EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMLEG00000043198 (Gene tree)
Gene ID: 105545810
Gene Symbol: SMARCA1
Alias: ISWI|NURF140|SNF2L|SNF2L1|SNF2LB|SWI|hSNF2L
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mandrillus_leucophaeus
Status: putative
Strand: Plus strand
Length: 73902 bases
Position: chrKN975617.1:3802563-3876464
Accession: 105545810
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMLEP00000038396	ResIII	PF04851.15	7.7e-12	1	1
ENSMLEP00000038390	ResIII	PF04851.15	7.7e-12	1	1
ENSMLEP00000038390	DEAD	PF00270.29	1.4e-06	1	1
ENSMLEP00000038396	DEAD	PF00270.29	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMLET00000062001	SMARCA1-201	3982	XM_011988852	ENSMLEP00000038390	1058 (aa)	XP_011844242	A0A2K6AEC0
ENSMLET00000062007	SMARCA1-202	3213	XM_011988851	ENSMLEP00000038396	1070 (aa)	XP_011844241	A0A2K6AEA3

Gene Model

Click here to download ENSMLEG00000043198's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMLEG00000043198's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMLEG00000043198	SMARCA1	51	48.207	ENSMLEG00000041751	HELLS	78	48.207
ENSMLEG00000043198	SMARCA1	50	41.385	ENSMLEG00000031965	CHD6	75	40.048
ENSMLEG00000043198	SMARCA1	54	43.201	ENSMLEG00000030900	CHD1L	61	44.112
ENSMLEG00000043198	SMARCA1	93	85.035	ENSMLEG00000042393	SMARCA5	94	85.035

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMLEG00000043198	SMARCA1	100	99.907	ENSG00000102038	SMARCA1	100	99.907	Homo_sapiens
ENSMLEG00000043198	SMARCA1	92	83.709	ENSAPOG00000016035	smarca5	98	84.026	Acanthochromis_polyacanthus
ENSMLEG00000043198	SMARCA1	100	96.916	ENSAMEG00000015218	SMARCA1	100	96.916	Ailuropoda_melanoleuca
ENSMLEG00000043198	SMARCA1	85	84.053	ENSACIG00000016982	smarca5	99	84.152	Amphilophus_citrinellus
ENSMLEG00000043198	SMARCA1	92	83.709	ENSAOCG00000015578	smarca5	95	82.762	Amphiprion_ocellaris
ENSMLEG00000043198	SMARCA1	92	83.709	ENSAPEG00000011117	smarca5	99	84.080	Amphiprion_percula
ENSMLEG00000043198	SMARCA1	93	83.299	ENSATEG00000012894	smarca5	94	83.714	Anabas_testudineus
ENSMLEG00000043198	SMARCA1	93	93.177	ENSAPLG00000013149	SMARCA1	100	93.177	Anas_platyrhynchos
ENSMLEG00000043198	SMARCA1	97	89.612	ENSACAG00000011376	SMARCA1	95	91.491	Anolis_carolinensis
ENSMLEG00000043198	SMARCA1	100	94.707	ENSANAG00000023098	SMARCA1	100	94.707	Aotus_nancymaae
ENSMLEG00000043198	SMARCA1	96	81.158	ENSACLG00000025356	smarca5	95	83.165	Astatotilapia_calliptera
ENSMLEG00000043198	SMARCA1	98	80.754	ENSAMXG00000005709	smarca5	94	84.000	Astyanax_mexicanus
ENSMLEG00000043198	SMARCA1	88	88.495	ENSAMXG00000011227	smarca1	99	90.182	Astyanax_mexicanus
ENSMLEG00000043198	SMARCA1	99	97.356	ENSBTAG00000002292	SMARCA1	99	97.333	Bos_taurus
ENSMLEG00000043198	SMARCA1	93	63.673	WBGene00002169	isw-1	97	63.673	Caenorhabditis_elegans
ENSMLEG00000043198	SMARCA1	100	99.622	ENSCJAG00000002868	SMARCA1	100	99.622	Callithrix_jacchus
ENSMLEG00000043198	SMARCA1	100	88.848	ENSCAFG00000018673	SMARCA1	99	88.706	Canis_familiaris
ENSMLEG00000043198	SMARCA1	100	98.582	ENSCAFG00020001751	SMARCA1	100	98.582	Canis_lupus_dingo
ENSMLEG00000043198	SMARCA1	100	97.455	ENSCHIG00000009837	SMARCA1	100	97.455	Capra_hircus
ENSMLEG00000043198	SMARCA1	95	98.800	ENSTSYG00000004240	SMARCA1	98	98.167	Carlito_syrichta
ENSMLEG00000043198	SMARCA1	100	95.583	ENSCPOG00000013601	SMARCA1	100	95.583	Cavia_porcellus
ENSMLEG00000043198	SMARCA1	100	96.692	ENSCCAG00000030817	SMARCA1	100	96.692	Cebus_capucinus
ENSMLEG00000043198	SMARCA1	100	99.907	ENSCATG00000015921	SMARCA1	100	99.907	Cercocebus_atys
ENSMLEG00000043198	SMARCA1	100	97.164	ENSCLAG00000002171	SMARCA1	100	97.164	Chinchilla_lanigera
ENSMLEG00000043198	SMARCA1	100	99.811	ENSCSAG00000008460	SMARCA1	100	99.811	Chlorocebus_sabaeus
ENSMLEG00000043198	SMARCA1	95	92.607	ENSCPBG00000001146	SMARCA1	94	92.693	Chrysemys_picta_bellii
ENSMLEG00000043198	SMARCA1	92	73.797	ENSCING00000004110	swi/snf	97	73.797	Ciona_intestinalis
ENSMLEG00000043198	SMARCA1	92	73.069	ENSCSAVG00000004620	-	100	74.165	Ciona_savignyi
ENSMLEG00000043198	SMARCA1	100	99.813	ENSCANG00000007183	SMARCA1	100	99.813	Colobus_angolensis_palliatus
ENSMLEG00000043198	SMARCA1	100	95.845	ENSCGRG00001010776	Smarca1	98	96.246	Cricetulus_griseus_chok1gshd
ENSMLEG00000043198	SMARCA1	93	95.779	ENSCGRG00000015301	Smarca1	98	96.255	Cricetulus_griseus_crigri
ENSMLEG00000043198	SMARCA1	92	83.709	ENSCSEG00000000328	smarca5	95	83.114	Cynoglossus_semilaevis
ENSMLEG00000043198	SMARCA1	93	83.096	ENSCVAG00000008668	smarca5	99	83.628	Cyprinodon_variegatus
ENSMLEG00000043198	SMARCA1	93	82.727	ENSDARG00000052348	smarca5	95	82.727	Danio_rerio
ENSMLEG00000043198	SMARCA1	93	85.277	ENSDARG00000012776	smarca1	97	85.277	Danio_rerio
ENSMLEG00000043198	SMARCA1	98	96.232	ENSDNOG00000004315	SMARCA1	99	96.232	Dasypus_novemcinctus
ENSMLEG00000043198	SMARCA1	98	96.329	ENSDORG00000009270	Smarca1	99	96.329	Dipodomys_ordii
ENSMLEG00000043198	SMARCA1	92	73.081	FBgn0011604	Iswi	98	72.305	Drosophila_melanogaster
ENSMLEG00000043198	SMARCA1	77	93.750	ENSETEG00000017426	SMARCA1	85	93.750	Echinops_telfairi
ENSMLEG00000043198	SMARCA1	93	80.899	ENSEBUG00000001239	smarca5	96	80.899	Eptatretus_burgeri
ENSMLEG00000043198	SMARCA1	97	92.692	ENSEASG00005008218	SMARCA1	100	93.333	Equus_asinus_asinus
ENSMLEG00000043198	SMARCA1	100	97.926	ENSECAG00000012106	SMARCA1	100	97.926	Equus_caballus
ENSMLEG00000043198	SMARCA1	75	97.682	ENSEEUG00000014927	SMARCA1	83	97.682	Erinaceus_europaeus
ENSMLEG00000043198	SMARCA1	94	86.441	ENSELUG00000010515	smarca1	98	86.812	Esox_lucius
ENSMLEG00000043198	SMARCA1	100	98.582	ENSFCAG00000018496	SMARCA1	100	98.582	Felis_catus
ENSMLEG00000043198	SMARCA1	86	93.538	ENSFALG00000000209	SMARCA1	98	93.640	Ficedula_albicollis
ENSMLEG00000043198	SMARCA1	93	98.083	ENSFDAG00000009818	SMARCA1	97	98.083	Fukomys_damarensis
ENSMLEG00000043198	SMARCA1	99	79.103	ENSFHEG00000007687	smarca5	94	82.828	Fundulus_heteroclitus
ENSMLEG00000043198	SMARCA1	94	90.937	ENSGALG00000008431	SMARCA1	96	92.916	Gallus_gallus
ENSMLEG00000043198	SMARCA1	93	83.503	ENSGAFG00000017731	smarca5	95	82.828	Gambusia_affinis
ENSMLEG00000043198	SMARCA1	92	93.416	ENSGAGG00000023575	SMARCA1	100	93.416	Gopherus_agassizii
ENSMLEG00000043198	SMARCA1	75	96.000	ENSGGOG00000012841	-	98	96.000	Gorilla_gorilla
ENSMLEG00000043198	SMARCA1	100	97.164	ENSHGLG00000003080	SMARCA1	100	97.164	Heterocephalus_glaber_female
ENSMLEG00000043198	SMARCA1	94	96.903	ENSHGLG00100001102	SMARCA1	100	96.903	Heterocephalus_glaber_male
ENSMLEG00000043198	SMARCA1	92	83.538	ENSHCOG00000005458	smarca5	95	82.727	Hippocampus_comes
ENSMLEG00000043198	SMARCA1	95	85.050	ENSIPUG00000016905	Smarca1	99	86.823	Ictalurus_punctatus
ENSMLEG00000043198	SMARCA1	97	80.607	ENSIPUG00000005229	SMARCA5	97	82.657	Ictalurus_punctatus
ENSMLEG00000043198	SMARCA1	100	98.204	ENSSTOG00000014524	SMARCA1	100	98.204	Ictidomys_tridecemlineatus
ENSMLEG00000043198	SMARCA1	100	96.237	ENSJJAG00000002593	Smarca1	100	96.237	Jaculus_jaculus
ENSMLEG00000043198	SMARCA1	92	83.742	ENSKMAG00000003777	smarca5	95	82.929	Kryptolebias_marmoratus
ENSMLEG00000043198	SMARCA1	88	83.888	ENSLBEG00000013295	SMARCA1	100	84.829	Labrus_bergylta
ENSMLEG00000043198	SMARCA1	94	81.637	ENSLBEG00000018112	smarca5	95	82.626	Labrus_bergylta
ENSMLEG00000043198	SMARCA1	96	89.250	ENSLACG00000016697	SMARCA1	98	90.190	Latimeria_chalumnae
ENSMLEG00000043198	SMARCA1	94	88.855	ENSLOCG00000014591	smarca1	97	88.855	Lepisosteus_oculatus
ENSMLEG00000043198	SMARCA1	95	96.720	ENSLAFG00000000896	SMARCA1	100	96.720	Loxodonta_africana
ENSMLEG00000043198	SMARCA1	100	99.907	ENSMFAG00000002117	SMARCA1	100	99.907	Macaca_fascicularis
ENSMLEG00000043198	SMARCA1	100	99.907	ENSMMUG00000008818	SMARCA1	100	99.907	Macaca_mulatta
ENSMLEG00000043198	SMARCA1	100	99.907	ENSMNEG00000041768	SMARCA1	100	99.907	Macaca_nemestrina
ENSMLEG00000043198	SMARCA1	93	83.707	ENSMAMG00000014294	smarca5	96	82.583	Mastacembelus_armatus
ENSMLEG00000043198	SMARCA1	96	81.158	ENSMZEG00005009369	smarca5	95	83.165	Maylandia_zebra
ENSMLEG00000043198	SMARCA1	95	91.232	ENSMGAG00000007042	SMARCA1	99	91.395	Meleagris_gallopavo
ENSMLEG00000043198	SMARCA1	98	96.180	ENSMAUG00000008133	Smarca1	99	95.769	Mesocricetus_auratus
ENSMLEG00000043198	SMARCA1	100	98.299	ENSMICG00000015768	SMARCA1	100	98.299	Microcebus_murinus
ENSMLEG00000043198	SMARCA1	100	95.579	ENSMOCG00000009464	Smarca1	98	95.973	Microtus_ochrogaster
ENSMLEG00000043198	SMARCA1	93	81.231	ENSMMOG00000005547	smarca5	99	81.231	Mola_mola
ENSMLEG00000043198	SMARCA1	98	89.555	ENSMODG00000013187	-	99	89.545	Monodelphis_domestica
ENSMLEG00000043198	SMARCA1	92	83.333	ENSMALG00000002081	smarca5	97	82.922	Monopterus_albus
ENSMLEG00000043198	SMARCA1	100	95.767	MGP_CAROLIEiJ_G0033034	Smarca1	100	95.767	Mus_caroli
ENSMLEG00000043198	SMARCA1	100	95.767	ENSMUSG00000031099	Smarca1	100	95.767	Mus_musculus
ENSMLEG00000043198	SMARCA1	100	95.861	MGP_PahariEiJ_G0031579	Smarca1	100	95.861	Mus_pahari
ENSMLEG00000043198	SMARCA1	100	95.861	MGP_SPRETEiJ_G0034192	Smarca1	100	95.861	Mus_spretus
ENSMLEG00000043198	SMARCA1	100	98.131	ENSMPUG00000017423	SMARCA1	95	98.131	Mustela_putorius_furo
ENSMLEG00000043198	SMARCA1	100	94.590	ENSMLUG00000029614	SMARCA1	100	94.030	Myotis_lucifugus
ENSMLEG00000043198	SMARCA1	98	96.944	ENSNGAG00000006492	Smarca1	99	96.944	Nannospalax_galili
ENSMLEG00000043198	SMARCA1	93	83.809	ENSNBRG00000004463	smarca5	99	83.131	Neolamprologus_brichardi
ENSMLEG00000043198	SMARCA1	100	99.065	ENSNLEG00000015179	SMARCA1	100	99.065	Nomascus_leucogenys
ENSMLEG00000043198	SMARCA1	89	82.038	ENSMEUG00000008819	SMARCA1	99	82.019	Notamacropus_eugenii
ENSMLEG00000043198	SMARCA1	98	96.562	ENSODEG00000012163	SMARCA1	99	96.562	Octodon_degus
ENSMLEG00000043198	SMARCA1	96	81.256	ENSONIG00000009993	smarca5	95	83.266	Oreochromis_niloticus
ENSMLEG00000043198	SMARCA1	92	93.827	ENSOANG00000002862	SMARCA1	100	93.827	Ornithorhynchus_anatinus
ENSMLEG00000043198	SMARCA1	100	96.692	ENSOCUG00000001047	SMARCA1	100	96.692	Oryctolagus_cuniculus
ENSMLEG00000043198	SMARCA1	92	83.640	ENSORLG00000021998	smarca5	95	82.828	Oryzias_latipes
ENSMLEG00000043198	SMARCA1	92	83.742	ENSORLG00020017679	smarca5	95	82.929	Oryzias_latipes_hni
ENSMLEG00000043198	SMARCA1	92	83.640	ENSORLG00015017210	smarca5	95	82.727	Oryzias_latipes_hsok
ENSMLEG00000043198	SMARCA1	92	83.640	ENSOMEG00000000086	smarca5	95	82.727	Oryzias_melastigma
ENSMLEG00000043198	SMARCA1	98	98.376	ENSOGAG00000004399	SMARCA1	99	98.376	Otolemur_garnettii
ENSMLEG00000043198	SMARCA1	95	97.236	ENSOARG00000014638	SMARCA1	100	98.776	Ovis_aries
ENSMLEG00000043198	SMARCA1	100	99.907	ENSPPAG00000034647	SMARCA1	100	99.907	Pan_paniscus
ENSMLEG00000043198	SMARCA1	100	98.582	ENSPPRG00000008929	SMARCA1	100	98.582	Panthera_pardus
ENSMLEG00000043198	SMARCA1	95	97.053	ENSPTIG00000000915	SMARCA1	98	97.053	Panthera_tigris_altaica
ENSMLEG00000043198	SMARCA1	100	99.907	ENSPTRG00000049876	SMARCA1	100	99.907	Pan_troglodytes
ENSMLEG00000043198	SMARCA1	100	99.907	ENSPANG00000003871	SMARCA1	100	99.907	Papio_anubis
ENSMLEG00000043198	SMARCA1	89	87.209	ENSPKIG00000013411	smarca1	98	87.020	Paramormyrops_kingsleyae
ENSMLEG00000043198	SMARCA1	95	91.708	ENSPSIG00000010101	SMARCA1	100	93.107	Pelodiscus_sinensis
ENSMLEG00000043198	SMARCA1	98	96.848	ENSPEMG00000017503	Smarca1	99	96.848	Peromyscus_maniculatus_bairdii
ENSMLEG00000043198	SMARCA1	95	92.108	ENSPCIG00000015460	SMARCA1	98	92.192	Phascolarctos_cinereus
ENSMLEG00000043198	SMARCA1	92	83.742	ENSPFOG00000007649	smarca5	95	82.828	Poecilia_formosa
ENSMLEG00000043198	SMARCA1	92	83.742	ENSPLAG00000003363	smarca5	95	82.828	Poecilia_latipinna
ENSMLEG00000043198	SMARCA1	92	83.640	ENSPMEG00000019849	smarca5	95	82.727	Poecilia_mexicana
ENSMLEG00000043198	SMARCA1	92	83.640	ENSPREG00000023250	smarca5	95	82.727	Poecilia_reticulata
ENSMLEG00000043198	SMARCA1	100	97.164	ENSPPYG00000020703	SMARCA1	100	97.164	Pongo_abelii
ENSMLEG00000043198	SMARCA1	77	89.189	ENSPCOG00000020722	SMARCA1	94	93.539	Propithecus_coquereli
ENSMLEG00000043198	SMARCA1	92	97.297	ENSPVAG00000003805	SMARCA1	94	97.297	Pteropus_vampyrus
ENSMLEG00000043198	SMARCA1	55	84.384	ENSPNYG00000012299	smarca5	92	82.933	Pundamilia_nyererei
ENSMLEG00000043198	SMARCA1	100	96.314	ENSRNOG00000003762	Smarca1	100	96.314	Rattus_norvegicus
ENSMLEG00000043198	SMARCA1	100	99.813	ENSRROG00000034167	SMARCA1	100	99.813	Rhinopithecus_roxellana
ENSMLEG00000043198	SMARCA1	96	98.161	ENSSBOG00000020641	SMARCA1	100	99.694	Saimiri_boliviensis_boliviensis
ENSMLEG00000043198	SMARCA1	92	86.742	ENSSHAG00000013518	SMARCA1	99	86.742	Sarcophilus_harrisii
ENSMLEG00000043198	SMARCA1	98	85.217	ENSSFOG00015009043	smarca1	98	87.575	Scleropages_formosus
ENSMLEG00000043198	SMARCA1	95	82.154	ENSSFOG00015016794	smarca5	100	83.814	Scleropages_formosus
ENSMLEG00000043198	SMARCA1	93	82.371	ENSSMAG00000004801	smarca5	95	82.371	Scophthalmus_maximus
ENSMLEG00000043198	SMARCA1	93	83.198	ENSSDUG00000020690	smarca5	96	82.525	Seriola_dumerili
ENSMLEG00000043198	SMARCA1	93	83.198	ENSSLDG00000025190	smarca5	96	82.525	Seriola_lalandi_dorsalis
ENSMLEG00000043198	SMARCA1	85	90.275	ENSSARG00000000842	SMARCA1	92	90.275	Sorex_araneus
ENSMLEG00000043198	SMARCA1	92	92.119	ENSSPUG00000000590	SMARCA1	94	92.103	Sphenodon_punctatus
ENSMLEG00000043198	SMARCA1	93	83.299	ENSSPAG00000002894	smarca5	97	84.026	Stegastes_partitus
ENSMLEG00000043198	SMARCA1	98	97.688	ENSSSCG00000012649	SMARCA1	99	97.688	Sus_scrofa
ENSMLEG00000043198	SMARCA1	93	92.770	ENSTGUG00000003899	-	100	92.770	Taeniopygia_guttata
ENSMLEG00000043198	SMARCA1	93	83.401	ENSTRUG00000014094	smarca5	95	82.727	Takifugu_rubripes
ENSMLEG00000043198	SMARCA1	92	82.582	ENSTNIG00000017717	smarca5	94	81.616	Tetraodon_nigroviridis
ENSMLEG00000043198	SMARCA1	92	91.203	ENSTBEG00000014973	SMARCA1	99	91.203	Tupaia_belangeri
ENSMLEG00000043198	SMARCA1	92	95.219	ENSTTRG00000006168	SMARCA1	99	95.219	Tursiops_truncatus
ENSMLEG00000043198	SMARCA1	100	98.015	ENSUAMG00000020201	SMARCA1	100	98.015	Ursus_americanus
ENSMLEG00000043198	SMARCA1	95	93.972	ENSUMAG00000004073	SMARCA1	97	98.783	Ursus_maritimus
ENSMLEG00000043198	SMARCA1	77	99.351	ENSVPAG00000010492	-	85	99.351	Vicugna_pacos
ENSMLEG00000043198	SMARCA1	95	98.900	ENSVVUG00000008878	SMARCA1	99	98.955	Vulpes_vulpes
ENSMLEG00000043198	SMARCA1	94	89.347	ENSXETG00000001526	smarca1	99	89.347	Xenopus_tropicalis
ENSMLEG00000043198	SMARCA1	93	83.401	ENSXCOG00000011170	smarca5	98	82.727	Xiphophorus_couchianus
ENSMLEG00000043198	SMARCA1	93	83.401	ENSXMAG00000009678	smarca5	97	84.978	Xiphophorus_maculatus