EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMICG00000048948 (Gene tree)
Gene ID: 105870057
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Microcebus_murinus
Status: putative
Strand: Plus strand
Length: 132038 bases
Position: chr1:49142648-49274685
Accession: 105870057
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMICP00000051200	XRN_N	PF03159.18	4.6e-96	1	1
ENSMICP00000050763	XRN_N	PF03159.18	4.6e-96	1	1
ENSMICP00000051452	XRN_N	PF03159.18	2.7e-43	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMICT00000072926	XRN1-202	5133	XM_012762365	ENSMICP00000050763	1710 (aa)	XP_012617819	-
ENSMICT00000073504	XRN1-203	324	-	ENSMICP00000051452	107 (aa)	-	UPI0001B79642
ENSMICT00000072458	XRN1-201	8917	XM_020285944	ENSMICP00000051200	1698 (aa)	XP_020141533	UPI00098A8D3D

Gene Model

Click here to download ENSMICG00000048948's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMICG00000048948's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMICG00000048948	XRN1	98	50.000	ENSMICG00000008126	XRN2	63	43.617

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMICG00000048948	XRN1	100	100.000	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSMICG00000048948	XRN1	96	96.117	ENSAPOG00000000622	xrn1	100	70.448	Acanthochromis_polyacanthus
ENSMICG00000048948	XRN1	96	100.000	ENSAMEG00000012538	XRN1	100	91.777	Ailuropoda_melanoleuca
ENSMICG00000048948	XRN1	97	94.231	ENSACIG00000001057	xrn1	99	72.846	Amphilophus_citrinellus
ENSMICG00000048948	XRN1	96	96.117	ENSAOCG00000014097	xrn1	95	69.076	Amphiprion_ocellaris
ENSMICG00000048948	XRN1	96	96.117	ENSAPEG00000006620	xrn1	91	72.552	Amphiprion_percula
ENSMICG00000048948	XRN1	96	95.146	ENSATEG00000009752	xrn1	97	71.019	Anabas_testudineus
ENSMICG00000048948	XRN1	99	76.000	ENSAPLG00000004905	XRN1	100	75.970	Anas_platyrhynchos
ENSMICG00000048948	XRN1	96	97.087	ENSACAG00000004985	XRN1	100	72.569	Anolis_carolinensis
ENSMICG00000048948	XRN1	96	100.000	ENSANAG00000029013	XRN1	99	95.852	Aotus_nancymaae
ENSMICG00000048948	XRN1	96	95.146	ENSACLG00000004806	xrn1	99	60.625	Astatotilapia_calliptera
ENSMICG00000048948	XRN1	100	91.667	ENSAMXG00000019370	xrn1	100	91.667	Astyanax_mexicanus
ENSMICG00000048948	XRN1	96	100.000	ENSBTAG00000011524	XRN1	100	92.168	Bos_taurus
ENSMICG00000048948	XRN1	95	80.392	WBGene00012730	xrn-1	83	38.688	Caenorhabditis_elegans
ENSMICG00000048948	XRN1	96	100.000	ENSCJAG00000001872	XRN1	100	93.875	Callithrix_jacchus
ENSMICG00000048948	XRN1	96	100.000	ENSCAFG00000007783	XRN1	100	92.982	Canis_familiaris
ENSMICG00000048948	XRN1	96	100.000	ENSCAFG00020009120	XRN1	99	94.286	Canis_lupus_dingo
ENSMICG00000048948	XRN1	96	100.000	ENSCHIG00000019192	XRN1	99	90.364	Capra_hircus
ENSMICG00000048948	XRN1	96	100.000	ENSTSYG00000002705	XRN1	100	93.875	Carlito_syrichta
ENSMICG00000048948	XRN1	73	100.000	ENSCAPG00000004604	-	99	77.114	Cavia_aperea
ENSMICG00000048948	XRN1	96	100.000	ENSCPOG00000035199	-	100	100.000	Cavia_porcellus
ENSMICG00000048948	XRN1	96	100.000	ENSCCAG00000034800	XRN1	99	96.989	Cebus_capucinus
ENSMICG00000048948	XRN1	96	100.000	ENSCATG00000041794	XRN1	100	94.464	Cercocebus_atys
ENSMICG00000048948	XRN1	96	100.000	ENSCLAG00000001451	XRN1	99	95.721	Chinchilla_lanigera
ENSMICG00000048948	XRN1	96	100.000	ENSCSAG00000011265	XRN1	100	94.506	Chlorocebus_sabaeus
ENSMICG00000048948	XRN1	72	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSMICG00000048948	XRN1	96	85.437	ENSCING00000001334	-	95	70.924	Ciona_intestinalis
ENSMICG00000048948	XRN1	96	86.408	ENSCSAVG00000008584	-	98	45.106	Ciona_savignyi
ENSMICG00000048948	XRN1	96	100.000	ENSCANG00000037495	XRN1	99	96.989	Colobus_angolensis_palliatus
ENSMICG00000048948	XRN1	96	100.000	ENSCGRG00001019411	Xrn1	99	95.563	Cricetulus_griseus_chok1gshd
ENSMICG00000048948	XRN1	96	100.000	ENSCGRG00000012464	Xrn1	99	95.563	Cricetulus_griseus_crigri
ENSMICG00000048948	XRN1	96	96.117	ENSCSEG00000021285	xrn1	99	92.727	Cynoglossus_semilaevis
ENSMICG00000048948	XRN1	96	95.146	ENSCVAG00000013089	xrn1	99	72.575	Cyprinodon_variegatus
ENSMICG00000048948	XRN1	96	96.117	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSMICG00000048948	XRN1	96	98.058	ENSDNOG00000034202	-	100	98.058	Dasypus_novemcinctus
ENSMICG00000048948	XRN1	96	94.175	ENSDORG00000013833	Xrn1	100	86.771	Dipodomys_ordii
ENSMICG00000048948	XRN1	98	67.619	FBgn0020261	pcm	76	40.108	Drosophila_melanogaster
ENSMICG00000048948	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSMICG00000048948	XRN1	96	100.000	ENSEASG00005002687	XRN1	100	95.510	Equus_asinus_asinus
ENSMICG00000048948	XRN1	96	100.000	ENSECAG00000008301	XRN1	100	92.694	Equus_caballus
ENSMICG00000048948	XRN1	96	100.000	ENSEEUG00000011323	XRN1	92	82.796	Erinaceus_europaeus
ENSMICG00000048948	XRN1	96	96.117	ENSELUG00000000169	xrn1	100	61.180	Esox_lucius
ENSMICG00000048948	XRN1	96	100.000	ENSFCAG00000027589	XRN1	99	96.484	Felis_catus
ENSMICG00000048948	XRN1	96	95.146	ENSFALG00000007021	XRN1	100	74.692	Ficedula_albicollis
ENSMICG00000048948	XRN1	96	100.000	ENSFDAG00000020494	XRN1	99	95.246	Fukomys_damarensis
ENSMICG00000048948	XRN1	96	95.146	ENSFHEG00000017255	-	100	95.146	Fundulus_heteroclitus
ENSMICG00000048948	XRN1	96	94.175	ENSGMOG00000006396	xrn1	83	67.923	Gadus_morhua
ENSMICG00000048948	XRN1	96	96.117	ENSGALG00000002706	XRN1	100	75.225	Gallus_gallus
ENSMICG00000048948	XRN1	96	94.175	ENSGAFG00000006293	-	100	94.175	Gambusia_affinis
ENSMICG00000048948	XRN1	96	96.117	ENSGACG00000014328	xrn1	100	60.102	Gasterosteus_aculeatus
ENSMICG00000048948	XRN1	96	96.117	ENSGAGG00000017535	XRN1	99	78.059	Gopherus_agassizii
ENSMICG00000048948	XRN1	96	100.000	ENSGGOG00000008047	XRN1	100	94.229	Gorilla_gorilla
ENSMICG00000048948	XRN1	97	95.192	ENSHBUG00000005908	xrn1	98	72.990	Haplochromis_burtoni
ENSMICG00000048948	XRN1	96	100.000	ENSHGLG00000014476	XRN1	99	96.038	Heterocephalus_glaber_female
ENSMICG00000048948	XRN1	96	100.000	ENSHGLG00100015130	XRN1	99	96.038	Heterocephalus_glaber_male
ENSMICG00000048948	XRN1	96	96.117	ENSHCOG00000013992	-	90	96.117	Hippocampus_comes
ENSMICG00000048948	XRN1	96	96.117	ENSHCOG00000014062	xrn1	98	70.332	Hippocampus_comes
ENSMICG00000048948	XRN1	96	95.146	ENSIPUG00000015229	xrn1	97	63.912	Ictalurus_punctatus
ENSMICG00000048948	XRN1	96	100.000	ENSSTOG00000013552	XRN1	99	96.830	Ictidomys_tridecemlineatus
ENSMICG00000048948	XRN1	98	86.550	ENSJJAG00000010863	Xrn1	99	94.311	Jaculus_jaculus
ENSMICG00000048948	XRN1	96	94.175	ENSKMAG00000021356	xrn1	94	76.632	Kryptolebias_marmoratus
ENSMICG00000048948	XRN1	98	95.238	ENSLBEG00000018656	xrn1	99	95.238	Labrus_bergylta
ENSMICG00000048948	XRN1	96	98.058	ENSLACG00000009020	XRN1	100	69.165	Latimeria_chalumnae
ENSMICG00000048948	XRN1	96	96.117	ENSLOCG00000007944	xrn1	99	64.888	Lepisosteus_oculatus
ENSMICG00000048948	XRN1	96	100.000	ENSLAFG00000015426	XRN1	100	96.071	Loxodonta_africana
ENSMICG00000048948	XRN1	96	100.000	ENSMFAG00000032599	XRN1	100	94.582	Macaca_fascicularis
ENSMICG00000048948	XRN1	96	100.000	ENSMMUG00000014038	XRN1	100	94.523	Macaca_mulatta
ENSMICG00000048948	XRN1	96	100.000	ENSMNEG00000034217	XRN1	100	94.405	Macaca_nemestrina
ENSMICG00000048948	XRN1	96	100.000	ENSMLEG00000041349	-	99	96.696	Mandrillus_leucophaeus
ENSMICG00000048948	XRN1	96	95.146	ENSMAMG00000013219	xrn1	94	76.907	Mastacembelus_armatus
ENSMICG00000048948	XRN1	96	95.146	ENSMZEG00005015099	xrn1	99	60.568	Maylandia_zebra
ENSMICG00000048948	XRN1	99	75.334	ENSMGAG00000006333	XRN1	100	75.246	Meleagris_gallopavo
ENSMICG00000048948	XRN1	99	97.170	ENSMAUG00000014268	-	100	97.170	Mesocricetus_auratus
ENSMICG00000048948	XRN1	96	100.000	ENSMOCG00000008665	Xrn1	99	94.295	Microtus_ochrogaster
ENSMICG00000048948	XRN1	96	100.000	ENSMODG00000021236	XRN1	100	82.343	Monodelphis_domestica
ENSMICG00000048948	XRN1	96	95.146	ENSMALG00000004098	xrn1	100	57.389	Monopterus_albus
ENSMICG00000048948	XRN1	96	100.000	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSMICG00000048948	XRN1	96	100.000	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSMICG00000048948	XRN1	96	100.000	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSMICG00000048948	XRN1	96	100.000	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSMICG00000048948	XRN1	96	100.000	ENSMPUG00000012040	XRN1	100	93.337	Mustela_putorius_furo
ENSMICG00000048948	XRN1	96	100.000	ENSMLUG00000016885	XRN1	100	88.594	Myotis_lucifugus
ENSMICG00000048948	XRN1	96	99.029	ENSNGAG00000023964	Xrn1	99	91.442	Nannospalax_galili
ENSMICG00000048948	XRN1	97	95.192	ENSNBRG00000001531	-	100	95.192	Neolamprologus_brichardi
ENSMICG00000048948	XRN1	96	100.000	ENSNLEG00000004726	XRN1	100	94.287	Nomascus_leucogenys
ENSMICG00000048948	XRN1	96	99.029	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSMICG00000048948	XRN1	96	99.029	ENSOPRG00000007337	-	78	84.480	Ochotona_princeps
ENSMICG00000048948	XRN1	96	100.000	ENSODEG00000008804	-	100	100.000	Octodon_degus
ENSMICG00000048948	XRN1	96	95.146	ENSONIG00000016673	xrn1	99	64.881	Oreochromis_niloticus
ENSMICG00000048948	XRN1	92	77.680	ENSOANG00000006735	XRN1	100	77.617	Ornithorhynchus_anatinus
ENSMICG00000048948	XRN1	96	99.029	ENSOCUG00000001861	XRN1	100	90.561	Oryctolagus_cuniculus
ENSMICG00000048948	XRN1	96	96.117	ENSORLG00000013005	xrn1	100	60.182	Oryzias_latipes
ENSMICG00000048948	XRN1	96	96.117	ENSORLG00020005559	xrn1	100	61.756	Oryzias_latipes_hni
ENSMICG00000048948	XRN1	96	96.117	ENSORLG00015022523	xrn1	100	61.250	Oryzias_latipes_hsok
ENSMICG00000048948	XRN1	96	96.117	ENSOMEG00000015397	xrn1	99	73.024	Oryzias_melastigma
ENSMICG00000048948	XRN1	96	100.000	ENSOGAG00000000170	XRN1	100	92.924	Otolemur_garnettii
ENSMICG00000048948	XRN1	96	100.000	ENSOARG00000006343	XRN1	99	92.744	Ovis_aries
ENSMICG00000048948	XRN1	96	99.029	ENSPPAG00000010180	XRN1	100	94.111	Pan_paniscus
ENSMICG00000048948	XRN1	96	100.000	ENSPPRG00000007125	XRN1	100	93.526	Panthera_pardus
ENSMICG00000048948	XRN1	96	100.000	ENSPTIG00000021081	XRN1	100	93.526	Panthera_tigris_altaica
ENSMICG00000048948	XRN1	96	99.029	ENSPTRG00000015482	XRN1	100	94.229	Pan_troglodytes
ENSMICG00000048948	XRN1	96	100.000	ENSPANG00000010638	XRN1	100	94.405	Papio_anubis
ENSMICG00000048948	XRN1	96	96.117	ENSPKIG00000011903	-	79	96.117	Paramormyrops_kingsleyae
ENSMICG00000048948	XRN1	96	96.117	ENSPSIG00000018050	XRN1	100	77.024	Pelodiscus_sinensis
ENSMICG00000048948	XRN1	96	96.117	ENSPMGG00000002648	xrn1	98	78.336	Periophthalmus_magnuspinnatus
ENSMICG00000048948	XRN1	96	100.000	ENSPEMG00000020610	Xrn1	99	95.404	Peromyscus_maniculatus_bairdii
ENSMICG00000048948	XRN1	74	88.608	ENSPMAG00000002975	xrn1	91	78.161	Petromyzon_marinus
ENSMICG00000048948	XRN1	98	97.143	ENSPCIG00000028735	XRN1	99	90.283	Phascolarctos_cinereus
ENSMICG00000048948	XRN1	96	95.146	ENSPFOG00000013932	xrn1	99	64.943	Poecilia_formosa
ENSMICG00000048948	XRN1	96	95.146	ENSPLAG00000021653	xrn1	99	64.512	Poecilia_latipinna
ENSMICG00000048948	XRN1	96	95.146	ENSPMEG00000003076	xrn1	95	64.874	Poecilia_mexicana
ENSMICG00000048948	XRN1	96	95.146	ENSPREG00000021147	xrn1	100	61.202	Poecilia_reticulata
ENSMICG00000048948	XRN1	96	100.000	ENSPPYG00000014172	XRN1	100	94.152	Pongo_abelii
ENSMICG00000048948	XRN1	73	100.000	ENSPCAG00000005638	XRN1	99	82.597	Procavia_capensis
ENSMICG00000048948	XRN1	100	97.661	ENSPCOG00000013089	XRN1	100	97.661	Propithecus_coquereli
ENSMICG00000048948	XRN1	96	100.000	ENSPVAG00000016265	XRN1	96	91.854	Pteropus_vampyrus
ENSMICG00000048948	XRN1	96	95.146	ENSPNYG00000010570	xrn1	99	60.887	Pundamilia_nyererei
ENSMICG00000048948	XRN1	96	94.175	ENSPNAG00000023531	xrn1	99	60.103	Pygocentrus_nattereri
ENSMICG00000048948	XRN1	96	100.000	ENSRNOG00000042951	Xrn1	100	86.916	Rattus_norvegicus
ENSMICG00000048948	XRN1	96	100.000	ENSRBIG00000041227	XRN1	100	93.805	Rhinopithecus_bieti
ENSMICG00000048948	XRN1	96	100.000	ENSRROG00000033764	-	100	100.000	Rhinopithecus_roxellana
ENSMICG00000048948	XRN1	100	59.813	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSMICG00000048948	XRN1	96	100.000	ENSSBOG00000029561	XRN1	100	93.801	Saimiri_boliviensis_boliviensis
ENSMICG00000048948	XRN1	99	81.877	ENSSHAG00000016207	XRN1	100	81.582	Sarcophilus_harrisii
ENSMICG00000048948	XRN1	96	95.146	ENSSFOG00015024211	xrn1	98	62.434	Scleropages_formosus
ENSMICG00000048948	XRN1	96	96.117	ENSSMAG00000016534	xrn1	95	72.375	Scophthalmus_maximus
ENSMICG00000048948	XRN1	96	96.117	ENSSDUG00000010306	xrn1	97	72.476	Seriola_dumerili
ENSMICG00000048948	XRN1	96	96.117	ENSSLDG00000021543	xrn1	100	70.794	Seriola_lalandi_dorsalis
ENSMICG00000048948	XRN1	73	92.308	ENSSARG00000007741	-	83	85.021	Sorex_araneus
ENSMICG00000048948	XRN1	96	96.117	ENSSPUG00000010754	-	100	96.117	Sphenodon_punctatus
ENSMICG00000048948	XRN1	96	94.175	ENSTGUG00000008498	XRN1	100	76.852	Taeniopygia_guttata
ENSMICG00000048948	XRN1	96	93.204	ENSTRUG00000004895	xrn1	96	77.035	Takifugu_rubripes
ENSMICG00000048948	XRN1	95	94.118	ENSTNIG00000017615	xrn1	98	59.123	Tetraodon_nigroviridis
ENSMICG00000048948	XRN1	96	100.000	ENSTBEG00000003256	XRN1	84	96.765	Tupaia_belangeri
ENSMICG00000048948	XRN1	100	89.006	ENSTTRG00000012914	XRN1	100	88.772	Tursiops_truncatus
ENSMICG00000048948	XRN1	96	100.000	ENSUAMG00000001608	XRN1	99	94.286	Ursus_americanus
ENSMICG00000048948	XRN1	96	100.000	ENSUMAG00000013625	XRN1	100	94.393	Ursus_maritimus
ENSMICG00000048948	XRN1	96	100.000	ENSVPAG00000004690	XRN1	100	90.526	Vicugna_pacos
ENSMICG00000048948	XRN1	96	100.000	ENSVVUG00000024461	XRN1	99	97.147	Vulpes_vulpes
ENSMICG00000048948	XRN1	96	97.087	ENSXETG00000000619	xrn1	97	89.247	Xenopus_tropicalis
ENSMICG00000048948	XRN1	96	95.146	ENSXCOG00000007917	xrn1	95	62.781	Xiphophorus_couchianus
ENSMICG00000048948	XRN1	96	95.146	ENSXMAG00000018320	xrn1	93	72.290	Xiphophorus_maculatus