EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMLEG00000029353 (Gene tree)
Gene ID: 105544692
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Mandrillus_leucophaeus
Status: putative
Strand: Plus strand
Length: 245284 bases
Position: chrKN975267.1:590621-835904
Accession: 105544692
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMLEP00000010465	EST1	PF10374.9	5.1e-15	1	1
ENSMLEP00000010452	EST1	PF10374.9	5.2e-15	1	1
ENSMLEP00000010465	EST1_DNA_bind	PF10373.9	5.3e-54	1	1
ENSMLEP00000010452	EST1_DNA_bind	PF10373.9	2.5e-36	1	2
ENSMLEP00000010452	EST1_DNA_bind	PF10373.9	2.5e-36	2	2
ENSMLEP00000010465	PIN_4	PF13638.6	6.1e-21	1	1
ENSMLEP00000010452	PIN_4	PF13638.6	6.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMLET00000033865	SMG6-201	4140	XM_011987266	ENSMLEP00000010452	1379 (aa)	XP_011842656	A0A2K5Y4H0
ENSMLET00000033878	SMG6-202	3957	-	ENSMLEP00000010465	1318 (aa)	-	A0A2K5Y4M1

Gene Model

Click here to download ENSMLEG00000029353's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMLEG00000029353's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMLEG00000029353	SMG6	99	94.521	ENSG00000070366	SMG6	100	99.217	Homo_sapiens
ENSMLEG00000029353	SMG6	84	59.683	ENSAPOG00000019448	smg6	70	60.035	Acanthochromis_polyacanthus
ENSMLEG00000029353	SMG6	100	96.992	ENSAMEG00000007632	SMG6	93	96.992	Ailuropoda_melanoleuca
ENSMLEG00000029353	SMG6	71	63.311	ENSAOCG00000002630	smg6	70	59.683	Amphiprion_ocellaris
ENSMLEG00000029353	SMG6	71	63.311	ENSAPEG00000019101	smg6	70	59.683	Amphiprion_percula
ENSMLEG00000029353	SMG6	84	60.035	ENSATEG00000006483	smg6	86	60.281	Anabas_testudineus
ENSMLEG00000029353	SMG6	86	67.680	ENSACAG00000011783	SMG6	90	69.613	Anolis_carolinensis
ENSMLEG00000029353	SMG6	100	98.308	ENSANAG00000035760	SMG6	98	93.511	Aotus_nancymaae
ENSMLEG00000029353	SMG6	71	61.712	ENSACLG00000005288	smg6	81	60.177	Astatotilapia_calliptera
ENSMLEG00000029353	SMG6	73	63.670	ENSAMXG00000017326	smg6	93	62.569	Astyanax_mexicanus
ENSMLEG00000029353	SMG6	99	96.992	ENSBTAG00000000267	SMG6	93	96.992	Bos_taurus
ENSMLEG00000029353	SMG6	100	98.120	ENSCJAG00000001820	SMG6	93	98.120	Callithrix_jacchus
ENSMLEG00000029353	SMG6	99	96.805	ENSCAFG00000019260	SMG6	93	96.805	Canis_familiaris
ENSMLEG00000029353	SMG6	99	96.805	ENSCAFG00020009770	SMG6	93	96.805	Canis_lupus_dingo
ENSMLEG00000029353	SMG6	99	97.368	ENSCHIG00000021998	SMG6	93	97.368	Capra_hircus
ENSMLEG00000029353	SMG6	100	97.180	ENSTSYG00000003406	SMG6	100	97.065	Carlito_syrichta
ENSMLEG00000029353	SMG6	99	76.112	ENSCAPG00000016197	SMG6	99	82.670	Cavia_aperea
ENSMLEG00000029353	SMG6	100	96.429	ENSCPOG00000014878	SMG6	97	92.544	Cavia_porcellus
ENSMLEG00000029353	SMG6	100	98.308	ENSCCAG00000035801	SMG6	98	93.439	Cebus_capucinus
ENSMLEG00000029353	SMG6	100	99.436	ENSCATG00000031956	SMG6	98	96.972	Cercocebus_atys
ENSMLEG00000029353	SMG6	99	89.906	ENSCLAG00000006748	SMG6	99	89.906	Chinchilla_lanigera
ENSMLEG00000029353	SMG6	100	99.812	ENSCSAG00000013800	SMG6	98	97.044	Chlorocebus_sabaeus
ENSMLEG00000029353	SMG6	51	98.507	ENSCHOG00000005024	-	59	98.507	Choloepus_hoffmanni
ENSMLEG00000029353	SMG6	100	82.707	ENSCPBG00000020369	SMG6	93	82.707	Chrysemys_picta_bellii
ENSMLEG00000029353	SMG6	99	96.395	ENSCANG00000031764	SMG6	100	100.000	Colobus_angolensis_palliatus
ENSMLEG00000029353	SMG6	61	84.243	ENSCGRG00001019595	Smg6	94	87.701	Cricetulus_griseus_chok1gshd
ENSMLEG00000029353	SMG6	99	86.752	ENSCGRG00000007782	Smg6	99	83.685	Cricetulus_griseus_crigri
ENSMLEG00000029353	SMG6	88	61.957	ENSCSEG00000012757	smg6	77	62.088	Cynoglossus_semilaevis
ENSMLEG00000029353	SMG6	86	62.749	ENSDARG00000100481	smg6	73	63.071	Danio_rerio
ENSMLEG00000029353	SMG6	100	96.805	ENSDNOG00000048283	SMG6	93	96.805	Dasypus_novemcinctus
ENSMLEG00000029353	SMG6	100	97.744	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
ENSMLEG00000029353	SMG6	53	32.990	FBgn0039260	Smg6	70	32.990	Drosophila_melanogaster
ENSMLEG00000029353	SMG6	92	100.000	ENSETEG00000016790	SMG6	91	100.000	Echinops_telfairi
ENSMLEG00000029353	SMG6	68	55.888	ENSEBUG00000005059	smg6	63	55.536	Eptatretus_burgeri
ENSMLEG00000029353	SMG6	99	97.547	ENSEASG00005009318	SMG6	92	97.547	Equus_asinus_asinus
ENSMLEG00000029353	SMG6	99	97.358	ENSECAG00000006519	SMG6	92	97.358	Equus_caballus
ENSMLEG00000029353	SMG6	99	85.338	ENSEEUG00000003493	SMG6	93	85.338	Erinaceus_europaeus
ENSMLEG00000029353	SMG6	71	62.929	ENSELUG00000005934	smg6	65	63.291	Esox_lucius
ENSMLEG00000029353	SMG6	99	97.368	ENSFCAG00000028817	SMG6	99	91.541	Felis_catus
ENSMLEG00000029353	SMG6	99	83.835	ENSFALG00000006538	SMG6	95	83.835	Ficedula_albicollis
ENSMLEG00000029353	SMG6	100	96.617	ENSFDAG00000015106	SMG6	93	96.617	Fukomys_damarensis
ENSMLEG00000029353	SMG6	84	57.968	ENSFHEG00000013282	smg6	70	58.217	Fundulus_heteroclitus
ENSMLEG00000029353	SMG6	66	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSMLEG00000029353	SMG6	100	83.865	ENSGALG00000003108	SMG6	91	83.677	Gallus_gallus
ENSMLEG00000029353	SMG6	84	58.783	ENSGAFG00000000379	smg6	70	58.609	Gambusia_affinis
ENSMLEG00000029353	SMG6	92	60.980	ENSGACG00000020521	smg6	95	60.289	Gasterosteus_aculeatus
ENSMLEG00000029353	SMG6	99	83.083	ENSGAGG00000025617	SMG6	95	83.083	Gopherus_agassizii
ENSMLEG00000029353	SMG6	99	95.746	ENSGGOG00000017156	SMG6	98	95.746	Gorilla_gorilla
ENSMLEG00000029353	SMG6	89	60.213	ENSHBUG00000021311	smg6	73	60.213	Haplochromis_burtoni
ENSMLEG00000029353	SMG6	100	96.805	ENSHGLG00000012882	SMG6	93	96.805	Heterocephalus_glaber_female
ENSMLEG00000029353	SMG6	100	96.805	ENSHGLG00100017815	SMG6	93	96.805	Heterocephalus_glaber_male
ENSMLEG00000029353	SMG6	71	62.353	ENSHCOG00000008761	smg6	78	61.792	Hippocampus_comes
ENSMLEG00000029353	SMG6	84	53.145	ENSIPUG00000012493	smg6	75	52.467	Ictalurus_punctatus
ENSMLEG00000029353	SMG6	100	97.932	ENSSTOG00000028127	SMG6	97	94.760	Ictidomys_tridecemlineatus
ENSMLEG00000029353	SMG6	77	95.279	ENSJJAG00000015367	Smg6	92	83.333	Jaculus_jaculus
ENSMLEG00000029353	SMG6	73	60.730	ENSKMAG00000000279	smg6	86	60.424	Kryptolebias_marmoratus
ENSMLEG00000029353	SMG6	60	58.902	ENSLACG00000000806	-	98	59.345	Latimeria_chalumnae
ENSMLEG00000029353	SMG6	73	69.074	ENSLOCG00000006448	smg6	95	69.074	Lepisosteus_oculatus
ENSMLEG00000029353	SMG6	99	90.195	ENSLAFG00000001261	SMG6	98	90.195	Loxodonta_africana
ENSMLEG00000029353	SMG6	100	100.000	ENSMFAG00000003394	SMG6	98	97.116	Macaca_fascicularis
ENSMLEG00000029353	SMG6	100	100.000	ENSMMUG00000023161	SMG6	98	97.044	Macaca_mulatta
ENSMLEG00000029353	SMG6	100	94.617	ENSMNEG00000044592	SMG6	98	95.099	Macaca_nemestrina
ENSMLEG00000029353	SMG6	84	60.664	ENSMAMG00000020119	smg6	93	60.733	Mastacembelus_armatus
ENSMLEG00000029353	SMG6	71	61.745	ENSMZEG00005024736	smg6	75	60.177	Maylandia_zebra
ENSMLEG00000029353	SMG6	72	77.914	ENSMGAG00000005401	-	90	77.914	Meleagris_gallopavo
ENSMLEG00000029353	SMG6	99	92.502	ENSMICG00000012913	SMG6	98	92.502	Microcebus_murinus
ENSMLEG00000029353	SMG6	92	61.792	ENSMMOG00000010883	smg6	86	63.148	Mola_mola
ENSMLEG00000029353	SMG6	100	95.301	ENSMODG00000010622	SMG6	93	95.301	Monodelphis_domestica
ENSMLEG00000029353	SMG6	84	59.227	ENSMALG00000001106	smg6	69	59.266	Monopterus_albus
ENSMLEG00000029353	SMG6	100	97.368	MGP_CAROLIEiJ_G0016729	Smg6	93	97.368	Mus_caroli
ENSMLEG00000029353	SMG6	100	97.368	ENSMUSG00000038290	Smg6	93	97.368	Mus_musculus
ENSMLEG00000029353	SMG6	100	96.805	MGP_PahariEiJ_G0017866	Smg6	93	96.805	Mus_pahari
ENSMLEG00000029353	SMG6	100	97.368	MGP_SPRETEiJ_G0017572	Smg6	93	97.368	Mus_spretus
ENSMLEG00000029353	SMG6	99	96.617	ENSMPUG00000013046	SMG6	99	90.753	Mustela_putorius_furo
ENSMLEG00000029353	SMG6	100	97.368	ENSMLUG00000005739	SMG6	93	97.368	Myotis_lucifugus
ENSMLEG00000029353	SMG6	100	95.865	ENSNGAG00000007287	Smg6	95	95.865	Nannospalax_galili
ENSMLEG00000029353	SMG6	89	59.464	ENSNBRG00000009511	smg6	82	59.532	Neolamprologus_brichardi
ENSMLEG00000029353	SMG6	99	95.347	ENSNLEG00000017171	SMG6	100	99.413	Nomascus_leucogenys
ENSMLEG00000029353	SMG6	99	94.727	ENSMEUG00000015804	SMG6	95	94.737	Notamacropus_eugenii
ENSMLEG00000029353	SMG6	59	98.387	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSMLEG00000029353	SMG6	99	86.081	ENSODEG00000008038	SMG6	98	86.081	Octodon_degus
ENSMLEG00000029353	SMG6	99	60.391	ENSONIG00000005594	smg6	92	60.568	Oreochromis_niloticus
ENSMLEG00000029353	SMG6	100	96.623	ENSOCUG00000013018	SMG6	93	97.186	Oryctolagus_cuniculus
ENSMLEG00000029353	SMG6	84	58.319	ENSORLG00000003317	smg6	70	59.194	Oryzias_latipes
ENSMLEG00000029353	SMG6	84	58.627	ENSORLG00020015343	smg6	70	58.627	Oryzias_latipes_hni
ENSMLEG00000029353	SMG6	84	58.144	ENSORLG00015020454	smg6	70	58.844	Oryzias_latipes_hsok
ENSMLEG00000029353	SMG6	87	58.596	ENSOMEG00000010838	smg6	70	58.772	Oryzias_melastigma
ENSMLEG00000029353	SMG6	99	91.931	ENSOGAG00000004483	SMG6	98	91.931	Otolemur_garnettii
ENSMLEG00000029353	SMG6	100	97.180	ENSOARG00000015076	SMG6	95	97.180	Ovis_aries
ENSMLEG00000029353	SMG6	99	95.458	ENSPPAG00000043296	SMG6	98	95.458	Pan_paniscus
ENSMLEG00000029353	SMG6	99	97.368	ENSPPRG00000014581	SMG6	99	91.613	Panthera_pardus
ENSMLEG00000029353	SMG6	99	97.368	ENSPTIG00000008925	SMG6	100	97.260	Panthera_tigris_altaica
ENSMLEG00000029353	SMG6	99	95.530	ENSPTRG00000008544	SMG6	100	99.217	Pan_troglodytes
ENSMLEG00000029353	SMG6	100	100.000	ENSPANG00000024588	SMG6	98	97.044	Papio_anubis
ENSMLEG00000029353	SMG6	89	68.182	ENSPSIG00000006660	SMG6	96	68.260	Pelodiscus_sinensis
ENSMLEG00000029353	SMG6	97	70.130	ENSPMGG00000000844	smg6	92	70.130	Periophthalmus_magnuspinnatus
ENSMLEG00000029353	SMG6	100	97.180	ENSPEMG00000020707	Smg6	97	93.805	Peromyscus_maniculatus_bairdii
ENSMLEG00000029353	SMG6	99	61.002	ENSPFOG00000012035	smg6	92	61.331	Poecilia_formosa
ENSMLEG00000029353	SMG6	77	58.772	ENSPLAG00000017660	smg6	87	58.772	Poecilia_latipinna
ENSMLEG00000029353	SMG6	77	58.988	ENSPMEG00000000258	smg6	87	59.298	Poecilia_mexicana
ENSMLEG00000029353	SMG6	84	58.916	ENSPREG00000010066	smg6	86	58.916	Poecilia_reticulata
ENSMLEG00000029353	SMG6	100	94.275	ENSPPYG00000007790	SMG6	98	89.856	Pongo_abelii
ENSMLEG00000029353	SMG6	100	88.550	ENSPCAG00000000552	SMG6	98	85.941	Procavia_capensis
ENSMLEG00000029353	SMG6	100	97.744	ENSPCOG00000020925	SMG6	93	97.744	Propithecus_coquereli
ENSMLEG00000029353	SMG6	85	96.805	ENSPVAG00000002159	SMG6	79	96.805	Pteropus_vampyrus
ENSMLEG00000029353	SMG6	89	62.799	ENSPNYG00000024151	smg6	81	62.799	Pundamilia_nyererei
ENSMLEG00000029353	SMG6	86	53.939	ENSPNAG00000015480	smg6	90	49.034	Pygocentrus_nattereri
ENSMLEG00000029353	SMG6	100	97.180	ENSRNOG00000003041	Smg6	93	97.180	Rattus_norvegicus
ENSMLEG00000029353	SMG6	99	96.179	ENSRBIG00000024746	SMG6	98	96.179	Rhinopithecus_bieti
ENSMLEG00000029353	SMG6	99	97.579	ENSRROG00000030423	SMG6	100	99.609	Rhinopithecus_roxellana
ENSMLEG00000029353	SMG6	100	98.308	ENSSBOG00000022518	SMG6	98	91.709	Saimiri_boliviensis_boliviensis
ENSMLEG00000029353	SMG6	99	83.106	ENSSHAG00000010045	SMG6	98	83.106	Sarcophilus_harrisii
ENSMLEG00000029353	SMG6	72	64.388	ENSSFOG00015005436	smg6	69	64.158	Scleropages_formosus
ENSMLEG00000029353	SMG6	84	59.091	ENSSMAG00000019777	smg6	69	58.741	Scophthalmus_maximus
ENSMLEG00000029353	SMG6	84	59.825	ENSSDUG00000016412	smg6	69	59.686	Seriola_dumerili
ENSMLEG00000029353	SMG6	81	57.824	ENSSLDG00000020747	smg6	72	57.875	Seriola_lalandi_dorsalis
ENSMLEG00000029353	SMG6	99	82.463	ENSSPUG00000007152	SMG6	93	82.276	Sphenodon_punctatus
ENSMLEG00000029353	SMG6	71	62.416	ENSSPAG00000015633	smg6	70	59.965	Stegastes_partitus
ENSMLEG00000029353	SMG6	99	96.992	ENSSSCG00000017826	SMG6	94	96.970	Sus_scrofa
ENSMLEG00000029353	SMG6	100	84.586	ENSTGUG00000005836	SMG6	93	84.586	Taeniopygia_guttata
ENSMLEG00000029353	SMG6	99	59.677	ENSTRUG00000000358	smg6	90	59.313	Takifugu_rubripes
ENSMLEG00000029353	SMG6	99	61.071	ENSTNIG00000016164	smg6	93	61.250	Tetraodon_nigroviridis
ENSMLEG00000029353	SMG6	100	89.313	ENSTBEG00000011424	SMG6	98	87.383	Tupaia_belangeri
ENSMLEG00000029353	SMG6	90	100.000	ENSTTRG00000001175	SMG6	83	100.000	Tursiops_truncatus
ENSMLEG00000029353	SMG6	99	96.636	ENSUAMG00000025152	SMG6	95	96.449	Ursus_americanus
ENSMLEG00000029353	SMG6	99	97.180	ENSUMAG00000009306	SMG6	95	97.180	Ursus_maritimus
ENSMLEG00000029353	SMG6	84	92.593	ENSVPAG00000000225	SMG6	86	92.593	Vicugna_pacos
ENSMLEG00000029353	SMG6	99	96.805	ENSVVUG00000021727	SMG6	93	96.805	Vulpes_vulpes
ENSMLEG00000029353	SMG6	100	58.411	ENSXETG00000023799	SMG6	99	58.196	Xenopus_tropicalis
ENSMLEG00000029353	SMG6	72	61.636	ENSXCOG00000009867	smg6	70	61.636	Xiphophorus_couchianus
ENSMLEG00000029353	SMG6	84	58.957	ENSXMAG00000010321	smg6	70	58.957	Xiphophorus_maculatus