EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMICG00000043645 (Gene tree)
Gene ID: 105878291
Gene Symbol: APOBEC1
Alias: APOBEC-1|BEDP|CDAR1|HEPR
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Minus strand
Length: 10115 bases
Position: chr7:102531445-102541559
Accession: 105878291
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000046258	APOBEC_N	PF08210.11	1.7e-27	1	1
ENSMICP00000050270	APOBEC_N	PF08210.11	1.7e-27	1	1
ENSMICP00000046258	APOBEC_C	PF05240.14	4.7e-23	1	1
ENSMICP00000050270	APOBEC_C	PF05240.14	5.2e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000065887	APOBEC1-202	777	XM_012777627	ENSMICP00000050270	236 (aa)	XP_012633081	UPI000643746C
ENSMICT00000065526	APOBEC1-201	903	-	ENSMICP00000046258	230 (aa)	-	UPI000C2EB711

Gene Model

Click here to download ENSMICG00000043645's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000043645's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMICG00000043645	APOBEC1	65	32.500	ENSMICG00000042615	-	76	32.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000043645	APOBEC1	100	83.051	ENSG00000111701	APOBEC1	100	83.051	Homo_sapiens
ENSMICG00000043645	APOBEC1	97	80.717	ENSAMEG00000007098	APOBEC1	98	79.654	Ailuropoda_melanoleuca
ENSMICG00000043645	APOBEC1	74	40.571	ENSACAG00000028578	-	93	40.571	Anolis_carolinensis
ENSMICG00000043645	APOBEC1	100	79.237	ENSANAG00000027743	APOBEC1	95	79.237	Aotus_nancymaae
ENSMICG00000043645	APOBEC1	100	71.610	ENSBTAG00000014683	APOBEC1	100	71.610	Bos_taurus
ENSMICG00000043645	APOBEC1	96	80.090	ENSCJAG00000005398	APOBEC1	100	80.090	Callithrix_jacchus
ENSMICG00000043645	APOBEC1	100	78.390	ENSCAFG00000013901	APOBEC1	100	78.390	Canis_familiaris
ENSMICG00000043645	APOBEC1	96	79.186	ENSCAFG00020003511	APOBEC1	95	77.876	Canis_lupus_dingo
ENSMICG00000043645	APOBEC1	98	72.294	ENSCHIG00000011898	APOBEC1	96	72.294	Capra_hircus
ENSMICG00000043645	APOBEC1	60	82.979	ENSTSYG00000029141	APOBEC1	100	82.979	Carlito_syrichta
ENSMICG00000043645	APOBEC1	93	71.163	ENSCAPG00000015882	-	100	71.163	Cavia_aperea
ENSMICG00000043645	APOBEC1	99	68.936	ENSCPOG00000033068	APOBEC1	99	68.936	Cavia_porcellus
ENSMICG00000043645	APOBEC1	100	80.932	ENSCCAG00000022258	APOBEC1	100	80.932	Cebus_capucinus
ENSMICG00000043645	APOBEC1	100	84.746	ENSCATG00000021613	APOBEC1	95	84.746	Cercocebus_atys
ENSMICG00000043645	APOBEC1	97	72.609	ENSCLAG00000014645	APOBEC1	100	72.609	Chinchilla_lanigera
ENSMICG00000043645	APOBEC1	83	82.632	ENSCSAG00000009817	APOBEC1	99	82.632	Chlorocebus_sabaeus
ENSMICG00000043645	APOBEC1	77	44.385	ENSCPBG00000017398	-	82	44.385	Chrysemys_picta_bellii
ENSMICG00000043645	APOBEC1	94	38.222	ENSCPBG00000014331	-	90	38.222	Chrysemys_picta_bellii
ENSMICG00000043645	APOBEC1	83	45.312	ENSCPBG00000014327	-	81	38.863	Chrysemys_picta_bellii
ENSMICG00000043645	APOBEC1	83	45.641	ENSCPBG00000014328	-	85	45.641	Chrysemys_picta_bellii
ENSMICG00000043645	APOBEC1	84	47.692	ENSCPBG00000014329	-	53	47.692	Chrysemys_picta_bellii
ENSMICG00000043645	APOBEC1	78	42.781	ENSCPBG00000014335	-	76	42.781	Chrysemys_picta_bellii
ENSMICG00000043645	APOBEC1	97	83.784	ENSCANG00000038359	APOBEC1	100	83.478	Colobus_angolensis_palliatus
ENSMICG00000043645	APOBEC1	97	69.432	ENSCGRG00001011130	Apobec1	100	69.432	Cricetulus_griseus_chok1gshd
ENSMICG00000043645	APOBEC1	97	69.432	ENSCGRG00000008644	Apobec1	100	69.432	Cricetulus_griseus_crigri
ENSMICG00000043645	APOBEC1	100	76.695	ENSDNOG00000010926	APOBEC1	100	76.695	Dasypus_novemcinctus
ENSMICG00000043645	APOBEC1	93	67.290	ENSDORG00000023717	Apobec1	100	67.290	Dipodomys_ordii
ENSMICG00000043645	APOBEC1	99	76.170	ENSETEG00000004867	APOBEC1	99	76.170	Echinops_telfairi
ENSMICG00000043645	APOBEC1	97	83.333	ENSEASG00005015951	APOBEC1	97	82.251	Equus_asinus_asinus
ENSMICG00000043645	APOBEC1	83	81.579	ENSECAG00000017163	APOBEC1	99	81.579	Equus_caballus
ENSMICG00000043645	APOBEC1	89	55.882	ENSEEUG00000007530	-	97	55.882	Erinaceus_europaeus
ENSMICG00000043645	APOBEC1	96	66.216	ENSEEUG00000009112	-	99	66.216	Erinaceus_europaeus
ENSMICG00000043645	APOBEC1	100	82.203	ENSFCAG00000009350	APOBEC1	100	82.203	Felis_catus
ENSMICG00000043645	APOBEC1	61	50.350	ENSFALG00000007257	-	71	50.345	Ficedula_albicollis
ENSMICG00000043645	APOBEC1	90	62.802	ENSFDAG00000018470	APOBEC1	99	62.802	Fukomys_damarensis
ENSMICG00000043645	APOBEC1	92	44.749	ENSGAGG00000011837	-	90	46.825	Gopherus_agassizii
ENSMICG00000043645	APOBEC1	76	45.198	ENSGAGG00000004947	-	85	50.365	Gopherus_agassizii
ENSMICG00000043645	APOBEC1	74	45.614	ENSGAGG00000006624	-	63	45.143	Gopherus_agassizii
ENSMICG00000043645	APOBEC1	83	44.041	ENSGAGG00000021744	-	76	43.590	Gopherus_agassizii
ENSMICG00000043645	APOBEC1	74	41.379	ENSGAGG00000021745	-	64	41.379	Gopherus_agassizii
ENSMICG00000043645	APOBEC1	99	68.511	ENSHGLG00000001495	APOBEC1	99	68.511	Heterocephalus_glaber_female
ENSMICG00000043645	APOBEC1	99	67.234	ENSHGLG00100002187	APOBEC1	99	67.234	Heterocephalus_glaber_male
ENSMICG00000043645	APOBEC1	93	64.651	ENSSTOG00000021971	APOBEC1	100	77.551	Ictidomys_tridecemlineatus
ENSMICG00000043645	APOBEC1	97	72.489	ENSJJAG00000022108	Apobec1	100	72.489	Jaculus_jaculus
ENSMICG00000043645	APOBEC1	97	77.928	ENSLAFG00000030837	APOBEC1	100	77.130	Loxodonta_africana
ENSMICG00000043645	APOBEC1	100	84.322	ENSMFAG00000000277	APOBEC1	100	84.322	Macaca_fascicularis
ENSMICG00000043645	APOBEC1	100	83.898	ENSMNEG00000029670	APOBEC1	100	83.898	Macaca_nemestrina
ENSMICG00000043645	APOBEC1	100	84.746	ENSMLEG00000036301	APOBEC1	100	84.746	Mandrillus_leucophaeus
ENSMICG00000043645	APOBEC1	96	70.136	ENSMAUG00000022167	Apobec1	99	70.136	Mesocricetus_auratus
ENSMICG00000043645	APOBEC1	100	66.102	ENSMODG00000018004	APOBEC1	100	66.102	Monodelphis_domestica
ENSMICG00000043645	APOBEC1	97	70.614	ENSMUSG00000040613	Apobec1	99	70.614	Mus_musculus
ENSMICG00000043645	APOBEC1	97	69.737	MGP_PahariEiJ_G0022580	-	99	69.737	Mus_pahari
ENSMICG00000043645	APOBEC1	97	70.614	MGP_SPRETEiJ_G0029857	Apobec1	99	70.614	Mus_spretus
ENSMICG00000043645	APOBEC1	100	78.390	ENSMPUG00000017532	APOBEC1	100	78.390	Mustela_putorius_furo
ENSMICG00000043645	APOBEC1	97	70.306	ENSNGAG00000022607	Apobec1	100	70.306	Nannospalax_galili
ENSMICG00000043645	APOBEC1	100	83.898	ENSNLEG00000005342	APOBEC1	100	83.898	Nomascus_leucogenys
ENSMICG00000043645	APOBEC1	100	65.254	ENSMEUG00000013406	APOBEC1	100	65.254	Notamacropus_eugenii
ENSMICG00000043645	APOBEC1	77	62.431	ENSOPRG00000009508	-	100	62.431	Ochotona_princeps
ENSMICG00000043645	APOBEC1	100	75.000	ENSOCUG00000025736	APOBEC1	88	75.000	Oryctolagus_cuniculus
ENSMICG00000043645	APOBEC1	98	86.580	ENSOGAG00000026415	APOBEC1	98	86.580	Otolemur_garnettii
ENSMICG00000043645	APOBEC1	100	71.610	ENSOARG00000002072	APOBEC1	99	71.610	Ovis_aries
ENSMICG00000043645	APOBEC1	98	77.056	ENSPPAG00000027657	APOBEC1	98	77.056	Pan_paniscus
ENSMICG00000043645	APOBEC1	100	82.627	ENSPPRG00000012182	APOBEC1	100	82.627	Panthera_pardus
ENSMICG00000043645	APOBEC1	100	82.627	ENSPTIG00000020280	APOBEC1	100	82.627	Panthera_tigris_altaica
ENSMICG00000043645	APOBEC1	100	83.051	ENSPTRG00000004614	APOBEC1	100	83.051	Pan_troglodytes
ENSMICG00000043645	APOBEC1	100	84.322	ENSPANG00000021027	APOBEC1	100	84.322	Papio_anubis
ENSMICG00000043645	APOBEC1	55	48.182	ENSPSIG00000012791	-	72	48.182	Pelodiscus_sinensis
ENSMICG00000043645	APOBEC1	99	38.136	ENSPSIG00000012568	-	99	38.136	Pelodiscus_sinensis
ENSMICG00000043645	APOBEC1	97	68.122	ENSPEMG00000023841	Apobec1	100	68.122	Peromyscus_maniculatus_bairdii
ENSMICG00000043645	APOBEC1	100	67.797	ENSPCIG00000023973	APOBEC1	100	67.797	Phascolarctos_cinereus
ENSMICG00000043645	APOBEC1	100	82.203	ENSPPYG00000004228	APOBEC1	95	82.203	Pongo_abelii
ENSMICG00000043645	APOBEC1	79	77.005	ENSPCAG00000008733	APOBEC1	100	77.005	Procavia_capensis
ENSMICG00000043645	APOBEC1	97	92.342	ENSPCOG00000013957	APOBEC1	98	92.793	Propithecus_coquereli
ENSMICG00000043645	APOBEC1	100	63.559	ENSPVAG00000010709	APOBEC1	100	63.559	Pteropus_vampyrus
ENSMICG00000043645	APOBEC1	97	68.421	ENSRNOG00000015411	Apobec1	99	68.421	Rattus_norvegicus
ENSMICG00000043645	APOBEC1	100	83.898	ENSRBIG00000031161	APOBEC1	100	83.898	Rhinopithecus_bieti
ENSMICG00000043645	APOBEC1	100	83.898	ENSRROG00000033576	APOBEC1	100	83.898	Rhinopithecus_roxellana
ENSMICG00000043645	APOBEC1	75	78.613	ENSSBOG00000030587	APOBEC1	98	78.613	Saimiri_boliviensis_boliviensis
ENSMICG00000043645	APOBEC1	97	68.018	ENSSHAG00000008925	APOBEC1	99	67.841	Sarcophilus_harrisii
ENSMICG00000043645	APOBEC1	57	71.756	ENSSARG00000011972	-	99	71.756	Sorex_araneus
ENSMICG00000043645	APOBEC1	75	67.442	ENSSARG00000000032	-	100	67.442	Sorex_araneus
ENSMICG00000043645	APOBEC1	88	41.463	ENSSPUG00000009044	-	79	42.381	Sphenodon_punctatus
ENSMICG00000043645	APOBEC1	100	75.424	ENSSSCG00000000668	APOBEC1	100	75.424	Sus_scrofa
ENSMICG00000043645	APOBEC1	62	50.694	ENSTGUG00000013118	-	99	51.389	Taeniopygia_guttata
ENSMICG00000043645	APOBEC1	96	72.851	ENSTBEG00000010043	APOBEC1	94	72.851	Tupaia_belangeri
ENSMICG00000043645	APOBEC1	79	72.193	ENSTTRG00000014015	APOBEC1	100	72.193	Tursiops_truncatus
ENSMICG00000043645	APOBEC1	97	81.166	ENSUAMG00000011636	APOBEC1	95	80.087	Ursus_americanus
ENSMICG00000043645	APOBEC1	97	81.166	ENSUMAG00000016552	APOBEC1	95	80.087	Ursus_maritimus
ENSMICG00000043645	APOBEC1	100	73.729	ENSVPAG00000001343	APOBEC1	100	73.729	Vicugna_pacos
ENSMICG00000043645	APOBEC1	100	79.237	ENSVVUG00000010522	APOBEC1	100	79.237	Vulpes_vulpes