG00000014901	Cpsf4	100	99.257	Microtus_ochrogaster
ENSMICG00000017429	CPSF4	100	84.834	ENSMMOG00000001813	cpsf4	100	84.834	Mola_mola
ENSMICG00000017429	CPSF4	100	97.398	ENSMODG00000001367	CPSF4	100	97.398	Monodelphis_domestica
ENSMICG00000017429	CPSF4	100	82.963	ENSMALG00000012611	cpsf4	100	82.963	Monopterus_albus
ENSMICG00000017429	CPSF4	100	99.257	MGP_CAROLIEiJ_G0028012	Cpsf4	100	99.257	Mus_caroli
ENSMICG00000017429	CPSF4	100	99.257	ENSMUSG00000029625	Cpsf4	100	99.257	Mus_musculus
ENSMICG00000017429	CPSF4	100	99.257	MGP_PahariEiJ_G0024581	Cpsf4	100	99.257	Mus_pahari
ENSMICG00000017429	CPSF4	100	99.628	MGP_SPRETEiJ_G0029013	Cpsf4	100	99.628	Mus_spretus
ENSMICG00000017429	CPSF4	100	99.257	ENSMPUG00000016508	CPSF4	100	99.257	Mustela_putorius_furo
ENSMICG00000017429	CPSF4	87	87.660	ENSMLUG00000010980	CPSF4	100	87.660	Myotis_lucifugus
ENSMICG00000017429	CPSF4	100	98.885	ENSNGAG00000001567	Cpsf4	100	98.885	Nannospalax_galili
ENSMICG00000017429	CPSF4	91	83.740	ENSNBRG00000003943	cpsf4	98	83.740	Neolamprologus_brichardi
ENSMICG00000017429	CPSF4	100	99.526	ENSNLEG00000011074	CPSF4	100	99.526	Nomascus_leucogenys
ENSMICG00000017429	CPSF4	100	97.398	ENSMEUG00000006955	CPSF4	100	97.398	Notamacropus_eugenii
ENSMICG00000017429	CPSF4	100	98.885	ENSOPRG00000013663	CPSF4	100	98.885	Ochotona_princeps
ENSMICG00000017429	CPSF4	100	74.359	ENSODEG00000009779	-	100	74.359	Octodon_degus
ENSMICG00000017429	CPSF4	98	78.774	ENSODEG00000018283	-	89	78.774	Octodon_degus
ENSMICG00000017429	CPSF4	100	99.257	ENSODEG00000011181	-	100	99.257	Octodon_degus
ENSMICG00000017429	CPSF4	100	84.074	ENSONIG00000008495	cpsf4	100	84.074	Oreochromis_niloticus
ENSMICG00000017429	CPSF4	100	53.957	ENSOANG00000009568	-	100	52.518	Ornithorhynchus_anatinus
ENSMICG00000017429	CPSF4	87	95.745	ENSOANG00000007729	CPSF4	100	95.745	Ornithorhynchus_anatinus
ENSMICG00000017429	CPSF4	100	98.885	ENSOCUG00000002437	CPSF4	70	98.885	Oryctolagus_cuniculus
ENSMICG00000017429	CPSF4	100	83.271	ENSORLG00000022798	cpsf4	100	83.271	Oryzias_latipes
ENSMICG00000017429	CPSF4	100	83.271	ENSORLG00020008548	cpsf4	100	83.271	Oryzias_latipes_hni
ENSMICG00000017429	CPSF4	100	82.900	ENSORLG00015019575	cpsf4	100	82.900	Oryzias_latipes_hsok
ENSMICG00000017429	CPSF4	100	83.886	ENSOMEG00000005176	cpsf4	100	83.886	Oryzias_melastigma
ENSMICG00000017429	CPSF4	100	99.628	ENSOGAG00000010884	CPSF4	100	99.628	Otolemur_garnettii
ENSMICG00000017429	CPSF4	100	87.912	ENSOARG00000018668	CPSF4	100	87.546	Ovis_aries
ENSMICG00000017429	CPSF4	100	99.257	ENSPPAG00000043355	CPSF4	100	99.257	Pan_paniscus
ENSMICG00000017429	CPSF4	100	99.257	ENSPPRG00000003134	CPSF4	100	99.257	Panthera_pardus
ENSMICG00000017429	CPSF4	90	99.174	ENSPTIG00000005604	CPSF4	90	99.174	Panthera_tigris_altaica
ENSMICG00000017429	CPSF4	100	99.257	ENSPTRG00000019453	CPSF4	100	99.257	Pan_troglodytes
ENSMICG00000017429	CPSF4	100	99.628	ENSPANG00000023123	CPSF4	100	99.628	Papio_anubis
ENSMICG00000017429	CPSF4	100	83.942	ENSPKIG00000014278	cpsf4	100	83.942	Paramormyrops_kingsleyae
ENSMICG00000017429	CPSF4	80	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSMICG00000017429	CPSF4	81	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSMICG00000017429	CPSF4	100	72.862	ENSPMGG00000017735	cpsf4	100	71.747	Periophthalmus_magnuspinnatus
ENSMICG00000017429	CPSF4	100	99.257	ENSPEMG00000004508	Cpsf4	100	99.257	Peromyscus_maniculatus_bairdii
ENSMICG00000017429	CPSF4	100	97.398	ENSPCIG00000024776	CPSF4	100	97.398	Phascolarctos_cinereus
ENSMICG00000017429	CPSF4	100	82.222	ENSPFOG00000014912	cpsf4	100	82.222	Poecilia_formosa
ENSMICG00000017429	CPSF4	100	75.093	ENSPLAG00000009599	cpsf4	100	75.093	Poecilia_latipinna
ENSMICG00000017429	CPSF4	100	82.222	ENSPMEG00000009790	cpsf4	100	82.222	Poecilia_mexicana
ENSMICG00000017429	CPSF4	100	81.481	ENSPREG00000018166	cpsf4	100	79.182	Poecilia_reticulata
ENSMICG00000017429	CPSF4	87	98.718	ENSPPYG00000017378	CPSF4	100	98.718	Pongo_abelii
ENSMICG00000017429	CPSF4	100	98.141	ENSPCAG00000001892	CPSF4	100	98.141	Procavia_capensis
ENSMICG00000017429	CPSF4	100	99.628	ENSPCOG00000012771	CPSF4	100	99.628	Propithecus_coquereli
ENSMICG00000017429	CPSF4	100	92.565	ENSPVAG00000007531	CPSF4	100	92.565	Pteropus_vampyrus
ENSMICG00000017429	CPSF4	100	84.074	ENSPNYG00000018559	cpsf4	100	84.074	Pundamilia_nyererei
ENSMICG00000017429	CPSF4	100	86.347	ENSPNAG00000003736	cpsf4	100	87.085	Pygocentrus_nattereri
ENSMICG00000017429	CPSF4	100	99.052	ENSRNOG00000000985	Cpsf4	100	99.052	Rattus_norvegicus
ENSMICG00000017429	CPSF4	87	99.573	ENSRBIG00000033886	CPSF4	100	99.573	Rhinopithecus_bieti
ENSMICG00000017429	CPSF4	100	99.526	ENSRROG00000040431	CPSF4	100	99.526	Rhinopithecus_roxellana
ENSMICG00000017429	CPSF4	100	99.628	ENSSBOG00000020493	CPSF4	100	99.628	Saimiri_boliviensis_boliviensis
ENSMICG00000017429	CPSF4	100	97.398	ENSSHAG00000011533	CPSF4	100	97.398	Sarcophilus_harrisii
ENSMICG00000017429	CPSF4	100	85.145	ENSSFOG00015007883	cpsf4	100	85.870	Scleropages_formosus
ENSMICG00000017429	CPSF4	100	79.182	ENSSMAG00000006374	cpsf4	100	77.695	Scophthalmus_maximus
ENSMICG00000017429	CPSF4	100	83.333	ENSSDUG00000018887	cpsf4	100	83.333	Seriola_dumerili
ENSMICG00000017429	CPSF4	100	83.088	ENSSLDG00000019078	cpsf4	100	83.088	Seriola_lalandi_dorsalis
ENSMICG00000017429	CPSF4	87	99.573	ENSSARG00000012416	CPSF4	100	99.573	Sorex_araneus
ENSMICG00000017429	CPSF4	96	59.615	ENSSPUG00000014803	-	97	59.690	Sphenodon_punctatus
ENSMICG00000017429	CPSF4	100	94.052	ENSSPUG00000003549	CPSF4	100	94.052	Sphenodon_punctatus
ENSMICG00000017429	CPSF4	100	79.554	ENSSPAG00000006174	cpsf4	100	77.323	Stegastes_partitus
ENSMICG00000017429	CPSF4	100	90.335	ENSSSCG00000026896	CPSF4	100	90.335	Sus_scrofa
ENSMICG00000017429	CPSF4	100	84.871	ENSTGUG00000007552	CPSF4	100	83.395	Taeniopygia_guttata
ENSMICG00000017429	CPSF4	100	80.952	ENSTRUG00000024220	cpsf4	100	80.952	Takifugu_rubripes
ENSMICG00000017429	CPSF4	100	80.000	ENSTNIG00000006265	cpsf4	100	81.481	Tetraodon_nigroviridis
ENSMICG00000017429	CPSF4	87	90.598	ENSTBEG00000011406	CPSF4	100	90.598	Tupaia_belangeri
ENSMICG00000017429	CPSF4	85	100.000	ENSTTRG00000003007	CPSF4	100	78.810	Tursiops_truncatus
ENSMICG00000017429	CPSF4	92	88.664	ENSUAMG00000008051	CPSF4	85	88.664	Ursus_americanus
ENSMICG00000017429	CPSF4	100	89.591	ENSUMAG00000009474	CPSF4	100	89.591	Ursus_maritimus
ENSMICG00000017429	CPSF4	100	89.591	ENSVVUG00000008824	CPSF4	100	89.591	Vulpes_vulpes
ENSMICG00000017429	CPSF4	100	88.172	ENSXETG00000009892	cpsf4	100	88.172	Xenopus_tropicalis
ENSMICG00000017429	CPSF4	99	61.194	ENSXETG00000004641	cpsf4l	99	61.194	Xenopus_tropicalis
ENSMICG00000017429	CPSF4	100	83.886	ENSXCOG00000016040	cpsf4	100	83.886	Xiphophorus_couchianus
ENSMICG00000017429	CPSF4	100	82.222	ENSXMAG00000024670	cpsf4	100	82.222	Xiphophorus_maculatus