EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMLEG00000028404 (Gene tree)
Gene ID: 105547111
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Mandrillus_leucophaeus
Status: putative
Strand: Plus strand
Length: 22815 bases
Position: chrKN973096.1:3157731-3180545
Accession: 105547111
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMLEP00000008475	UPF1_Zn_bind	PF09416.10	8.3e-75	1	1
ENSMLEP00000008475	ResIII	PF04851.15	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMLET00000031862	UPF1-201	3159	XM_011990544	ENSMLEP00000008475	1052 (aa)	XP_011845934	A0A2K5XYX5
ENSMLET00000031874	UPF1-202	4789	-	ENSMLEP00000008487	373 (aa)	-	A0A2K5XYT8

Gene Model

Click here to download ENSMLEG00000028404's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMLEG00000028404's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMLEG00000028404	UPF1	100	100.000	ENSG00000005007	UPF1	93	100.000	Homo_sapiens
ENSMLEG00000028404	UPF1	99	93.827	ENSAPOG00000010916	-	95	93.922	Acanthochromis_polyacanthus
ENSMLEG00000028404	UPF1	99	92.330	ENSAPOG00000023773	upf1	95	92.519	Acanthochromis_polyacanthus
ENSMLEG00000028404	UPF1	99	99.810	ENSAMEG00000011474	UPF1	93	99.810	Ailuropoda_melanoleuca
ENSMLEG00000028404	UPF1	98	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSMLEG00000028404	UPF1	99	92.053	ENSACIG00000019949	upf1	95	92.519	Amphilophus_citrinellus
ENSMLEG00000028404	UPF1	99	91.817	ENSAOCG00000018519	upf1	95	92.502	Amphiprion_ocellaris
ENSMLEG00000028404	UPF1	99	93.827	ENSAOCG00000006352	-	100	91.426	Amphiprion_ocellaris
ENSMLEG00000028404	UPF1	99	93.827	ENSAPEG00000006292	-	100	91.426	Amphiprion_percula
ENSMLEG00000028404	UPF1	99	91.817	ENSAPEG00000016344	upf1	95	92.502	Amphiprion_percula
ENSMLEG00000028404	UPF1	99	90.926	ENSATEG00000017867	upf1	95	91.862	Anabas_testudineus
ENSMLEG00000028404	UPF1	99	93.827	ENSATEG00000016606	-	95	93.922	Anabas_testudineus
ENSMLEG00000028404	UPF1	99	98.192	ENSAPLG00000009175	UPF1	99	98.192	Anas_platyrhynchos
ENSMLEG00000028404	UPF1	100	98.669	ENSANAG00000024107	UPF1	95	98.669	Aotus_nancymaae
ENSMLEG00000028404	UPF1	99	91.864	ENSACLG00000007181	upf1	95	92.330	Astatotilapia_calliptera
ENSMLEG00000028404	UPF1	99	93.726	ENSACLG00000022630	-	95	93.726	Astatotilapia_calliptera
ENSMLEG00000028404	UPF1	99	94.207	ENSAMXG00000042187	upf1	95	94.777	Astyanax_mexicanus
ENSMLEG00000028404	UPF1	99	99.810	ENSBTAG00000020922	UPF1	93	99.810	Bos_taurus
ENSMLEG00000028404	UPF1	85	53.611	WBGene00004880	smg-2	94	50.145	Caenorhabditis_elegans
ENSMLEG00000028404	UPF1	100	100.000	ENSCJAG00000019627	UPF1	93	100.000	Callithrix_jacchus
ENSMLEG00000028404	UPF1	99	99.810	ENSCAFG00000014578	UPF1	93	99.810	Canis_familiaris
ENSMLEG00000028404	UPF1	99	98.763	ENSCAFG00020012347	UPF1	93	98.763	Canis_lupus_dingo
ENSMLEG00000028404	UPF1	99	99.810	ENSCHIG00000011018	UPF1	93	99.810	Capra_hircus
ENSMLEG00000028404	UPF1	100	99.620	ENSTSYG00000008877	UPF1	98	99.620	Carlito_syrichta
ENSMLEG00000028404	UPF1	100	98.764	ENSCAPG00000005758	UPF1	95	98.764	Cavia_aperea
ENSMLEG00000028404	UPF1	99	98.760	ENSCPOG00000025463	UPF1	94	98.760	Cavia_porcellus
ENSMLEG00000028404	UPF1	100	100.000	ENSCCAG00000032175	UPF1	94	100.000	Cebus_capucinus
ENSMLEG00000028404	UPF1	99	100.000	ENSCATG00000040306	UPF1	98	100.000	Cercocebus_atys
ENSMLEG00000028404	UPF1	100	99.620	ENSCLAG00000004037	UPF1	100	99.620	Chinchilla_lanigera
ENSMLEG00000028404	UPF1	100	98.954	ENSCSAG00000005276	UPF1	93	98.954	Chlorocebus_sabaeus
ENSMLEG00000028404	UPF1	99	97.438	ENSCPBG00000012513	UPF1	94	97.438	Chrysemys_picta_bellii
ENSMLEG00000028404	UPF1	74	82.497	ENSCING00000021399	-	91	82.497	Ciona_intestinalis
ENSMLEG00000028404	UPF1	99	73.415	ENSCSAVG00000006533	-	94	73.415	Ciona_savignyi
ENSMLEG00000028404	UPF1	100	100.000	ENSCANG00000029819	UPF1	97	100.000	Colobus_angolensis_palliatus
ENSMLEG00000028404	UPF1	100	98.004	ENSCGRG00001021067	Upf1	94	98.004	Cricetulus_griseus_chok1gshd
ENSMLEG00000028404	UPF1	100	99.049	ENSCGRG00000013480	Upf1	98	99.049	Cricetulus_griseus_crigri
ENSMLEG00000028404	UPF1	99	87.085	ENSCSEG00000017239	upf1	94	87.417	Cynoglossus_semilaevis
ENSMLEG00000028404	UPF1	99	93.821	ENSCSEG00000016159	-	95	93.821	Cynoglossus_semilaevis
ENSMLEG00000028404	UPF1	99	93.637	ENSCVAG00000010561	upf1	95	93.637	Cyprinodon_variegatus
ENSMLEG00000028404	UPF1	99	94.017	ENSDARG00000016302	upf1	95	94.587	Danio_rerio
ENSMLEG00000028404	UPF1	100	96.771	ENSDORG00000009984	Upf1	95	96.771	Dipodomys_ordii
ENSMLEG00000028404	UPF1	84	73.631	FBgn0030354	Upf1	80	69.650	Drosophila_melanogaster
ENSMLEG00000028404	UPF1	52	88.727	ENSEBUG00000010069	upf1	89	88.727	Eptatretus_burgeri
ENSMLEG00000028404	UPF1	99	98.668	ENSEASG00005006549	UPF1	93	98.668	Equus_asinus_asinus
ENSMLEG00000028404	UPF1	99	98.668	ENSECAG00000010639	UPF1	93	98.668	Equus_caballus
ENSMLEG00000028404	UPF1	99	93.012	ENSELUG00000012916	-	95	93.019	Esox_lucius
ENSMLEG00000028404	UPF1	99	91.493	ENSELUG00000020917	upf1	95	91.777	Esox_lucius
ENSMLEG00000028404	UPF1	99	99.715	ENSFCAG00000009757	UPF1	93	99.715	Felis_catus
ENSMLEG00000028404	UPF1	99	97.346	ENSFALG00000009312	UPF1	96	97.346	Ficedula_albicollis
ENSMLEG00000028404	UPF1	100	99.525	ENSFDAG00000014816	UPF1	100	99.525	Fukomys_damarensis
ENSMLEG00000028404	UPF1	91	93.648	ENSFHEG00000016276	-	96	93.829	Fundulus_heteroclitus
ENSMLEG00000028404	UPF1	99	89.454	ENSFHEG00000006428	upf1	94	89.454	Fundulus_heteroclitus
ENSMLEG00000028404	UPF1	99	93.447	ENSGMOG00000007541	upf1	95	94.017	Gadus_morhua
ENSMLEG00000028404	UPF1	99	97.907	ENSGALG00000003220	UPF1	93	97.907	Gallus_gallus
ENSMLEG00000028404	UPF1	67	93.901	ENSGAFG00000015443	-	88	91.621	Gambusia_affinis
ENSMLEG00000028404	UPF1	99	93.536	ENSGAFG00000004831	upf1	95	93.536	Gambusia_affinis
ENSMLEG00000028404	UPF1	99	97.812	ENSGAGG00000022217	UPF1	94	97.812	Gopherus_agassizii
ENSMLEG00000028404	UPF1	100	98.954	ENSGGOG00000002608	UPF1	99	98.954	Gorilla_gorilla
ENSMLEG00000028404	UPF1	86	86.207	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSMLEG00000028404	UPF1	86	100.000	ENSHBUG00000008939	upf1	89	100.000	Haplochromis_burtoni
ENSMLEG00000028404	UPF1	100	99.335	ENSHGLG00000010900	UPF1	93	99.335	Heterocephalus_glaber_female
ENSMLEG00000028404	UPF1	100	97.624	ENSHGLG00100005904	UPF1	97	97.624	Heterocephalus_glaber_male
ENSMLEG00000028404	UPF1	99	92.681	ENSHCOG00000008918	upf1	100	92.823	Hippocampus_comes
ENSMLEG00000028404	UPF1	99	94.682	ENSIPUG00000005108	UPF1	95	95.157	Ictalurus_punctatus
ENSMLEG00000028404	UPF1	100	99.620	ENSSTOG00000009196	UPF1	94	99.620	Ictidomys_tridecemlineatus
ENSMLEG00000028404	UPF1	100	98.859	ENSJJAG00000023151	Upf1	94	98.859	Jaculus_jaculus
ENSMLEG00000028404	UPF1	99	93.922	ENSKMAG00000004962	upf1	95	93.922	Kryptolebias_marmoratus
ENSMLEG00000028404	UPF1	99	93.637	ENSLBEG00000027848	-	95	93.732	Labrus_bergylta
ENSMLEG00000028404	UPF1	99	90.534	ENSLBEG00000014862	upf1	95	91.846	Labrus_bergylta
ENSMLEG00000028404	UPF1	66	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSMLEG00000028404	UPF1	99	96.293	ENSLOCG00000002072	upf1	95	96.293	Lepisosteus_oculatus
ENSMLEG00000028404	UPF1	99	99.239	ENSLAFG00000014963	UPF1	93	99.239	Loxodonta_africana
ENSMLEG00000028404	UPF1	100	100.000	ENSMFAG00000037748	UPF1	94	100.000	Macaca_fascicularis
ENSMLEG00000028404	UPF1	100	100.000	ENSMMUG00000023286	UPF1	94	100.000	Macaca_mulatta
ENSMLEG00000028404	UPF1	100	100.000	ENSMNEG00000000046	UPF1	94	100.000	Macaca_nemestrina
ENSMLEG00000028404	UPF1	99	90.739	ENSMAMG00000006229	upf1	95	91.862	Mastacembelus_armatus
ENSMLEG00000028404	UPF1	99	93.067	ENSMAMG00000006231	-	95	93.637	Mastacembelus_armatus
ENSMLEG00000028404	UPF1	99	90.748	ENSMZEG00005003489	upf1	95	92.105	Maylandia_zebra
ENSMLEG00000028404	UPF1	99	93.726	ENSMZEG00005016386	-	95	93.726	Maylandia_zebra
ENSMLEG00000028404	UPF1	99	97.719	ENSMGAG00000004745	UPF1	100	97.719	Meleagris_gallopavo
ENSMLEG00000028404	UPF1	100	99.049	ENSMAUG00000011398	Upf1	95	99.049	Mesocricetus_auratus
ENSMLEG00000028404	UPF1	100	98.669	ENSMICG00000001659	UPF1	93	98.669	Microcebus_murinus
ENSMLEG00000028404	UPF1	100	99.049	ENSMOCG00000005699	Upf1	94	99.049	Microtus_ochrogaster
ENSMLEG00000028404	UPF1	99	91.985	ENSMMOG00000007881	upf1	94	92.564	Mola_mola
ENSMLEG00000028404	UPF1	99	91.548	ENSMMOG00000007537	-	99	91.643	Mola_mola
ENSMLEG00000028404	UPF1	99	99.049	ENSMODG00000003689	UPF1	95	98.002	Monodelphis_domestica
ENSMLEG00000028404	UPF1	99	92.533	ENSMALG00000018100	-	95	92.628	Monopterus_albus
ENSMLEG00000028404	UPF1	99	91.817	ENSMALG00000000144	upf1	95	92.198	Monopterus_albus
ENSMLEG00000028404	UPF1	100	98.954	MGP_CAROLIEiJ_G0031142	Upf1	94	98.954	Mus_caroli
ENSMLEG00000028404	UPF1	100	98.954	ENSMUSG00000058301	Upf1	94	98.954	Mus_musculus
ENSMLEG00000028404	UPF1	100	98.954	MGP_PahariEiJ_G0021607	Upf1	94	98.954	Mus_pahari
ENSMLEG00000028404	UPF1	100	98.954	MGP_SPRETEiJ_G0032260	Upf1	94	98.954	Mus_spretus
ENSMLEG00000028404	UPF1	99	98.763	ENSMPUG00000015516	UPF1	93	98.763	Mustela_putorius_furo
ENSMLEG00000028404	UPF1	99	98.573	ENSMLUG00000012122	UPF1	93	98.573	Myotis_lucifugus
ENSMLEG00000028404	UPF1	100	98.954	ENSNGAG00000024107	Upf1	93	98.954	Nannospalax_galili
ENSMLEG00000028404	UPF1	99	92.885	ENSNBRG00000022069	-	100	92.885	Neolamprologus_brichardi
ENSMLEG00000028404	UPF1	99	90.066	ENSNBRG00000000670	upf1	95	90.530	Neolamprologus_brichardi
ENSMLEG00000028404	UPF1	100	94.202	ENSNLEG00000006062	UPF1	100	94.202	Nomascus_leucogenys
ENSMLEG00000028404	UPF1	82	94.314	ENSMEUG00000014146	-	76	94.314	Notamacropus_eugenii
ENSMLEG00000028404	UPF1	100	90.589	ENSOPRG00000014018	UPF1	100	90.589	Ochotona_princeps
ENSMLEG00000028404	UPF1	100	99.525	ENSODEG00000012426	UPF1	95	99.525	Octodon_degus
ENSMLEG00000028404	UPF1	99	91.028	ENSONIG00000010452	upf1	95	92.387	Oreochromis_niloticus
ENSMLEG00000028404	UPF1	99	93.821	ENSONIG00000012729	-	95	93.821	Oreochromis_niloticus
ENSMLEG00000028404	UPF1	99	98.575	ENSOANG00000004568	UPF1	93	98.575	Ornithorhynchus_anatinus
ENSMLEG00000028404	UPF1	99	93.542	ENSORLG00000008453	upf1	95	93.542	Oryzias_latipes
ENSMLEG00000028404	UPF1	99	93.542	ENSORLG00020014758	upf1	95	93.542	Oryzias_latipes_hni
ENSMLEG00000028404	UPF1	99	93.542	ENSORLG00015010165	upf1	100	89.692	Oryzias_latipes_hsok
ENSMLEG00000028404	UPF1	99	93.637	ENSOMEG00000003665	upf1	95	93.637	Oryzias_melastigma
ENSMLEG00000028404	UPF1	100	98.859	ENSOGAG00000012866	UPF1	93	98.859	Otolemur_garnettii
ENSMLEG00000028404	UPF1	96	99.408	ENSOARG00000010739	UPF1	93	99.408	Ovis_aries
ENSMLEG00000028404	UPF1	100	100.000	ENSPPAG00000043884	UPF1	96	100.000	Pan_paniscus
ENSMLEG00000028404	UPF1	99	99.715	ENSPPRG00000023470	UPF1	93	99.715	Panthera_pardus
ENSMLEG00000028404	UPF1	99	96.575	ENSPTIG00000010159	UPF1	99	96.575	Panthera_tigris_altaica
ENSMLEG00000028404	UPF1	100	100.000	ENSPTRG00000010721	UPF1	94	100.000	Pan_troglodytes
ENSMLEG00000028404	UPF1	100	100.000	ENSPANG00000008847	UPF1	94	100.000	Papio_anubis
ENSMLEG00000028404	UPF1	94	93.529	ENSPKIG00000006069	upf1	94	93.529	Paramormyrops_kingsleyae
ENSMLEG00000028404	UPF1	73	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSMLEG00000028404	UPF1	99	90.427	ENSPMGG00000017327	upf1	95	90.634	Periophthalmus_magnuspinnatus
ENSMLEG00000028404	UPF1	100	99.049	ENSPEMG00000001085	Upf1	94	99.049	Peromyscus_maniculatus_bairdii
ENSMLEG00000028404	UPF1	99	89.068	ENSPMAG00000001206	upf1	94	89.068	Petromyzon_marinus
ENSMLEG00000028404	UPF1	99	98.002	ENSPCIG00000006156	UPF1	93	98.002	Phascolarctos_cinereus
ENSMLEG00000028404	UPF1	99	90.584	ENSPLAG00000018155	-	95	90.584	Poecilia_latipinna
ENSMLEG00000028404	UPF1	99	93.631	ENSPLAG00000016232	-	95	93.631	Poecilia_latipinna
ENSMLEG00000028404	UPF1	99	93.726	ENSPMEG00000016319	-	95	93.726	Poecilia_mexicana
ENSMLEG00000028404	UPF1	99	91.176	ENSPMEG00000011443	-	95	91.176	Poecilia_mexicana
ENSMLEG00000028404	UPF1	99	91.149	ENSPREG00000009940	upf1	94	91.149	Poecilia_reticulata
ENSMLEG00000028404	UPF1	99	93.441	ENSPREG00000011247	-	95	93.441	Poecilia_reticulata
ENSMLEG00000028404	UPF1	100	94.677	ENSPPYG00000009752	UPF1	93	94.677	Pongo_abelii
ENSMLEG00000028404	UPF1	70	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSMLEG00000028404	UPF1	100	99.715	ENSPCOG00000023813	UPF1	94	99.715	Propithecus_coquereli
ENSMLEG00000028404	UPF1	66	100.000	ENSPVAG00000003183	UPF1	61	100.000	Pteropus_vampyrus
ENSMLEG00000028404	UPF1	99	93.726	ENSPNYG00000016731	-	95	93.726	Pundamilia_nyererei
ENSMLEG00000028404	UPF1	99	90.748	ENSPNYG00000003694	upf1	95	92.105	Pundamilia_nyererei
ENSMLEG00000028404	UPF1	99	94.207	ENSPNAG00000025614	upf1	95	94.777	Pygocentrus_nattereri
ENSMLEG00000028404	UPF1	100	98.954	ENSRNOG00000020134	Upf1	94	98.954	Rattus_norvegicus
ENSMLEG00000028404	UPF1	100	97.624	ENSRBIG00000013894	UPF1	98	98.593	Rhinopithecus_bieti
ENSMLEG00000028404	UPF1	100	100.000	ENSRROG00000040935	UPF1	97	100.000	Rhinopithecus_roxellana
ENSMLEG00000028404	UPF1	78	56.348	YMR080C	NAM7	84	56.348	Saccharomyces_cerevisiae
ENSMLEG00000028404	UPF1	99	99.905	ENSSBOG00000023632	UPF1	96	99.905	Saimiri_boliviensis_boliviensis
ENSMLEG00000028404	UPF1	99	98.860	ENSSHAG00000010499	UPF1	100	98.860	Sarcophilus_harrisii
ENSMLEG00000028404	UPF1	99	96.293	ENSSFOG00015021095	upf1	99	96.198	Scleropages_formosus
ENSMLEG00000028404	UPF1	99	90.159	ENSSMAG00000005055	upf1	95	91.105	Scophthalmus_maximus
ENSMLEG00000028404	UPF1	99	93.827	ENSSMAG00000021018	-	95	93.922	Scophthalmus_maximus
ENSMLEG00000028404	UPF1	99	90.926	ENSSDUG00000013320	upf1	95	92.049	Seriola_dumerili
ENSMLEG00000028404	UPF1	99	94.017	ENSSDUG00000009629	-	95	94.112	Seriola_dumerili
ENSMLEG00000028404	UPF1	99	91.785	ENSSLDG00000020868	upf1	95	92.366	Seriola_lalandi_dorsalis
ENSMLEG00000028404	UPF1	99	94.017	ENSSLDG00000006878	-	95	94.112	Seriola_lalandi_dorsalis
ENSMLEG00000028404	UPF1	99	97.716	ENSSPUG00000010538	UPF1	94	97.716	Sphenodon_punctatus
ENSMLEG00000028404	UPF1	99	90.114	ENSSPAG00000000003	upf1	95	90.142	Stegastes_partitus
ENSMLEG00000028404	UPF1	99	94.011	ENSSPAG00000011521	-	95	94.011	Stegastes_partitus
ENSMLEG00000028404	UPF1	99	99.715	ENSSSCG00000039301	UPF1	99	98.668	Sus_scrofa
ENSMLEG00000028404	UPF1	82	91.425	ENSTGUG00000001057	UPF1	89	97.329	Taeniopygia_guttata
ENSMLEG00000028404	UPF1	99	92.776	ENSTRUG00000005131	-	95	92.871	Takifugu_rubripes
ENSMLEG00000028404	UPF1	99	91.912	ENSTRUG00000000150	upf1	95	91.912	Takifugu_rubripes
ENSMLEG00000028404	UPF1	99	94.862	ENSTTRG00000011544	UPF1	93	94.862	Tursiops_truncatus
ENSMLEG00000028404	UPF1	99	98.668	ENSUAMG00000007093	UPF1	93	98.668	Ursus_americanus
ENSMLEG00000028404	UPF1	99	99.715	ENSUMAG00000006652	UPF1	99	98.769	Ursus_maritimus
ENSMLEG00000028404	UPF1	99	98.763	ENSVVUG00000007797	UPF1	93	98.763	Vulpes_vulpes
ENSMLEG00000028404	UPF1	99	83.602	ENSXETG00000013602	upf1	93	83.602	Xenopus_tropicalis
ENSMLEG00000028404	UPF1	96	90.837	ENSXCOG00000015275	-	91	90.837	Xiphophorus_couchianus
ENSMLEG00000028404	UPF1	99	93.858	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSMLEG00000028404	UPF1	99	91.065	ENSXMAG00000001703	-	95	91.065	Xiphophorus_maculatus
ENSMLEG00000028404	UPF1	99	93.536	ENSXMAG00000002540	-	95	93.536	Xiphophorus_maculatus