EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMLUG00000003734 (Gene tree)
Gene ID: 102420947
Gene Symbol: LSM1
Alias: CASM|YJL124C
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Myotis_lucifugus
Status: putative
Strand: Minus strand
Length: 10745 bases
Position: chrGL429793:8078186-8088930
Accession: 102420947
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMLUP00000003402	LSM	PF01423.22	2.4e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMLUT00000003734	LSM1-201	402	XM_006086237	ENSMLUP00000003402	133 (aa)	XP_006086299	G1P0U6

Gene Model

Click here to download ENSMLUG00000003734's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMLUG00000003734's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMLUG00000003734	LSM1	65	34.091	ENSMLUG00000006837	-	92	34.091
ENSMLUG00000003734	LSM1	65	32.955	ENSMLUG00000027762	-	92	32.955

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMLUG00000003734	LSM1	100	99.248	ENSG00000175324	LSM1	100	99.248	Homo_sapiens
ENSMLUG00000003734	LSM1	100	85.714	ENSAPOG00000010833	lsm1	100	85.714	Acanthochromis_polyacanthus
ENSMLUG00000003734	LSM1	100	99.248	ENSAMEG00000011141	LSM1	100	99.248	Ailuropoda_melanoleuca
ENSMLUG00000003734	LSM1	58	92.208	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSMLUG00000003734	LSM1	100	85.714	ENSAOCG00000017997	-	100	85.714	Amphiprion_ocellaris
ENSMLUG00000003734	LSM1	100	85.714	ENSAOCG00000017096	lsm1	100	85.714	Amphiprion_ocellaris
ENSMLUG00000003734	LSM1	100	85.714	ENSAPEG00000011669	lsm1	100	85.714	Amphiprion_percula
ENSMLUG00000003734	LSM1	100	84.211	ENSATEG00000022266	lsm1	100	84.211	Anabas_testudineus
ENSMLUG00000003734	LSM1	100	99.248	ENSANAG00000027785	LSM1	100	99.248	Aotus_nancymaae
ENSMLUG00000003734	LSM1	100	84.211	ENSACLG00000011400	lsm1	100	84.211	Astatotilapia_calliptera
ENSMLUG00000003734	LSM1	100	86.466	ENSAMXG00000005441	lsm1	100	86.466	Astyanax_mexicanus
ENSMLUG00000003734	LSM1	100	98.496	ENSBTAG00000001612	LSM1	100	98.496	Bos_taurus
ENSMLUG00000003734	LSM1	87	52.542	WBGene00003076	lsm-1	90	52.542	Caenorhabditis_elegans
ENSMLUG00000003734	LSM1	100	98.496	ENSCJAG00000048015	LSM1	100	98.496	Callithrix_jacchus
ENSMLUG00000003734	LSM1	100	99.248	ENSCAFG00000006113	LSM1	100	99.248	Canis_familiaris
ENSMLUG00000003734	LSM1	100	99.248	ENSCAFG00020001822	LSM1	100	99.248	Canis_lupus_dingo
ENSMLUG00000003734	LSM1	100	99.248	ENSCHIG00000013194	LSM1	100	99.248	Capra_hircus
ENSMLUG00000003734	LSM1	100	99.248	ENSTSYG00000010394	LSM1	100	99.248	Carlito_syrichta
ENSMLUG00000003734	LSM1	100	99.248	ENSCPOG00000032671	LSM1	100	99.248	Cavia_porcellus
ENSMLUG00000003734	LSM1	100	99.248	ENSCCAG00000037171	LSM1	100	99.248	Cebus_capucinus
ENSMLUG00000003734	LSM1	100	99.248	ENSCATG00000020377	LSM1	100	99.248	Cercocebus_atys
ENSMLUG00000003734	LSM1	100	97.744	ENSCLAG00000001137	LSM1	100	97.744	Chinchilla_lanigera
ENSMLUG00000003734	LSM1	100	99.248	ENSCSAG00000015485	LSM1	100	99.248	Chlorocebus_sabaeus
ENSMLUG00000003734	LSM1	100	98.496	ENSCHOG00000006030	LSM1	100	98.496	Choloepus_hoffmanni
ENSMLUG00000003734	LSM1	95	88.976	ENSCPBG00000006569	LSM1	86	88.976	Chrysemys_picta_bellii
ENSMLUG00000003734	LSM1	99	67.424	ENSCING00000013536	-	99	67.424	Ciona_intestinalis
ENSMLUG00000003734	LSM1	100	99.248	ENSCANG00000019173	LSM1	100	99.248	Colobus_angolensis_palliatus
ENSMLUG00000003734	LSM1	100	98.496	ENSCGRG00001024560	-	100	98.496	Cricetulus_griseus_chok1gshd
ENSMLUG00000003734	LSM1	80	81.081	ENSCGRG00001002259	-	97	81.081	Cricetulus_griseus_chok1gshd
ENSMLUG00000003734	LSM1	80	81.081	ENSCGRG00000013603	-	97	81.081	Cricetulus_griseus_crigri
ENSMLUG00000003734	LSM1	100	98.496	ENSCGRG00000006554	-	100	98.496	Cricetulus_griseus_crigri
ENSMLUG00000003734	LSM1	100	82.707	ENSCSEG00000008319	lsm1	92	82.707	Cynoglossus_semilaevis
ENSMLUG00000003734	LSM1	100	83.459	ENSCSEG00000010570	lsm1	92	83.459	Cynoglossus_semilaevis
ENSMLUG00000003734	LSM1	100	83.459	ENSCVAG00000003871	lsm1	100	83.459	Cyprinodon_variegatus
ENSMLUG00000003734	LSM1	100	85.714	ENSDARG00000043177	lsm1	100	85.714	Danio_rerio
ENSMLUG00000003734	LSM1	100	99.248	ENSDNOG00000046387	-	100	99.248	Dasypus_novemcinctus
ENSMLUG00000003734	LSM1	89	78.992	ENSDNOG00000046620	-	100	78.992	Dasypus_novemcinctus
ENSMLUG00000003734	LSM1	100	98.496	ENSDNOG00000032911	-	100	98.496	Dasypus_novemcinctus
ENSMLUG00000003734	LSM1	100	93.233	ENSDNOG00000030989	-	100	93.233	Dasypus_novemcinctus
ENSMLUG00000003734	LSM1	100	99.248	ENSDORG00000028172	Lsm1	100	99.248	Dipodomys_ordii
ENSMLUG00000003734	LSM1	93	63.710	FBgn0261067	LSm1	91	63.710	Drosophila_melanogaster
ENSMLUG00000003734	LSM1	100	97.744	ENSEASG00005016677	LSM1	100	97.744	Equus_asinus_asinus
ENSMLUG00000003734	LSM1	100	97.744	ENSECAG00000010461	LSM1	100	97.744	Equus_caballus
ENSMLUG00000003734	LSM1	100	69.925	ENSEEUG00000015181	LSM1	100	69.925	Erinaceus_europaeus
ENSMLUG00000003734	LSM1	100	83.459	ENSELUG00000023374	lsm1	100	83.459	Esox_lucius
ENSMLUG00000003734	LSM1	100	86.466	ENSELUG00000002322	lsm1	100	86.466	Esox_lucius
ENSMLUG00000003734	LSM1	100	99.248	ENSFCAG00000039335	LSM1	100	99.248	Felis_catus
ENSMLUG00000003734	LSM1	89	94.915	ENSFALG00000006723	LSM1	100	94.915	Ficedula_albicollis
ENSMLUG00000003734	LSM1	100	99.248	ENSFDAG00000007658	LSM1	100	99.248	Fukomys_damarensis
ENSMLUG00000003734	LSM1	100	83.459	ENSFHEG00000009556	lsm1	100	83.459	Fundulus_heteroclitus
ENSMLUG00000003734	LSM1	100	83.459	ENSGMOG00000016651	lsm1	98	83.459	Gadus_morhua
ENSMLUG00000003734	LSM1	100	93.233	ENSGALG00000003245	LSM1	100	93.233	Gallus_gallus
ENSMLUG00000003734	LSM1	100	83.459	ENSGAFG00000011355	lsm1	100	83.459	Gambusia_affinis
ENSMLUG00000003734	LSM1	100	84.211	ENSGACG00000011763	lsm1	98	84.211	Gasterosteus_aculeatus
ENSMLUG00000003734	LSM1	100	95.489	ENSGAGG00000024065	LSM1	100	95.489	Gopherus_agassizii
ENSMLUG00000003734	LSM1	100	99.248	ENSGGOG00000022658	LSM1	100	99.248	Gorilla_gorilla
ENSMLUG00000003734	LSM1	100	84.211	ENSHBUG00000010897	lsm1	100	84.211	Haplochromis_burtoni
ENSMLUG00000003734	LSM1	100	99.248	ENSHGLG00000005711	LSM1	100	99.248	Heterocephalus_glaber_female
ENSMLUG00000003734	LSM1	100	78.947	ENSHGLG00000017574	-	100	78.947	Heterocephalus_glaber_female
ENSMLUG00000003734	LSM1	100	99.248	ENSHGLG00100017660	LSM1	100	99.248	Heterocephalus_glaber_male
ENSMLUG00000003734	LSM1	100	78.947	ENSHGLG00100012152	-	100	78.947	Heterocephalus_glaber_male
ENSMLUG00000003734	LSM1	100	84.211	ENSHCOG00000017233	lsm1	100	84.211	Hippocampus_comes
ENSMLUG00000003734	LSM1	100	84.962	ENSIPUG00000002312	LSM1	100	84.962	Ictalurus_punctatus
ENSMLUG00000003734	LSM1	58	100.000	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSMLUG00000003734	LSM1	100	97.744	ENSJJAG00000014605	-	100	97.744	Jaculus_jaculus
ENSMLUG00000003734	LSM1	100	84.211	ENSKMAG00000003016	lsm1	100	84.211	Kryptolebias_marmoratus
ENSMLUG00000003734	LSM1	100	84.211	ENSLBEG00000022352	lsm1	100	84.211	Labrus_bergylta
ENSMLUG00000003734	LSM1	89	89.831	ENSLACG00000010947	LSM1	98	89.831	Latimeria_chalumnae
ENSMLUG00000003734	LSM1	100	93.985	ENSLOCG00000015149	lsm1	100	93.985	Lepisosteus_oculatus
ENSMLUG00000003734	LSM1	100	99.248	ENSLAFG00000003534	LSM1	100	99.248	Loxodonta_africana
ENSMLUG00000003734	LSM1	100	99.248	ENSMFAG00000032661	LSM1	100	99.248	Macaca_fascicularis
ENSMLUG00000003734	LSM1	100	99.248	ENSMLEG00000034535	LSM1	100	99.248	Mandrillus_leucophaeus
ENSMLUG00000003734	LSM1	100	84.211	ENSMAMG00000007464	lsm1	100	84.211	Mastacembelus_armatus
ENSMLUG00000003734	LSM1	100	84.211	ENSMZEG00005010321	lsm1	100	84.211	Maylandia_zebra
ENSMLUG00000003734	LSM1	100	93.233	ENSMGAG00000002125	LSM1	100	93.233	Meleagris_gallopavo
ENSMLUG00000003734	LSM1	100	98.496	ENSMICG00000030726	LSM1	100	98.496	Microcebus_murinus
ENSMLUG00000003734	LSM1	100	98.496	ENSMOCG00000022817	Lsm1	100	98.496	Microtus_ochrogaster
ENSMLUG00000003734	LSM1	100	84.962	ENSMMOG00000015466	lsm1	100	84.962	Mola_mola
ENSMLUG00000003734	LSM1	100	96.992	ENSMODG00000010732	-	100	96.992	Monodelphis_domestica
ENSMLUG00000003734	LSM1	58	92.208	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSMLUG00000003734	LSM1	100	96.992	MGP_CAROLIEiJ_G0030930	Lsm1	100	96.992	Mus_caroli
ENSMLUG00000003734	LSM1	100	96.992	ENSMUSG00000037296	Lsm1	100	96.992	Mus_musculus
ENSMLUG00000003734	LSM1	100	96.992	MGP_PahariEiJ_G0021400	Lsm1	100	96.992	Mus_pahari
ENSMLUG00000003734	LSM1	100	96.992	MGP_SPRETEiJ_G0032049	Lsm1	100	96.992	Mus_spretus
ENSMLUG00000003734	LSM1	100	98.496	ENSMPUG00000009883	LSM1	100	98.496	Mustela_putorius_furo
ENSMLUG00000003734	LSM1	100	98.496	ENSNGAG00000003753	Lsm1	100	98.496	Nannospalax_galili
ENSMLUG00000003734	LSM1	58	92.208	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSMLUG00000003734	LSM1	100	99.248	ENSNLEG00000029390	LSM1	100	99.248	Nomascus_leucogenys
ENSMLUG00000003734	LSM1	100	96.992	ENSMEUG00000014077	LSM1	100	96.992	Notamacropus_eugenii
ENSMLUG00000003734	LSM1	88	93.162	ENSOPRG00000000333	LSM1	100	93.162	Ochotona_princeps
ENSMLUG00000003734	LSM1	100	99.248	ENSODEG00000004834	LSM1	100	99.248	Octodon_degus
ENSMLUG00000003734	LSM1	100	84.211	ENSONIG00000010782	lsm1	100	84.211	Oreochromis_niloticus
ENSMLUG00000003734	LSM1	100	96.241	ENSOANG00000003256	LSM1	100	96.241	Ornithorhynchus_anatinus
ENSMLUG00000003734	LSM1	100	99.248	ENSOCUG00000015399	LSM1	100	99.248	Oryctolagus_cuniculus
ENSMLUG00000003734	LSM1	100	85.714	ENSORLG00000030288	lsm1	100	85.714	Oryzias_latipes
ENSMLUG00000003734	LSM1	100	84.211	ENSORLG00020006213	-	86	84.211	Oryzias_latipes_hni
ENSMLUG00000003734	LSM1	100	85.714	ENSORLG00020003941	lsm1	100	85.714	Oryzias_latipes_hni
ENSMLUG00000003734	LSM1	100	85.714	ENSORLG00015018350	lsm1	100	85.714	Oryzias_latipes_hsok
ENSMLUG00000003734	LSM1	100	84.211	ENSOMEG00000012454	lsm1	100	84.211	Oryzias_melastigma
ENSMLUG00000003734	LSM1	100	99.248	ENSOGAG00000015161	LSM1	100	99.248	Otolemur_garnettii
ENSMLUG00000003734	LSM1	100	99.248	ENSOARG00000001317	LSM1	100	99.248	Ovis_aries
ENSMLUG00000003734	LSM1	100	99.248	ENSPPAG00000032279	LSM1	100	99.248	Pan_paniscus
ENSMLUG00000003734	LSM1	100	99.248	ENSPPRG00000014172	-	100	99.248	Panthera_pardus
ENSMLUG00000003734	LSM1	100	99.248	ENSPTIG00000010289	LSM1	100	99.248	Panthera_tigris_altaica
ENSMLUG00000003734	LSM1	100	99.248	ENSPTRG00000020169	LSM1	100	99.248	Pan_troglodytes
ENSMLUG00000003734	LSM1	100	99.248	ENSPANG00000008814	LSM1	100	99.248	Papio_anubis
ENSMLUG00000003734	LSM1	100	90.226	ENSPKIG00000001839	lsm1	100	90.226	Paramormyrops_kingsleyae
ENSMLUG00000003734	LSM1	100	81.955	ENSPKIG00000019409	LSM1	99	81.955	Paramormyrops_kingsleyae
ENSMLUG00000003734	LSM1	98	89.231	ENSPSIG00000012563	LSM1	99	89.231	Pelodiscus_sinensis
ENSMLUG00000003734	LSM1	58	92.208	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSMLUG00000003734	LSM1	85	79.646	ENSPMAG00000002671	lsm1	100	79.646	Petromyzon_marinus
ENSMLUG00000003734	LSM1	100	95.489	ENSPCIG00000008880	LSM1	100	95.489	Phascolarctos_cinereus
ENSMLUG00000003734	LSM1	100	83.459	ENSPFOG00000016029	lsm1	100	83.459	Poecilia_formosa
ENSMLUG00000003734	LSM1	100	83.459	ENSPLAG00000007879	lsm1	100	83.459	Poecilia_latipinna
ENSMLUG00000003734	LSM1	100	83.459	ENSPMEG00000023550	lsm1	100	83.459	Poecilia_mexicana
ENSMLUG00000003734	LSM1	100	83.459	ENSPREG00000009574	lsm1	100	83.459	Poecilia_reticulata
ENSMLUG00000003734	LSM1	100	99.248	ENSPPYG00000018521	LSM1	100	99.248	Pongo_abelii
ENSMLUG00000003734	LSM1	100	99.248	ENSPCOG00000020901	-	100	99.248	Propithecus_coquereli
ENSMLUG00000003734	LSM1	100	99.248	ENSPVAG00000006016	LSM1	100	99.248	Pteropus_vampyrus
ENSMLUG00000003734	LSM1	100	84.211	ENSPNYG00000018067	lsm1	100	84.211	Pundamilia_nyererei
ENSMLUG00000003734	LSM1	100	85.714	ENSPNAG00000013707	lsm1	100	85.714	Pygocentrus_nattereri
ENSMLUG00000003734	LSM1	100	96.992	ENSRNOG00000015375	Lsm1	100	96.992	Rattus_norvegicus
ENSMLUG00000003734	LSM1	100	99.248	ENSRBIG00000027449	LSM1	100	99.248	Rhinopithecus_bieti
ENSMLUG00000003734	LSM1	100	99.248	ENSRROG00000036074	LSM1	100	99.248	Rhinopithecus_roxellana
ENSMLUG00000003734	LSM1	100	96.992	ENSSHAG00000017260	LSM1	100	96.992	Sarcophilus_harrisii
ENSMLUG00000003734	LSM1	100	90.977	ENSSFOG00015019528	lsm1	100	90.977	Scleropages_formosus
ENSMLUG00000003734	LSM1	100	84.211	ENSSMAG00000004930	lsm1	100	84.211	Scophthalmus_maximus
ENSMLUG00000003734	LSM1	100	84.211	ENSSDUG00000021823	lsm1	100	84.211	Seriola_dumerili
ENSMLUG00000003734	LSM1	100	84.211	ENSSLDG00000012154	lsm1	100	84.211	Seriola_lalandi_dorsalis
ENSMLUG00000003734	LSM1	100	95.489	ENSSPUG00000014878	LSM1	100	95.489	Sphenodon_punctatus
ENSMLUG00000003734	LSM1	100	84.962	ENSSPAG00000020548	lsm1	100	84.962	Stegastes_partitus
ENSMLUG00000003734	LSM1	100	97.744	ENSSSCG00000039058	LSM1	100	97.744	Sus_scrofa
ENSMLUG00000003734	LSM1	100	94.737	ENSTGUG00000004793	LSM1	100	94.737	Taeniopygia_guttata
ENSMLUG00000003734	LSM1	100	86.466	ENSTRUG00000025239	lsm1	100	86.466	Takifugu_rubripes
ENSMLUG00000003734	LSM1	100	86.466	ENSTNIG00000004055	lsm1	100	86.466	Tetraodon_nigroviridis
ENSMLUG00000003734	LSM1	88	96.581	ENSTBEG00000015884	LSM1	100	96.581	Tupaia_belangeri
ENSMLUG00000003734	LSM1	100	99.248	ENSTTRG00000004482	LSM1	100	99.248	Tursiops_truncatus
ENSMLUG00000003734	LSM1	100	99.248	ENSUAMG00000004103	LSM1	100	99.248	Ursus_americanus
ENSMLUG00000003734	LSM1	100	99.248	ENSUMAG00000009132	LSM1	100	99.248	Ursus_maritimus
ENSMLUG00000003734	LSM1	58	98.701	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSMLUG00000003734	LSM1	65	69.767	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSMLUG00000003734	LSM1	100	99.248	ENSVVUG00000020191	LSM1	100	99.248	Vulpes_vulpes
ENSMLUG00000003734	LSM1	100	91.971	ENSXETG00000009004	lsm1	100	91.971	Xenopus_tropicalis
ENSMLUG00000003734	LSM1	100	82.707	ENSXCOG00000015631	lsm1	100	82.707	Xiphophorus_couchianus
ENSMLUG00000003734	LSM1	100	82.707	ENSXMAG00000026637	lsm1	100	82.707	Xiphophorus_maculatus