EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMLUG00000005739 (Gene tree)
Gene ID: 102434319
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Myotis_lucifugus
Status: putative
Strand: Plus strand
Length: 211797 bases
Position: chrGL430029:481531-693327
Accession: 17809
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMLUP00000005253	EST1	PF10374.9	2.6e-15	1	1
ENSMLUP00000005253	EST1_DNA_bind	PF10373.9	1.3e-61	1	1
ENSMLUP00000005253	PIN_4	PF13638.6	7.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMLUT00000005748	SMG6-201	4233	XM_006099169	ENSMLUP00000005253	1410 (aa)	-	G1P5G6

Gene Model

Click here to download ENSMLUG00000005739's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMLUG00000005739's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMLUG00000005739	SMG6	100	92.248	ENSG00000070366	SMG6	100	97.652	Homo_sapiens
ENSMLUG00000005739	SMG6	83	55.433	ENSAPOG00000019448	smg6	74	55.582	Acanthochromis_polyacanthus
ENSMLUG00000005739	SMG6	100	94.562	ENSAMEG00000007632	SMG6	100	94.562	Ailuropoda_melanoleuca
ENSMLUG00000005739	SMG6	76	58.457	ENSACIG00000012997	smg6	79	55.467	Amphilophus_citrinellus
ENSMLUG00000005739	SMG6	83	55.249	ENSAPEG00000019101	smg6	74	55.399	Amphiprion_percula
ENSMLUG00000005739	SMG6	83	55.294	ENSATEG00000006483	smg6	73	55.339	Anabas_testudineus
ENSMLUG00000005739	SMG6	87	57.188	ENSACAG00000011783	SMG6	99	58.768	Anolis_carolinensis
ENSMLUG00000005739	SMG6	100	93.164	ENSANAG00000035760	SMG6	100	93.164	Aotus_nancymaae
ENSMLUG00000005739	SMG6	72	59.392	ENSACLG00000005288	smg6	84	53.881	Astatotilapia_calliptera
ENSMLUG00000005739	SMG6	72	62.175	ENSAMXG00000017326	smg6	98	51.681	Astyanax_mexicanus
ENSMLUG00000005739	SMG6	100	93.984	ENSBTAG00000000267	SMG6	100	93.984	Bos_taurus
ENSMLUG00000005739	SMG6	100	92.600	ENSCJAG00000001820	SMG6	100	92.600	Callithrix_jacchus
ENSMLUG00000005739	SMG6	100	94.551	ENSCAFG00000019260	SMG6	100	94.551	Canis_familiaris
ENSMLUG00000005739	SMG6	100	94.551	ENSCAFG00020009770	SMG6	100	94.551	Canis_lupus_dingo
ENSMLUG00000005739	SMG6	100	93.347	ENSCHIG00000021998	SMG6	100	93.347	Capra_hircus
ENSMLUG00000005739	SMG6	100	92.600	ENSTSYG00000003406	SMG6	100	97.260	Carlito_syrichta
ENSMLUG00000005739	SMG6	98	77.289	ENSCAPG00000016197	SMG6	99	82.670	Cavia_aperea
ENSMLUG00000005739	SMG6	100	90.423	ENSCPOG00000014878	SMG6	100	90.423	Cavia_porcellus
ENSMLUG00000005739	SMG6	100	93.305	ENSCCAG00000035801	SMG6	100	93.305	Cebus_capucinus
ENSMLUG00000005739	SMG6	100	92.530	ENSCATG00000031956	SMG6	100	92.530	Cercocebus_atys
ENSMLUG00000005739	SMG6	100	92.248	ENSCLAG00000006748	SMG6	100	92.248	Chinchilla_lanigera
ENSMLUG00000005739	SMG6	100	92.953	ENSCSAG00000013800	SMG6	100	92.953	Chlorocebus_sabaeus
ENSMLUG00000005739	SMG6	57	97.015	ENSCHOG00000005024	-	73	97.015	Choloepus_hoffmanni
ENSMLUG00000005739	SMG6	100	72.095	ENSCPBG00000020369	SMG6	100	72.651	Chrysemys_picta_bellii
ENSMLUG00000005739	SMG6	98	93.017	ENSCANG00000031764	SMG6	100	97.260	Colobus_angolensis_palliatus
ENSMLUG00000005739	SMG6	55	87.291	ENSCGRG00001019595	Smg6	100	87.291	Cricetulus_griseus_chok1gshd
ENSMLUG00000005739	SMG6	98	84.910	ENSCGRG00000007782	Smg6	99	85.054	Cricetulus_griseus_crigri
ENSMLUG00000005739	SMG6	88	53.476	ENSCSEG00000012757	smg6	81	53.323	Cynoglossus_semilaevis
ENSMLUG00000005739	SMG6	72	58.009	ENSCVAG00000012789	smg6	86	54.209	Cyprinodon_variegatus
ENSMLUG00000005739	SMG6	99	55.137	ENSDARG00000100481	smg6	92	56.151	Danio_rerio
ENSMLUG00000005739	SMG6	100	92.530	ENSDNOG00000048283	SMG6	100	92.530	Dasypus_novemcinctus
ENSMLUG00000005739	SMG6	100	88.982	ENSDORG00000016614	Smg6	94	97.748	Dipodomys_ordii
ENSMLUG00000005739	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSMLUG00000005739	SMG6	74	50.097	ENSEBUG00000005059	smg6	73	48.555	Eptatretus_burgeri
ENSMLUG00000005739	SMG6	99	95.110	ENSEASG00005009318	SMG6	99	95.110	Equus_asinus_asinus
ENSMLUG00000005739	SMG6	99	94.826	ENSECAG00000006519	SMG6	99	94.826	Equus_caballus
ENSMLUG00000005739	SMG6	100	83.723	ENSEEUG00000003493	SMG6	100	83.723	Erinaceus_europaeus
ENSMLUG00000005739	SMG6	72	60.240	ENSELUG00000005934	smg6	69	55.428	Esox_lucius
ENSMLUG00000005739	SMG6	100	95.612	ENSFCAG00000028817	SMG6	100	95.612	Felis_catus
ENSMLUG00000005739	SMG6	98	72.409	ENSFALG00000006538	SMG6	99	72.480	Ficedula_albicollis
ENSMLUG00000005739	SMG6	100	92.459	ENSFDAG00000015106	SMG6	100	92.459	Fukomys_damarensis
ENSMLUG00000005739	SMG6	83	53.333	ENSFHEG00000013282	smg6	75	53.762	Fundulus_heteroclitus
ENSMLUG00000005739	SMG6	53	68.224	ENSGMOG00000019077	smg6	68	68.224	Gadus_morhua
ENSMLUG00000005739	SMG6	100	71.875	ENSGALG00000003108	SMG6	98	71.875	Gallus_gallus
ENSMLUG00000005739	SMG6	83	54.265	ENSGAFG00000000379	smg6	74	54.538	Gambusia_affinis
ENSMLUG00000005739	SMG6	91	53.949	ENSGACG00000020521	smg6	99	53.749	Gasterosteus_aculeatus
ENSMLUG00000005739	SMG6	98	72.091	ENSGAGG00000025617	SMG6	99	72.662	Gopherus_agassizii
ENSMLUG00000005739	SMG6	100	93.094	ENSGGOG00000017156	SMG6	100	93.094	Gorilla_gorilla
ENSMLUG00000005739	SMG6	88	52.889	ENSHBUG00000021311	smg6	78	54.232	Haplochromis_burtoni
ENSMLUG00000005739	SMG6	100	91.907	ENSHGLG00000012882	SMG6	100	91.907	Heterocephalus_glaber_female
ENSMLUG00000005739	SMG6	100	91.977	ENSHGLG00100017815	SMG6	100	91.977	Heterocephalus_glaber_male
ENSMLUG00000005739	SMG6	77	56.487	ENSHCOG00000008761	smg6	97	53.740	Hippocampus_comes
ENSMLUG00000005739	SMG6	83	55.118	ENSIPUG00000012493	smg6	75	54.588	Ictalurus_punctatus
ENSMLUG00000005739	SMG6	100	93.658	ENSSTOG00000028127	SMG6	100	93.658	Ictidomys_tridecemlineatus
ENSMLUG00000005739	SMG6	79	88.393	ENSJJAG00000015367	Smg6	95	86.470	Jaculus_jaculus
ENSMLUG00000005739	SMG6	73	59.156	ENSKMAG00000000279	smg6	76	53.988	Kryptolebias_marmoratus
ENSMLUG00000005739	SMG6	86	52.834	ENSLBEG00000002184	smg6	76	53.233	Labrus_bergylta
ENSMLUG00000005739	SMG6	55	58.416	ENSLACG00000000806	-	98	59.852	Latimeria_chalumnae
ENSMLUG00000005739	SMG6	100	92.459	ENSLAFG00000001261	SMG6	100	92.459	Loxodonta_africana
ENSMLUG00000005739	SMG6	100	93.164	ENSMFAG00000003394	SMG6	100	93.164	Macaca_fascicularis
ENSMLUG00000005739	SMG6	100	93.094	ENSMMUG00000023161	SMG6	100	93.094	Macaca_mulatta
ENSMLUG00000005739	SMG6	100	88.616	ENSMNEG00000044592	SMG6	100	88.616	Macaca_nemestrina
ENSMLUG00000005739	SMG6	93	97.368	ENSMLEG00000029353	SMG6	100	97.368	Mandrillus_leucophaeus
ENSMLUG00000005739	SMG6	83	55.887	ENSMAMG00000020119	smg6	98	49.838	Mastacembelus_armatus
ENSMLUG00000005739	SMG6	72	59.412	ENSMZEG00005024736	smg6	77	53.973	Maylandia_zebra
ENSMLUG00000005739	SMG6	73	65.849	ENSMGAG00000005401	-	99	65.849	Meleagris_gallopavo
ENSMLUG00000005739	SMG6	100	94.362	ENSMICG00000012913	SMG6	100	94.362	Microcebus_murinus
ENSMLUG00000005739	SMG6	100	47.791	ENSMMOG00000010883	smg6	100	48.312	Mola_mola
ENSMLUG00000005739	SMG6	100	85.091	ENSMODG00000010622	SMG6	100	85.091	Monodelphis_domestica
ENSMLUG00000005739	SMG6	83	55.062	ENSMALG00000001106	smg6	73	55.461	Monopterus_albus
ENSMLUG00000005739	SMG6	100	90.627	MGP_CAROLIEiJ_G0016729	Smg6	100	90.627	Mus_caroli
ENSMLUG00000005739	SMG6	100	90.557	ENSMUSG00000038290	Smg6	100	90.557	Mus_musculus
ENSMLUG00000005739	SMG6	100	90.268	MGP_PahariEiJ_G0017866	Smg6	100	90.268	Mus_pahari
ENSMLUG00000005739	SMG6	100	90.486	MGP_SPRETEiJ_G0017572	Smg6	100	90.486	Mus_spretus
ENSMLUG00000005739	SMG6	100	94.409	ENSMPUG00000013046	SMG6	100	94.409	Mustela_putorius_furo
ENSMLUG00000005739	SMG6	98	90.274	ENSNGAG00000007287	Smg6	100	90.274	Nannospalax_galili
ENSMLUG00000005739	SMG6	88	52.164	ENSNBRG00000009511	smg6	85	53.403	Neolamprologus_brichardi
ENSMLUG00000005739	SMG6	98	93.357	ENSNLEG00000017171	SMG6	100	97.652	Nomascus_leucogenys
ENSMLUG00000005739	SMG6	98	81.681	ENSMEUG00000015804	SMG6	100	81.681	Notamacropus_eugenii
ENSMLUG00000005739	SMG6	62	92.760	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSMLUG00000005739	SMG6	100	85.362	ENSODEG00000008038	SMG6	100	85.362	Octodon_degus
ENSMLUG00000005739	SMG6	100	50.937	ENSONIG00000005594	smg6	100	51.944	Oreochromis_niloticus
ENSMLUG00000005739	SMG6	100	92.118	ENSOCUG00000013018	SMG6	100	92.259	Oryctolagus_cuniculus
ENSMLUG00000005739	SMG6	83	54.308	ENSORLG00000003317	smg6	74	54.925	Oryzias_latipes
ENSMLUG00000005739	SMG6	83	54.315	ENSORLG00020015343	smg6	74	54.538	Oryzias_latipes_hni
ENSMLUG00000005739	SMG6	83	54.186	ENSORLG00015020454	smg6	74	54.803	Oryzias_latipes_hsok
ENSMLUG00000005739	SMG6	83	53.828	ENSOMEG00000010838	smg6	75	54.229	Oryzias_melastigma
ENSMLUG00000005739	SMG6	100	93.239	ENSOGAG00000004483	SMG6	100	93.239	Otolemur_garnettii
ENSMLUG00000005739	SMG6	100	91.743	ENSOARG00000015076	SMG6	100	93.488	Ovis_aries
ENSMLUG00000005739	SMG6	100	93.094	ENSPPAG00000043296	SMG6	100	93.094	Pan_paniscus
ENSMLUG00000005739	SMG6	100	95.541	ENSPPRG00000014581	SMG6	100	95.541	Panthera_pardus
ENSMLUG00000005739	SMG6	98	95.876	ENSPTIG00000008925	SMG6	100	98.826	Panthera_tigris_altaica
ENSMLUG00000005739	SMG6	100	93.094	ENSPTRG00000008544	SMG6	100	97.652	Pan_troglodytes
ENSMLUG00000005739	SMG6	100	92.953	ENSPANG00000024588	SMG6	100	92.953	Papio_anubis
ENSMLUG00000005739	SMG6	89	71.036	ENSPSIG00000006660	SMG6	96	71.115	Pelodiscus_sinensis
ENSMLUG00000005739	SMG6	100	50.100	ENSPMGG00000000844	smg6	100	50.199	Periophthalmus_magnuspinnatus
ENSMLUG00000005739	SMG6	100	91.543	ENSPEMG00000020707	Smg6	100	91.543	Peromyscus_maniculatus_bairdii
ENSMLUG00000005739	SMG6	100	51.889	ENSPFOG00000012035	smg6	100	51.580	Poecilia_formosa
ENSMLUG00000005739	SMG6	83	54.553	ENSPLAG00000017660	smg6	74	54.107	Poecilia_latipinna
ENSMLUG00000005739	SMG6	83	54.466	ENSPMEG00000000258	smg6	74	54.466	Poecilia_mexicana
ENSMLUG00000005739	SMG6	83	54.358	ENSPREG00000010066	smg6	74	54.394	Poecilia_reticulata
ENSMLUG00000005739	SMG6	100	87.834	ENSPPYG00000007790	SMG6	100	87.834	Pongo_abelii
ENSMLUG00000005739	SMG6	100	88.302	ENSPCAG00000000552	SMG6	100	88.302	Procavia_capensis
ENSMLUG00000005739	SMG6	100	94.080	ENSPCOG00000020925	SMG6	100	94.080	Propithecus_coquereli
ENSMLUG00000005739	SMG6	86	91.323	ENSPVAG00000002159	SMG6	86	91.323	Pteropus_vampyrus
ENSMLUG00000005739	SMG6	88	54.370	ENSPNYG00000024151	smg6	83	55.556	Pundamilia_nyererei
ENSMLUG00000005739	SMG6	87	51.852	ENSPNAG00000015480	smg6	87	63.555	Pygocentrus_nattereri
ENSMLUG00000005739	SMG6	100	90.980	ENSRNOG00000003041	Smg6	100	90.980	Rattus_norvegicus
ENSMLUG00000005739	SMG6	100	92.741	ENSRBIG00000024746	SMG6	100	92.741	Rhinopithecus_bieti
ENSMLUG00000005739	SMG6	100	92.812	ENSRROG00000030423	SMG6	100	96.869	Rhinopithecus_roxellana
ENSMLUG00000005739	SMG6	100	92.882	ENSSBOG00000022518	SMG6	100	91.191	Saimiri_boliviensis_boliviensis
ENSMLUG00000005739	SMG6	98	85.193	ENSSHAG00000010045	SMG6	98	85.193	Sarcophilus_harrisii
ENSMLUG00000005739	SMG6	72	62.605	ENSSFOG00015005436	smg6	70	57.334	Scleropages_formosus
ENSMLUG00000005739	SMG6	83	55.373	ENSSMAG00000019777	smg6	73	54.839	Scophthalmus_maximus
ENSMLUG00000005739	SMG6	89	53.363	ENSSDUG00000016412	smg6	79	52.693	Seriola_dumerili
ENSMLUG00000005739	SMG6	86	52.108	ENSSLDG00000020747	smg6	83	51.732	Seriola_lalandi_dorsalis
ENSMLUG00000005739	SMG6	99	70.217	ENSSPUG00000007152	SMG6	99	70.147	Sphenodon_punctatus
ENSMLUG00000005739	SMG6	83	54.874	ENSSPAG00000015633	smg6	74	55.189	Stegastes_partitus
ENSMLUG00000005739	SMG6	100	93.847	ENSSSCG00000017826	SMG6	100	93.847	Sus_scrofa
ENSMLUG00000005739	SMG6	100	72.312	ENSTGUG00000005836	SMG6	100	72.382	Taeniopygia_guttata
ENSMLUG00000005739	SMG6	100	48.098	ENSTRUG00000000358	smg6	100	48.603	Takifugu_rubripes
ENSMLUG00000005739	SMG6	100	50.000	ENSTNIG00000016164	smg6	100	50.328	Tetraodon_nigroviridis
ENSMLUG00000005739	SMG6	100	88.513	ENSTBEG00000011424	SMG6	100	88.513	Tupaia_belangeri
ENSMLUG00000005739	SMG6	91	91.818	ENSTTRG00000001175	SMG6	91	91.818	Tursiops_truncatus
ENSMLUG00000005739	SMG6	100	94.845	ENSUAMG00000025152	SMG6	100	95.090	Ursus_americanus
ENSMLUG00000005739	SMG6	98	95.441	ENSUMAG00000009306	SMG6	100	95.441	Ursus_maritimus
ENSMLUG00000005739	SMG6	85	100.000	ENSVPAG00000000225	SMG6	88	100.000	Vicugna_pacos
ENSMLUG00000005739	SMG6	100	94.268	ENSVVUG00000021727	SMG6	100	94.268	Vulpes_vulpes
ENSMLUG00000005739	SMG6	98	59.688	ENSXETG00000023799	SMG6	99	59.165	Xenopus_tropicalis
ENSMLUG00000005739	SMG6	72	59.889	ENSXCOG00000009867	smg6	74	55.161	Xiphophorus_couchianus
ENSMLUG00000005739	SMG6	83	54.897	ENSXMAG00000010321	smg6	74	54.560	Xiphophorus_maculatus