EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMICG00000028619 (Gene tree)
Gene ID: 105873990
Gene Symbol: -
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Minus strand
Length: 5489 bases
Position: chr24:11290378-11295866
Accession: 105873990
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000030929	LSM	PF01423.22	5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000032948	-	490	XM_012769399	ENSMICP00000030929	103 (aa)	XP_012624853	UPI000012E96B

Gene Model

Click here to download ENSMICG00000028619's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000028619's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMICG00000028619	-	69	36.620	ENSMICG00000015369	-	88	38.235
ENSMICG00000028619	-	72	35.526	ENSMICG00000042730	LSM8	73	35.526
ENSMICG00000028619	-	100	99.029	ENSMICG00000009988	-	100	99.029
ENSMICG00000028619	-	68	38.571	ENSMICG00000005503	-	89	38.571

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000028619	-	100	100.000	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSMICG00000028619	-	91	95.745	ENSAPOG00000015573	lsm7	81	95.745	Acanthochromis_polyacanthus
ENSMICG00000028619	-	100	97.087	ENSAMEG00000005484	LSM7	100	97.087	Ailuropoda_melanoleuca
ENSMICG00000028619	-	95	94.898	ENSACIG00000006498	lsm7	78	94.898	Amphilophus_citrinellus
ENSMICG00000028619	-	98	95.050	ENSAOCG00000001077	lsm7	92	95.050	Amphiprion_ocellaris
ENSMICG00000028619	-	100	95.146	ENSAPEG00000000694	lsm7	100	95.146	Amphiprion_percula
ENSMICG00000028619	-	100	93.204	ENSAPEG00000024447	lsm7	92	95.050	Amphiprion_percula
ENSMICG00000028619	-	100	95.146	ENSATEG00000008557	lsm7	100	95.146	Anabas_testudineus
ENSMICG00000028619	-	100	91.262	ENSANAG00000022222	-	100	91.262	Aotus_nancymaae
ENSMICG00000028619	-	100	100.000	ENSANAG00000037196	-	100	100.000	Aotus_nancymaae
ENSMICG00000028619	-	100	94.175	ENSACLG00000021021	lsm7	100	94.175	Astatotilapia_calliptera
ENSMICG00000028619	-	100	95.146	ENSAMXG00000037622	lsm7	100	95.146	Astyanax_mexicanus
ENSMICG00000028619	-	100	100.000	ENSBTAG00000004521	LSM7	100	100.000	Bos_taurus
ENSMICG00000028619	-	97	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSMICG00000028619	-	54	100.000	ENSCJAG00000039713	-	68	100.000	Callithrix_jacchus
ENSMICG00000028619	-	98	99.010	ENSCAFG00000019409	LSM7	98	99.010	Canis_familiaris
ENSMICG00000028619	-	98	99.010	ENSCAFG00020018168	LSM7	74	99.010	Canis_lupus_dingo
ENSMICG00000028619	-	100	98.058	ENSCHIG00000023663	LSM7	100	98.058	Capra_hircus
ENSMICG00000028619	-	69	100.000	ENSCAPG00000014534	LSM7	100	100.000	Cavia_aperea
ENSMICG00000028619	-	100	100.000	ENSCPOG00000014025	LSM7	100	100.000	Cavia_porcellus
ENSMICG00000028619	-	98	100.000	ENSCCAG00000035456	LSM7	99	100.000	Cebus_capucinus
ENSMICG00000028619	-	100	100.000	ENSCATG00000023543	LSM7	100	100.000	Cercocebus_atys
ENSMICG00000028619	-	100	100.000	ENSCLAG00000011635	LSM7	100	100.000	Chinchilla_lanigera
ENSMICG00000028619	-	100	100.000	ENSCSAG00000011599	LSM7	100	100.000	Chlorocebus_sabaeus
ENSMICG00000028619	-	70	94.444	ENSCPBG00000021317	LSM7	77	94.444	Chrysemys_picta_bellii
ENSMICG00000028619	-	93	80.208	ENSCING00000022134	-	97	80.208	Ciona_intestinalis
ENSMICG00000028619	-	100	100.000	ENSCANG00000035525	LSM7	100	100.000	Colobus_angolensis_palliatus
ENSMICG00000028619	-	87	88.889	ENSCGRG00001016005	-	92	88.889	Cricetulus_griseus_chok1gshd
ENSMICG00000028619	-	100	99.029	ENSCGRG00001000807	-	100	99.029	Cricetulus_griseus_chok1gshd
ENSMICG00000028619	-	98	99.010	ENSCGRG00000014355	-	97	99.010	Cricetulus_griseus_crigri
ENSMICG00000028619	-	87	88.889	ENSCGRG00000006821	-	92	88.889	Cricetulus_griseus_crigri
ENSMICG00000028619	-	98	95.050	ENSCSEG00000014900	lsm7	86	95.050	Cynoglossus_semilaevis
ENSMICG00000028619	-	98	96.040	ENSCVAG00000021091	lsm7	94	96.040	Cyprinodon_variegatus
ENSMICG00000028619	-	100	95.146	ENSDARG00000058328	lsm7	100	95.146	Danio_rerio
ENSMICG00000028619	-	99	98.039	ENSDORG00000024460	Lsm7	100	98.039	Dipodomys_ordii
ENSMICG00000028619	-	94	76.531	FBgn0261068	LSm7	89	76.531	Drosophila_melanogaster
ENSMICG00000028619	-	98	97.030	ENSETEG00000012788	LSM7	99	97.030	Echinops_telfairi
ENSMICG00000028619	-	100	84.466	ENSEBUG00000016992	lsm7	99	84.466	Eptatretus_burgeri
ENSMICG00000028619	-	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSMICG00000028619	-	100	96.117	ENSECAG00000001440	LSM7	66	96.117	Equus_caballus
ENSMICG00000028619	-	100	99.029	ENSFCAG00000003445	LSM7	100	99.029	Felis_catus
ENSMICG00000028619	-	98	97.030	ENSFALG00000011912	LSM7	100	97.030	Ficedula_albicollis
ENSMICG00000028619	-	93	100.000	ENSFDAG00000007661	LSM7	100	100.000	Fukomys_damarensis
ENSMICG00000028619	-	98	96.040	ENSFHEG00000006349	lsm7	90	96.040	Fundulus_heteroclitus
ENSMICG00000028619	-	100	91.262	ENSGMOG00000013320	lsm7	100	91.262	Gadus_morhua
ENSMICG00000028619	-	100	96.117	ENSGAFG00000013902	lsm7	100	96.117	Gambusia_affinis
ENSMICG00000028619	-	100	92.233	ENSGACG00000010390	lsm7	100	92.233	Gasterosteus_aculeatus
ENSMICG00000028619	-	100	100.000	ENSGGOG00000010172	LSM7	100	100.000	Gorilla_gorilla
ENSMICG00000028619	-	100	94.175	ENSHBUG00000004616	lsm7	100	94.175	Haplochromis_burtoni
ENSMICG00000028619	-	100	100.000	ENSHGLG00000010587	LSM7	100	100.000	Heterocephalus_glaber_female
ENSMICG00000028619	-	100	100.000	ENSHGLG00100000852	LSM7	100	100.000	Heterocephalus_glaber_male
ENSMICG00000028619	-	98	94.059	ENSHCOG00000020252	lsm7	100	94.059	Hippocampus_comes
ENSMICG00000028619	-	100	95.146	ENSIPUG00000024724	lsm7	100	95.146	Ictalurus_punctatus
ENSMICG00000028619	-	98	100.000	ENSSTOG00000028372	LSM7	99	100.000	Ictidomys_tridecemlineatus
ENSMICG00000028619	-	98	98.020	ENSJJAG00000001936	Lsm7	98	98.020	Jaculus_jaculus
ENSMICG00000028619	-	100	96.117	ENSKMAG00000022151	lsm7	100	96.117	Kryptolebias_marmoratus
ENSMICG00000028619	-	100	94.175	ENSLBEG00000005203	lsm7	100	94.175	Labrus_bergylta
ENSMICG00000028619	-	100	97.087	ENSLACG00000015700	LSM7	100	97.087	Latimeria_chalumnae
ENSMICG00000028619	-	100	96.117	ENSLOCG00000004356	lsm7	100	96.117	Lepisosteus_oculatus
ENSMICG00000028619	-	98	100.000	ENSLAFG00000029302	LSM7	98	100.000	Loxodonta_africana
ENSMICG00000028619	-	100	100.000	ENSMFAG00000044572	LSM7	100	100.000	Macaca_fascicularis
ENSMICG00000028619	-	100	100.000	ENSMMUG00000000452	LSM7	100	100.000	Macaca_mulatta
ENSMICG00000028619	-	100	100.000	ENSMNEG00000004393	LSM7	100	100.000	Macaca_nemestrina
ENSMICG00000028619	-	100	100.000	ENSMLEG00000030852	LSM7	100	100.000	Mandrillus_leucophaeus
ENSMICG00000028619	-	100	94.175	ENSMAMG00000005410	lsm7	100	94.175	Mastacembelus_armatus
ENSMICG00000028619	-	100	94.175	ENSMZEG00005028055	lsm7	100	94.175	Maylandia_zebra
ENSMICG00000028619	-	100	98.058	ENSMGAG00000000750	LSM7	89	98.058	Meleagris_gallopavo
ENSMICG00000028619	-	100	99.029	ENSMAUG00000009276	Lsm7	100	99.029	Mesocricetus_auratus
ENSMICG00000028619	-	100	99.029	ENSMOCG00000016925	Lsm7	100	99.029	Microtus_ochrogaster
ENSMICG00000028619	-	100	95.146	ENSMMOG00000019645	lsm7	98	95.146	Mola_mola
ENSMICG00000028619	-	100	99.029	ENSMODG00000004722	LSM7	100	99.029	Monodelphis_domestica
ENSMICG00000028619	-	100	94.175	ENSMALG00000014511	lsm7	79	94.175	Monopterus_albus
ENSMICG00000028619	-	100	97.087	MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	Mus_caroli
ENSMICG00000028619	-	100	97.087	ENSMUSG00000035215	Lsm7	100	97.087	Mus_musculus
ENSMICG00000028619	-	100	97.087	MGP_PahariEiJ_G0031020	Lsm7	100	97.087	Mus_pahari
ENSMICG00000028619	-	100	97.087	MGP_SPRETEiJ_G0016425	Lsm7	100	97.087	Mus_spretus
ENSMICG00000028619	-	100	92.233	ENSMLUG00000024002	-	94	92.233	Myotis_lucifugus
ENSMICG00000028619	-	100	97.087	ENSMLUG00000013097	-	100	97.087	Myotis_lucifugus
ENSMICG00000028619	-	100	98.058	ENSNGAG00000021637	Lsm7	100	98.058	Nannospalax_galili
ENSMICG00000028619	-	91	94.681	ENSNBRG00000001237	-	82	92.233	Neolamprologus_brichardi
ENSMICG00000028619	-	98	94.059	ENSNBRG00000015770	lsm7	87	94.059	Neolamprologus_brichardi
ENSMICG00000028619	-	100	100.000	ENSNLEG00000002265	LSM7	100	100.000	Nomascus_leucogenys
ENSMICG00000028619	-	100	93.204	ENSODEG00000018769	-	100	93.204	Octodon_degus
ENSMICG00000028619	-	100	79.612	ENSODEG00000008190	-	100	79.612	Octodon_degus
ENSMICG00000028619	-	100	100.000	ENSODEG00000013590	-	100	100.000	Octodon_degus
ENSMICG00000028619	-	100	94.175	ENSONIG00000001801	lsm7	89	94.175	Oreochromis_niloticus
ENSMICG00000028619	-	100	95.146	ENSORLG00000023951	lsm7	100	95.146	Oryzias_latipes
ENSMICG00000028619	-	100	95.146	ENSORLG00020022226	lsm7	100	95.146	Oryzias_latipes_hni
ENSMICG00000028619	-	100	93.204	ENSORLG00015020044	lsm7	94	95.050	Oryzias_latipes_hsok
ENSMICG00000028619	-	100	95.146	ENSOMEG00000012806	lsm7	100	95.146	Oryzias_melastigma
ENSMICG00000028619	-	98	98.020	ENSOGAG00000000144	-	99	98.020	Otolemur_garnettii
ENSMICG00000028619	-	100	88.350	ENSOGAG00000024373	-	100	88.350	Otolemur_garnettii
ENSMICG00000028619	-	100	98.058	ENSOARG00000014013	LSM7	100	98.058	Ovis_aries
ENSMICG00000028619	-	100	100.000	ENSPPAG00000026500	LSM7	100	100.000	Pan_paniscus
ENSMICG00000028619	-	100	99.029	ENSPPRG00000008624	LSM7	100	99.029	Panthera_pardus
ENSMICG00000028619	-	98	99.010	ENSPTIG00000016252	LSM7	98	99.010	Panthera_tigris_altaica
ENSMICG00000028619	-	100	100.000	ENSPTRG00000010233	LSM7	100	100.000	Pan_troglodytes
ENSMICG00000028619	-	100	100.000	ENSPANG00000020668	LSM7	100	100.000	Papio_anubis
ENSMICG00000028619	-	100	97.087	ENSPKIG00000011325	lsm7	100	97.087	Paramormyrops_kingsleyae
ENSMICG00000028619	-	98	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSMICG00000028619	-	100	95.146	ENSPMGG00000006498	lsm7	100	95.146	Periophthalmus_magnuspinnatus
ENSMICG00000028619	-	100	99.029	ENSPCIG00000030454	LSM7	100	99.029	Phascolarctos_cinereus
ENSMICG00000028619	-	100	93.204	ENSPFOG00000012467	lsm7	91	93.204	Poecilia_formosa
ENSMICG00000028619	-	100	93.204	ENSPLAG00000000252	lsm7	94	94.118	Poecilia_latipinna
ENSMICG00000028619	-	100	93.204	ENSPMEG00000000587	lsm7	94	94.118	Poecilia_mexicana
ENSMICG00000028619	-	78	76.543	ENSPREG00000016718	lsm7	65	76.543	Poecilia_reticulata
ENSMICG00000028619	-	71	97.260	ENSPPYG00000009348	-	50	97.260	Pongo_abelii
ENSMICG00000028619	-	100	100.000	ENSPCOG00000017177	LSM7	100	100.000	Propithecus_coquereli
ENSMICG00000028619	-	100	94.175	ENSPNYG00000006938	lsm7	100	94.175	Pundamilia_nyererei
ENSMICG00000028619	-	100	95.146	ENSPNAG00000010141	lsm7	100	95.146	Pygocentrus_nattereri
ENSMICG00000028619	-	100	98.058	ENSRNOG00000019552	Lsm7	100	98.058	Rattus_norvegicus
ENSMICG00000028619	-	100	100.000	ENSRBIG00000035978	LSM7	100	100.000	Rhinopithecus_bieti
ENSMICG00000028619	-	100	100.000	ENSRROG00000034044	LSM7	100	100.000	Rhinopithecus_roxellana
ENSMICG00000028619	-	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSMICG00000028619	-	100	100.000	ENSSBOG00000034899	LSM7	100	100.000	Saimiri_boliviensis_boliviensis
ENSMICG00000028619	-	100	95.146	ENSSFOG00015006728	lsm7	100	95.146	Scleropages_formosus
ENSMICG00000028619	-	100	93.204	ENSSMAG00000004195	lsm7	93	95.050	Scophthalmus_maximus
ENSMICG00000028619	-	100	95.146	ENSSDUG00000001863	lsm7	100	95.146	Seriola_dumerili
ENSMICG00000028619	-	100	95.146	ENSSLDG00000016339	lsm7	100	95.146	Seriola_lalandi_dorsalis
ENSMICG00000028619	-	100	95.146	ENSSPAG00000015221	lsm7	100	95.146	Stegastes_partitus
ENSMICG00000028619	-	98	100.000	ENSSSCG00000013463	LSM7	99	100.000	Sus_scrofa
ENSMICG00000028619	-	98	97.030	ENSTGUG00000000067	LSM7	100	97.030	Taeniopygia_guttata
ENSMICG00000028619	-	100	95.146	ENSTRUG00000022913	lsm7	100	95.146	Takifugu_rubripes
ENSMICG00000028619	-	100	95.146	ENSTNIG00000015525	lsm7	100	95.146	Tetraodon_nigroviridis
ENSMICG00000028619	-	68	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSMICG00000028619	-	100	97.087	ENSUAMG00000000912	LSM7	86	97.087	Ursus_americanus
ENSMICG00000028619	-	98	99.010	ENSUMAG00000006556	LSM7	79	99.010	Ursus_maritimus
ENSMICG00000028619	-	69	98.592	ENSVVUG00000002640	LSM7	65	98.592	Vulpes_vulpes
ENSMICG00000028619	-	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSMICG00000028619	-	99	95.098	ENSXCOG00000002572	lsm7	100	95.098	Xiphophorus_couchianus
ENSMICG00000028619	-	100	96.117	ENSXMAG00000018630	lsm7	100	96.117	Xiphophorus_maculatus