EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMLUG00000002139 (Gene tree)
Gene ID: 102419884
Gene Symbol: SF3A1
Alias: PRPF21|Prp21|SAP114|SF3a120
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Myotis_lucifugus
Status: putative
Strand: Plus strand
Length: 17167 bases
Position: chrGL430384:404556-421722
Accession: 102419884
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMLUP00000001954	PRP21_like_P	PF12230.8	7.1e-52	1	1
ENSMLUP00000001954	Surp	PF01805.20	4.8e-46	1	2
ENSMLUP00000001954	Surp	PF01805.20	4.8e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMLUT00000002143	SF3A1-201	2508	XM_006104890	ENSMLUP00000001954	793 (aa)	XP_006104952	G1NX67

Gene Model

Click here to download ENSMLUG00000002139's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMLUG00000002139's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMLUG00000002139	SF3A1	100	98.739	ENSG00000099995	SF3A1	100	98.739	Homo_sapiens
ENSMLUG00000002139	SF3A1	100	83.522	ENSAPOG00000020465	sf3a1	99	85.161	Acanthochromis_polyacanthus
ENSMLUG00000002139	SF3A1	100	98.616	ENSAMEG00000007737	SF3A1	100	98.616	Ailuropoda_melanoleuca
ENSMLUG00000002139	SF3A1	100	84.277	ENSACIG00000020672	sf3a1	98	85.807	Amphilophus_citrinellus
ENSMLUG00000002139	SF3A1	100	83.396	ENSAOCG00000003060	sf3a1	99	84.783	Amphiprion_ocellaris
ENSMLUG00000002139	SF3A1	100	83.522	ENSAPEG00000010735	sf3a1	99	84.910	Amphiprion_percula
ENSMLUG00000002139	SF3A1	96	85.938	ENSATEG00000021201	sf3a1	98	85.219	Anabas_testudineus
ENSMLUG00000002139	SF3A1	95	94.188	ENSAPLG00000009057	SF3A1	99	93.290	Anas_platyrhynchos
ENSMLUG00000002139	SF3A1	100	85.837	ENSACAG00000009415	SF3A1	100	87.192	Anolis_carolinensis
ENSMLUG00000002139	SF3A1	100	99.117	ENSANAG00000032045	SF3A1	100	99.117	Aotus_nancymaae
ENSMLUG00000002139	SF3A1	100	84.383	ENSACLG00000012622	sf3a1	99	85.275	Astatotilapia_calliptera
ENSMLUG00000002139	SF3A1	99	83.312	ENSAMXG00000005382	sf3a1	99	84.190	Astyanax_mexicanus
ENSMLUG00000002139	SF3A1	100	99.369	ENSBTAG00000003390	SF3A1	100	99.369	Bos_taurus
ENSMLUG00000002139	SF3A1	84	43.447	WBGene00004188	prp-21	94	43.502	Caenorhabditis_elegans
ENSMLUG00000002139	SF3A1	100	99.243	ENSCJAG00000010370	SF3A1	100	99.243	Callithrix_jacchus
ENSMLUG00000002139	SF3A1	100	99.117	ENSCAFG00000012559	SF3A1	100	99.117	Canis_familiaris
ENSMLUG00000002139	SF3A1	100	99.117	ENSCAFG00020000838	SF3A1	100	99.117	Canis_lupus_dingo
ENSMLUG00000002139	SF3A1	100	99.243	ENSCHIG00000018642	SF3A1	100	99.243	Capra_hircus
ENSMLUG00000002139	SF3A1	100	99.243	ENSTSYG00000004739	SF3A1	100	99.243	Carlito_syrichta
ENSMLUG00000002139	SF3A1	94	81.308	ENSCAPG00000015414	SF3A1	98	81.308	Cavia_aperea
ENSMLUG00000002139	SF3A1	100	99.117	ENSCPOG00000014589	SF3A1	100	99.117	Cavia_porcellus
ENSMLUG00000002139	SF3A1	100	99.117	ENSCCAG00000032006	SF3A1	100	99.117	Cebus_capucinus
ENSMLUG00000002139	SF3A1	100	99.117	ENSCATG00000029241	SF3A1	100	99.117	Cercocebus_atys
ENSMLUG00000002139	SF3A1	100	98.487	ENSCLAG00000006508	SF3A1	100	98.487	Chinchilla_lanigera
ENSMLUG00000002139	SF3A1	100	98.991	ENSCSAG00000009470	SF3A1	100	98.991	Chlorocebus_sabaeus
ENSMLUG00000002139	SF3A1	61	99.083	ENSCHOG00000005201	SF3A1	69	99.083	Choloepus_hoffmanni
ENSMLUG00000002139	SF3A1	100	91.058	ENSCPBG00000007595	SF3A1	100	91.184	Chrysemys_picta_bellii
ENSMLUG00000002139	SF3A1	94	52.249	ENSCING00000008526	-	66	58.046	Ciona_intestinalis
ENSMLUG00000002139	SF3A1	96	51.613	ENSCSAVG00000005608	-	92	62.712	Ciona_savignyi
ENSMLUG00000002139	SF3A1	100	98.991	ENSCANG00000033564	SF3A1	100	98.991	Colobus_angolensis_palliatus
ENSMLUG00000002139	SF3A1	100	98.487	ENSCGRG00001008933	Sf3a1	100	98.487	Cricetulus_griseus_chok1gshd
ENSMLUG00000002139	SF3A1	100	98.487	ENSCGRG00000006127	Sf3a1	100	98.487	Cricetulus_griseus_crigri
ENSMLUG00000002139	SF3A1	100	81.784	ENSCSEG00000010792	sf3a1	99	82.179	Cynoglossus_semilaevis
ENSMLUG00000002139	SF3A1	100	82.893	ENSCVAG00000004560	sf3a1	98	84.115	Cyprinodon_variegatus
ENSMLUG00000002139	SF3A1	100	82.412	ENSDARG00000041887	sf3a1	97	84.746	Danio_rerio
ENSMLUG00000002139	SF3A1	100	98.742	ENSDNOG00000010629	SF3A1	100	98.742	Dasypus_novemcinctus
ENSMLUG00000002139	SF3A1	100	99.369	ENSDORG00000005613	Sf3a1	100	99.369	Dipodomys_ordii
ENSMLUG00000002139	SF3A1	79	61.495	FBgn0266917	Sf3a1	85	59.279	Drosophila_melanogaster
ENSMLUG00000002139	SF3A1	89	96.154	ENSETEG00000017194	SF3A1	100	96.154	Echinops_telfairi
ENSMLUG00000002139	SF3A1	100	65.059	ENSEBUG00000001285	sf3a1	96	67.284	Eptatretus_burgeri
ENSMLUG00000002139	SF3A1	100	99.496	ENSEASG00005010254	SF3A1	100	99.496	Equus_asinus_asinus
ENSMLUG00000002139	SF3A1	100	99.496	ENSECAG00000023962	SF3A1	100	99.496	Equus_caballus
ENSMLUG00000002139	SF3A1	73	95.082	ENSEEUG00000003159	SF3A1	82	95.082	Erinaceus_europaeus
ENSMLUG00000002139	SF3A1	100	82.581	ENSELUG00000022578	sf3a1	98	83.205	Esox_lucius
ENSMLUG00000002139	SF3A1	100	99.369	ENSFCAG00000011932	SF3A1	100	99.369	Felis_catus
ENSMLUG00000002139	SF3A1	95	93.254	ENSFALG00000006944	SF3A1	100	91.688	Ficedula_albicollis
ENSMLUG00000002139	SF3A1	100	98.991	ENSFDAG00000009560	SF3A1	100	98.991	Fukomys_damarensis
ENSMLUG00000002139	SF3A1	100	84.151	ENSFHEG00000010866	sf3a1	98	84.974	Fundulus_heteroclitus
ENSMLUG00000002139	SF3A1	100	81.108	ENSGMOG00000016024	sf3a1	99	80.485	Gadus_morhua
ENSMLUG00000002139	SF3A1	95	94.180	ENSGALG00000007937	SF3A1	100	92.191	Gallus_gallus
ENSMLUG00000002139	SF3A1	100	83.019	ENSGAFG00000009111	sf3a1	99	83.312	Gambusia_affinis
ENSMLUG00000002139	SF3A1	100	82.116	ENSGACG00000011893	sf3a1	97	83.508	Gasterosteus_aculeatus
ENSMLUG00000002139	SF3A1	96	91.196	ENSGAGG00000000762	SF3A1	99	91.327	Gopherus_agassizii
ENSMLUG00000002139	SF3A1	100	98.739	ENSGGOG00000012631	SF3A1	100	98.739	Gorilla_gorilla
ENSMLUG00000002139	SF3A1	100	84.383	ENSHBUG00000015795	sf3a1	99	85.275	Haplochromis_burtoni
ENSMLUG00000002139	SF3A1	100	99.243	ENSHGLG00000007907	SF3A1	100	99.243	Heterocephalus_glaber_female
ENSMLUG00000002139	SF3A1	100	99.243	ENSHGLG00100013799	SF3A1	100	99.243	Heterocephalus_glaber_male
ENSMLUG00000002139	SF3A1	100	80.252	ENSHCOG00000015423	sf3a1	99	80.645	Hippocampus_comes
ENSMLUG00000002139	SF3A1	96	82.552	ENSIPUG00000002470	sf3a1	98	82.812	Ictalurus_punctatus
ENSMLUG00000002139	SF3A1	100	99.496	ENSSTOG00000013892	SF3A1	100	99.496	Ictidomys_tridecemlineatus
ENSMLUG00000002139	SF3A1	100	99.118	ENSJJAG00000022566	Sf3a1	100	99.118	Jaculus_jaculus
ENSMLUG00000002139	SF3A1	100	82.767	ENSKMAG00000002400	sf3a1	99	83.954	Kryptolebias_marmoratus
ENSMLUG00000002139	SF3A1	100	82.390	ENSLBEG00000022974	sf3a1	99	82.968	Labrus_bergylta
ENSMLUG00000002139	SF3A1	100	87.202	ENSLACG00000003565	SF3A1	97	88.411	Latimeria_chalumnae
ENSMLUG00000002139	SF3A1	100	85.213	ENSLOCG00000008251	sf3a1	97	87.013	Lepisosteus_oculatus
ENSMLUG00000002139	SF3A1	100	98.739	ENSLAFG00000000448	SF3A1	100	98.739	Loxodonta_africana
ENSMLUG00000002139	SF3A1	98	61.911	ENSLAFG00000026032	-	98	61.911	Loxodonta_africana
ENSMLUG00000002139	SF3A1	100	98.865	ENSMFAG00000031979	SF3A1	100	98.865	Macaca_fascicularis
ENSMLUG00000002139	SF3A1	100	98.865	ENSMMUG00000005547	SF3A1	100	98.865	Macaca_mulatta
ENSMLUG00000002139	SF3A1	100	98.739	ENSMNEG00000037229	SF3A1	100	98.739	Macaca_nemestrina
ENSMLUG00000002139	SF3A1	100	98.991	ENSMLEG00000041908	SF3A1	100	98.991	Mandrillus_leucophaeus
ENSMLUG00000002139	SF3A1	97	85.770	ENSMAMG00000006460	sf3a1	97	85.899	Mastacembelus_armatus
ENSMLUG00000002139	SF3A1	100	84.383	ENSMZEG00005009633	sf3a1	99	85.275	Maylandia_zebra
ENSMLUG00000002139	SF3A1	95	94.180	ENSMGAG00000001330	SF3A1	99	93.282	Meleagris_gallopavo
ENSMLUG00000002139	SF3A1	92	95.082	ENSMAUG00000020317	Sf3a1	94	95.082	Mesocricetus_auratus
ENSMLUG00000002139	SF3A1	100	98.865	ENSMICG00000010038	SF3A1	100	98.865	Microcebus_murinus
ENSMLUG00000002139	SF3A1	100	98.613	ENSMOCG00000008438	Sf3a1	100	98.613	Microtus_ochrogaster
ENSMLUG00000002139	SF3A1	100	81.509	ENSMMOG00000015588	sf3a1	97	82.682	Mola_mola
ENSMLUG00000002139	SF3A1	100	98.108	ENSMODG00000009270	SF3A1	100	98.108	Monodelphis_domestica
ENSMLUG00000002139	SF3A1	100	84.635	ENSMALG00000000148	sf3a1	99	86.104	Monopterus_albus
ENSMLUG00000002139	SF3A1	100	98.108	MGP_CAROLIEiJ_G0016029	Sf3a1	100	98.108	Mus_caroli
ENSMLUG00000002139	SF3A1	100	98.108	ENSMUSG00000002129	Sf3a1	100	98.108	Mus_musculus
ENSMLUG00000002139	SF3A1	100	97.982	MGP_PahariEiJ_G0016862	Sf3a1	100	97.982	Mus_pahari
ENSMLUG00000002139	SF3A1	100	98.108	MGP_SPRETEiJ_G0016870	Sf3a1	100	98.108	Mus_spretus
ENSMLUG00000002139	SF3A1	100	99.117	ENSMPUG00000013144	SF3A1	100	99.117	Mustela_putorius_furo
ENSMLUG00000002139	SF3A1	100	98.865	ENSNGAG00000016977	Sf3a1	100	98.865	Nannospalax_galili
ENSMLUG00000002139	SF3A1	100	84.509	ENSNBRG00000016642	sf3a1	96	86.825	Neolamprologus_brichardi
ENSMLUG00000002139	SF3A1	100	98.991	ENSNLEG00000003686	SF3A1	100	98.991	Nomascus_leucogenys
ENSMLUG00000002139	SF3A1	96	88.289	ENSMEUG00000008741	SF3A1	100	88.289	Notamacropus_eugenii
ENSMLUG00000002139	SF3A1	100	98.739	ENSOPRG00000016636	SF3A1	100	98.739	Ochotona_princeps
ENSMLUG00000002139	SF3A1	100	98.865	ENSODEG00000002571	SF3A1	100	98.865	Octodon_degus
ENSMLUG00000002139	SF3A1	100	84.105	ENSONIG00000010848	sf3a1	99	84.655	Oreochromis_niloticus
ENSMLUG00000002139	SF3A1	100	99.117	ENSOCUG00000007633	SF3A1	100	99.117	Oryctolagus_cuniculus
ENSMLUG00000002139	SF3A1	96	81.759	ENSORLG00000013050	sf3a1	98	83.558	Oryzias_latipes
ENSMLUG00000002139	SF3A1	96	82.546	ENSORLG00020003236	sf3a1	94	83.693	Oryzias_latipes_hni
ENSMLUG00000002139	SF3A1	100	82.264	ENSORLG00015017411	sf3a1	99	83.871	Oryzias_latipes_hsok
ENSMLUG00000002139	SF3A1	100	82.516	ENSOMEG00000013362	sf3a1	99	83.355	Oryzias_melastigma
ENSMLUG00000002139	SF3A1	100	98.739	ENSOGAG00000012931	SF3A1	100	98.739	Otolemur_garnettii
ENSMLUG00000002139	SF3A1	100	97.478	ENSOARG00000006849	SF3A1	100	97.478	Ovis_aries
ENSMLUG00000002139	SF3A1	100	97.730	ENSPPAG00000041790	SF3A1	100	97.730	Pan_paniscus
ENSMLUG00000002139	SF3A1	100	99.369	ENSPPRG00000004391	SF3A1	100	99.369	Panthera_pardus
ENSMLUG00000002139	SF3A1	97	99.352	ENSPTIG00000000844	SF3A1	100	99.352	Panthera_tigris_altaica
ENSMLUG00000002139	SF3A1	100	98.739	ENSPTRG00000014240	SF3A1	100	98.739	Pan_troglodytes
ENSMLUG00000002139	SF3A1	100	98.991	ENSPANG00000020772	SF3A1	100	98.991	Papio_anubis
ENSMLUG00000002139	SF3A1	83	94.505	ENSPSIG00000012803	SF3A1	96	94.539	Pelodiscus_sinensis
ENSMLUG00000002139	SF3A1	96	84.293	ENSPMGG00000023096	sf3a1	100	84.293	Periophthalmus_magnuspinnatus
ENSMLUG00000002139	SF3A1	100	98.739	ENSPEMG00000009494	Sf3a1	100	98.739	Peromyscus_maniculatus_bairdii
ENSMLUG00000002139	SF3A1	69	77.677	ENSPMAG00000007139	-	90	78.879	Petromyzon_marinus
ENSMLUG00000002139	SF3A1	100	97.856	ENSPCIG00000022692	SF3A1	100	97.856	Phascolarctos_cinereus
ENSMLUG00000002139	SF3A1	100	75.126	ENSPFOG00000016768	sf3a1	93	78.776	Poecilia_formosa
ENSMLUG00000002139	SF3A1	100	83.396	ENSPLAG00000017268	sf3a1	97	84.967	Poecilia_latipinna
ENSMLUG00000002139	SF3A1	84	85.843	ENSPMEG00000019811	sf3a1	98	85.090	Poecilia_mexicana
ENSMLUG00000002139	SF3A1	100	83.522	ENSPREG00000010347	sf3a1	97	85.359	Poecilia_reticulata
ENSMLUG00000002139	SF3A1	100	98.991	ENSPPYG00000011707	SF3A1	100	98.991	Pongo_abelii
ENSMLUG00000002139	SF3A1	57	98.585	ENSPCAG00000003266	SF3A1	57	98.585	Procavia_capensis
ENSMLUG00000002139	SF3A1	100	99.117	ENSPCOG00000026630	SF3A1	100	99.117	Propithecus_coquereli
ENSMLUG00000002139	SF3A1	100	94.956	ENSPVAG00000017719	SF3A1	94	98.389	Pteropus_vampyrus
ENSMLUG00000002139	SF3A1	100	84.383	ENSPNYG00000018706	sf3a1	99	85.275	Pundamilia_nyererei
ENSMLUG00000002139	SF3A1	98	83.333	ENSPNAG00000003721	sf3a1	99	84.596	Pygocentrus_nattereri
ENSMLUG00000002139	SF3A1	100	98.361	ENSRNOG00000005218	Sf3a1	100	98.361	Rattus_norvegicus
ENSMLUG00000002139	SF3A1	100	98.991	ENSRBIG00000032167	SF3A1	100	98.991	Rhinopithecus_bieti
ENSMLUG00000002139	SF3A1	100	98.991	ENSRROG00000044908	SF3A1	100	98.991	Rhinopithecus_roxellana
ENSMLUG00000002139	SF3A1	97	95.090	ENSSBOG00000021960	SF3A1	100	99.409	Saimiri_boliviensis_boliviensis
ENSMLUG00000002139	SF3A1	99	93.671	ENSSHAG00000003666	SF3A1	98	95.343	Sarcophilus_harrisii
ENSMLUG00000002139	SF3A1	100	83.500	ENSSFOG00015004579	sf3a1	99	85.256	Scleropages_formosus
ENSMLUG00000002139	SF3A1	100	81.384	ENSSMAG00000004275	sf3a1	97	82.876	Scophthalmus_maximus
ENSMLUG00000002139	SF3A1	100	83.774	ENSSDUG00000022219	sf3a1	97	85.490	Seriola_dumerili
ENSMLUG00000002139	SF3A1	100	83.774	ENSSLDG00000012642	sf3a1	97	85.490	Seriola_lalandi_dorsalis
ENSMLUG00000002139	SF3A1	97	96.114	ENSSARG00000005960	SF3A1	100	96.114	Sorex_araneus
ENSMLUG00000002139	SF3A1	96	92.098	ENSSPUG00000018863	SF3A1	100	91.667	Sphenodon_punctatus
ENSMLUG00000002139	SF3A1	100	84.528	ENSSPAG00000011856	sf3a1	99	85.161	Stegastes_partitus
ENSMLUG00000002139	SF3A1	100	99.243	ENSSSCG00000010002	SF3A1	100	99.243	Sus_scrofa
ENSMLUG00000002139	SF3A1	95	94.195	ENSTGUG00000010547	SF3A1	99	93.872	Taeniopygia_guttata
ENSMLUG00000002139	SF3A1	100	81.384	ENSTRUG00000006118	sf3a1	97	82.222	Takifugu_rubripes
ENSMLUG00000002139	SF3A1	64	81.413	ENSTNIG00000005713	sf3a1	89	86.607	Tetraodon_nigroviridis
ENSMLUG00000002139	SF3A1	100	91.677	ENSTBEG00000012771	SF3A1	100	91.677	Tupaia_belangeri
ENSMLUG00000002139	SF3A1	100	98.992	ENSTTRG00000001535	SF3A1	100	98.992	Tursiops_truncatus
ENSMLUG00000002139	SF3A1	99	98.094	ENSUAMG00000006750	SF3A1	99	98.094	Ursus_americanus
ENSMLUG00000002139	SF3A1	99	98.087	ENSUMAG00000016665	SF3A1	99	98.087	Ursus_maritimus
ENSMLUG00000002139	SF3A1	100	99.117	ENSVVUG00000003075	SF3A1	100	99.117	Vulpes_vulpes
ENSMLUG00000002139	SF3A1	100	85.822	ENSXETG00000016144	sf3a1	100	85.194	Xenopus_tropicalis
ENSMLUG00000002139	SF3A1	100	82.767	ENSXCOG00000015653	sf3a1	99	83.055	Xiphophorus_couchianus
ENSMLUG00000002139	SF3A1	100	82.893	ENSXMAG00000002753	sf3a1	99	83.184	Xiphophorus_maculatus