EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMLUG00000008518 (Gene tree)
Gene ID: 102439570
Gene Symbol: SMG5
Alias: EST1B|KIAA1089|LPTS-RP1|LPTSRP1|RP11-54H19.7|SMG-5
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Myotis_lucifugus
Status: putative
Strand: Plus strand
Length: 23986 bases
Position: chrGL429978:1573605-1597590
Accession: 102439570
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMLUP00000007780	EST1	PF10374.9	5.6e-24	1	1
ENSMLUP00000007780	EST1_DNA_bind	PF10373.9	2.7e-42	1	2
ENSMLUP00000007780	EST1_DNA_bind	PF10373.9	2.7e-42	2	2
ENSMLUP00000007780	PIN_4	PF13638.6	1.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMLUT00000008535	SMG5-201	3057	XM_006097801	ENSMLUP00000007780	1018 (aa)	XP_006097863	G1PBN0

Gene Model

Click here to download ENSMLUG00000008518's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMLUG00000008518's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMLUG00000008518	SMG5	100	95.597	ENSG00000198952	SMG5	100	95.597	Homo_sapiens
ENSMLUG00000008518	SMG5	99	67.615	ENSAPOG00000019690	smg5	99	67.549	Acanthochromis_polyacanthus
ENSMLUG00000008518	SMG5	98	90.891	ENSAMEG00000014458	SMG5	100	90.390	Ailuropoda_melanoleuca
ENSMLUG00000008518	SMG5	99	65.288	ENSACIG00000001353	smg5	99	66.378	Amphilophus_citrinellus
ENSMLUG00000008518	SMG5	98	65.282	ENSAOCG00000019483	smg5	99	61.977	Amphiprion_ocellaris
ENSMLUG00000008518	SMG5	98	66.633	ENSAPEG00000022949	smg5	98	66.899	Amphiprion_percula
ENSMLUG00000008518	SMG5	99	66.343	ENSATEG00000005348	smg5	99	67.216	Anabas_testudineus
ENSMLUG00000008518	SMG5	98	78.307	ENSAPLG00000010263	SMG5	100	77.410	Anas_platyrhynchos
ENSMLUG00000008518	SMG5	100	93.738	ENSANAG00000032899	SMG5	100	94.618	Aotus_nancymaae
ENSMLUG00000008518	SMG5	99	65.448	ENSACLG00000009311	smg5	99	66.218	Astatotilapia_calliptera
ENSMLUG00000008518	SMG5	99	45.428	ENSBTAG00000021747	-	99	44.141	Bos_taurus
ENSMLUG00000008518	SMG5	100	93.151	ENSBTAG00000009435	SMG5	100	93.738	Bos_taurus
ENSMLUG00000008518	SMG5	100	93.933	ENSCJAG00000005684	SMG5	100	94.814	Callithrix_jacchus
ENSMLUG00000008518	SMG5	100	92.633	ENSCAFG00000016839	SMG5	100	92.633	Canis_familiaris
ENSMLUG00000008518	SMG5	100	92.633	ENSCAFG00020006061	SMG5	100	92.633	Canis_lupus_dingo
ENSMLUG00000008518	SMG5	100	92.955	ENSCHIG00000007709	SMG5	100	92.864	Capra_hircus
ENSMLUG00000008518	SMG5	99	45.231	ENSCHIG00000006323	-	99	44.031	Capra_hircus
ENSMLUG00000008518	SMG5	100	93.255	ENSTSYG00000004099	SMG5	100	93.255	Carlito_syrichta
ENSMLUG00000008518	SMG5	97	72.525	ENSCAPG00000003631	SMG5	100	73.859	Cavia_aperea
ENSMLUG00000008518	SMG5	100	92.955	ENSCPOG00000015696	SMG5	100	93.738	Cavia_porcellus
ENSMLUG00000008518	SMG5	100	95.597	ENSCCAG00000027409	SMG5	100	95.597	Cebus_capucinus
ENSMLUG00000008518	SMG5	100	95.793	ENSCATG00000030539	SMG5	100	95.793	Cercocebus_atys
ENSMLUG00000008518	SMG5	100	93.249	ENSCLAG00000003983	SMG5	100	93.933	Chinchilla_lanigera
ENSMLUG00000008518	SMG5	100	95.695	ENSCSAG00000002120	SMG5	100	95.695	Chlorocebus_sabaeus
ENSMLUG00000008518	SMG5	54	89.531	ENSCHOG00000008741	-	57	90.253	Choloepus_hoffmanni
ENSMLUG00000008518	SMG5	94	77.419	ENSCPBG00000025848	SMG5	100	77.227	Chrysemys_picta_bellii
ENSMLUG00000008518	SMG5	94	34.765	ENSCING00000008706	-	99	34.254	Ciona_intestinalis
ENSMLUG00000008518	SMG5	100	90.705	ENSCANG00000029208	SMG5	100	91.096	Colobus_angolensis_palliatus
ENSMLUG00000008518	SMG5	54	46.277	ENSCGRG00001000584	-	74	55.970	Cricetulus_griseus_chok1gshd
ENSMLUG00000008518	SMG5	100	91.675	ENSCGRG00001006336	Smg5	100	91.577	Cricetulus_griseus_chok1gshd
ENSMLUG00000008518	SMG5	98	91.775	ENSCGRG00000005111	Smg5	100	91.667	Cricetulus_griseus_crigri
ENSMLUG00000008518	SMG5	99	64.626	ENSCSEG00000014220	smg5	99	65.132	Cynoglossus_semilaevis
ENSMLUG00000008518	SMG5	99	60.624	ENSCVAG00000000529	smg5	99	61.187	Cyprinodon_variegatus
ENSMLUG00000008518	SMG5	92	36.478	ENSDNOG00000039862	-	100	35.639	Dasypus_novemcinctus
ENSMLUG00000008518	SMG5	100	89.628	ENSDNOG00000000051	SMG5	100	89.530	Dasypus_novemcinctus
ENSMLUG00000008518	SMG5	100	92.564	ENSDORG00000010382	Smg5	100	92.759	Dipodomys_ordii
ENSMLUG00000008518	SMG5	70	31.771	FBgn0019890	Smg5	65	31.959	Drosophila_melanogaster
ENSMLUG00000008518	SMG5	82	95.146	ENSETEG00000010336	SMG5	89	95.146	Echinops_telfairi
ENSMLUG00000008518	SMG5	90	47.402	ENSEBUG00000003739	smg5	98	47.352	Eptatretus_burgeri
ENSMLUG00000008518	SMG5	100	93.836	ENSEASG00005019122	SMG5	100	94.716	Equus_asinus_asinus
ENSMLUG00000008518	SMG5	100	94.031	ENSECAG00000001389	SMG5	100	94.716	Equus_caballus
ENSMLUG00000008518	SMG5	72	98.559	ENSEEUG00000012690	SMG5	74	98.559	Erinaceus_europaeus
ENSMLUG00000008518	SMG5	99	65.541	ENSELUG00000012585	smg5	99	64.286	Esox_lucius
ENSMLUG00000008518	SMG5	100	92.172	ENSFCAG00000011783	SMG5	100	92.043	Felis_catus
ENSMLUG00000008518	SMG5	58	80.960	ENSFALG00000001166	-	99	80.100	Ficedula_albicollis
ENSMLUG00000008518	SMG5	98	91.775	ENSFDAG00000017388	SMG5	100	91.775	Fukomys_damarensis
ENSMLUG00000008518	SMG5	97	61.608	ENSFHEG00000013939	smg5	95	68.357	Fundulus_heteroclitus
ENSMLUG00000008518	SMG5	99	61.681	ENSGMOG00000007310	smg5	99	61.757	Gadus_morhua
ENSMLUG00000008518	SMG5	99	76.516	ENSGALG00000029918	-	100	76.046	Gallus_gallus
ENSMLUG00000008518	SMG5	82	76.430	ENSGAFG00000021691	smg5	96	66.454	Gambusia_affinis
ENSMLUG00000008518	SMG5	99	60.936	ENSGACG00000013142	smg5	99	61.656	Gasterosteus_aculeatus
ENSMLUG00000008518	SMG5	100	78.578	ENSGAGG00000016131	SMG5	100	78.294	Gopherus_agassizii
ENSMLUG00000008518	SMG5	100	95.793	ENSGGOG00000010932	SMG5	100	95.793	Gorilla_gorilla
ENSMLUG00000008518	SMG5	99	65.355	ENSHBUG00000008654	smg5	99	65.557	Haplochromis_burtoni
ENSMLUG00000008518	SMG5	100	91.487	ENSHGLG00000019152	SMG5	100	91.487	Heterocephalus_glaber_female
ENSMLUG00000008518	SMG5	90	91.603	ENSHGLG00100015948	SMG5	99	91.603	Heterocephalus_glaber_male
ENSMLUG00000008518	SMG5	86	73.839	ENSHCOG00000010229	smg5	93	72.275	Hippocampus_comes
ENSMLUG00000008518	SMG5	92	79.433	ENSIPUG00000006624	Smg5	99	62.022	Ictalurus_punctatus
ENSMLUG00000008518	SMG5	100	94.129	ENSSTOG00000001780	SMG5	100	94.423	Ictidomys_tridecemlineatus
ENSMLUG00000008518	SMG5	100	91.406	ENSJJAG00000022763	Smg5	100	91.309	Jaculus_jaculus
ENSMLUG00000008518	SMG5	50	58.425	ENSKMAG00000014586	smg5	99	61.012	Kryptolebias_marmoratus
ENSMLUG00000008518	SMG5	99	65.990	ENSLBEG00000002145	smg5	99	66.250	Labrus_bergylta
ENSMLUG00000008518	SMG5	100	64.245	ENSLACG00000010521	SMG5	100	64.829	Latimeria_chalumnae
ENSMLUG00000008518	SMG5	96	78.873	ENSLOCG00000008380	smg5	92	78.910	Lepisosteus_oculatus
ENSMLUG00000008518	SMG5	100	92.661	ENSLAFG00000006241	SMG5	100	92.955	Loxodonta_africana
ENSMLUG00000008518	SMG5	100	95.695	ENSMFAG00000045357	SMG5	100	95.695	Macaca_fascicularis
ENSMLUG00000008518	SMG5	100	95.285	ENSMMUG00000000090	SMG5	100	95.285	Macaca_mulatta
ENSMLUG00000008518	SMG5	100	94.031	ENSMNEG00000044425	SMG5	100	94.912	Macaca_nemestrina
ENSMLUG00000008518	SMG5	100	88.109	ENSMLEG00000041192	SMG5	100	88.791	Mandrillus_leucophaeus
ENSMLUG00000008518	SMG5	99	60.749	ENSMAMG00000010683	smg5	100	61.248	Mastacembelus_armatus
ENSMLUG00000008518	SMG5	99	64.593	ENSMZEG00005015815	smg5	99	64.976	Maylandia_zebra
ENSMLUG00000008518	SMG5	63	59.276	ENSMZEG00005016543	smg5	100	58.824	Maylandia_zebra
ENSMLUG00000008518	SMG5	55	45.009	ENSMAUG00000000043	-	96	44.174	Mesocricetus_auratus
ENSMLUG00000008518	SMG5	100	91.283	ENSMAUG00000010381	Smg5	100	90.695	Mesocricetus_auratus
ENSMLUG00000008518	SMG5	100	93.738	ENSMICG00000002257	SMG5	100	94.618	Microcebus_murinus
ENSMLUG00000008518	SMG5	100	90.509	ENSMOCG00000016590	Smg5	100	90.998	Microtus_ochrogaster
ENSMLUG00000008518	SMG5	99	58.781	ENSMMOG00000017199	smg5	99	59.857	Mola_mola
ENSMLUG00000008518	SMG5	75	39.633	ENSMODG00000004735	-	86	39.733	Monodelphis_domestica
ENSMLUG00000008518	SMG5	80	37.136	ENSMODG00000010675	-	84	37.931	Monodelphis_domestica
ENSMLUG00000008518	SMG5	97	34.911	ENSMODG00000004511	-	99	34.347	Monodelphis_domestica
ENSMLUG00000008518	SMG5	87	88.354	ENSMODG00000016901	SMG5	98	88.242	Monodelphis_domestica
ENSMLUG00000008518	SMG5	93	37.317	ENSMODG00000004532	-	83	37.688	Monodelphis_domestica
ENSMLUG00000008518	SMG5	99	59.450	ENSMALG00000010375	smg5	99	59.929	Monopterus_albus
ENSMLUG00000008518	SMG5	100	91.577	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSMLUG00000008518	SMG5	100	91.773	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSMLUG00000008518	SMG5	100	91.300	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSMLUG00000008518	SMG5	100	91.577	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSMLUG00000008518	SMG5	94	90.861	ENSMPUG00000004546	SMG5	100	91.597	Mustela_putorius_furo
ENSMLUG00000008518	SMG5	99	43.891	ENSNGAG00000012101	-	99	44.193	Nannospalax_galili
ENSMLUG00000008518	SMG5	100	91.585	ENSNGAG00000020706	Smg5	100	91.683	Nannospalax_galili
ENSMLUG00000008518	SMG5	97	63.618	ENSNBRG00000004332	smg5	98	64.794	Neolamprologus_brichardi
ENSMLUG00000008518	SMG5	100	93.836	ENSNLEG00000012439	SMG5	100	94.716	Nomascus_leucogenys
ENSMLUG00000008518	SMG5	100	86.595	ENSMEUG00000012834	SMG5	100	86.106	Notamacropus_eugenii
ENSMLUG00000008518	SMG5	100	91.096	ENSOPRG00000009152	SMG5	100	91.879	Ochotona_princeps
ENSMLUG00000008518	SMG5	100	92.564	ENSODEG00000012237	SMG5	100	93.444	Octodon_degus
ENSMLUG00000008518	SMG5	89	40.741	ENSOCUG00000023338	-	99	39.978	Oryctolagus_cuniculus
ENSMLUG00000008518	SMG5	98	92.585	ENSOCUG00000012886	SMG5	100	93.387	Oryctolagus_cuniculus
ENSMLUG00000008518	SMG5	99	64.390	ENSORLG00020013127	smg5	99	65.107	Oryzias_latipes_hni
ENSMLUG00000008518	SMG5	99	64.820	ENSORLG00015019014	smg5	99	65.306	Oryzias_latipes_hsok
ENSMLUG00000008518	SMG5	82	58.930	ENSOMEG00000021330	smg5	92	59.806	Oryzias_melastigma
ENSMLUG00000008518	SMG5	100	91.879	ENSOGAG00000004966	SMG5	100	92.759	Otolemur_garnettii
ENSMLUG00000008518	SMG5	100	93.053	ENSOARG00000005778	SMG5	100	92.962	Ovis_aries
ENSMLUG00000008518	SMG5	99	44.650	ENSOARG00000011963	-	99	44.043	Ovis_aries
ENSMLUG00000008518	SMG5	100	93.836	ENSPPAG00000011996	SMG5	100	94.716	Pan_paniscus
ENSMLUG00000008518	SMG5	98	92.354	ENSPPRG00000011901	SMG5	100	92.254	Panthera_pardus
ENSMLUG00000008518	SMG5	96	85.845	ENSPTIG00000007892	SMG5	96	86.335	Panthera_tigris_altaica
ENSMLUG00000008518	SMG5	100	95.597	ENSPTRG00000049282	-	100	95.597	Pan_troglodytes
ENSMLUG00000008518	SMG5	100	95.597	ENSPTRG00000023925	SMG5	100	95.597	Pan_troglodytes
ENSMLUG00000008518	SMG5	100	95.793	ENSPANG00000011201	SMG5	100	95.793	Papio_anubis
ENSMLUG00000008518	SMG5	99	65.381	ENSPKIG00000009402	smg5	99	66.181	Paramormyrops_kingsleyae
ENSMLUG00000008518	SMG5	98	79.606	ENSPSIG00000015198	SMG5	100	79.031	Pelodiscus_sinensis
ENSMLUG00000008518	SMG5	99	61.014	ENSPMGG00000010465	smg5	99	60.942	Periophthalmus_magnuspinnatus
ENSMLUG00000008518	SMG5	100	91.871	ENSPEMG00000001819	Smg5	100	91.773	Peromyscus_maniculatus_bairdii
ENSMLUG00000008518	SMG5	56	46.316	ENSPEMG00000010022	-	95	45.789	Peromyscus_maniculatus_bairdii
ENSMLUG00000008518	SMG5	99	50.483	ENSPMAG00000000410	smg5	99	50.337	Petromyzon_marinus
ENSMLUG00000008518	SMG5	100	87.977	ENSPCIG00000018938	SMG5	100	87.879	Phascolarctos_cinereus
ENSMLUG00000008518	SMG5	50	60.781	ENSPFOG00000010191	smg5	99	62.724	Poecilia_formosa
ENSMLUG00000008518	SMG5	50	59.926	ENSPLAG00000009332	smg5	99	62.634	Poecilia_latipinna
ENSMLUG00000008518	SMG5	99	65.833	ENSPMEG00000014105	smg5	99	66.603	Poecilia_mexicana
ENSMLUG00000008518	SMG5	93	76.018	ENSPREG00000017713	smg5	99	62.455	Poecilia_reticulata
ENSMLUG00000008518	SMG5	100	95.890	ENSPPYG00000000723	SMG5	100	95.890	Pongo_abelii
ENSMLUG00000008518	SMG5	75	95.580	ENSPCAG00000008412	SMG5	81	95.580	Procavia_capensis
ENSMLUG00000008518	SMG5	100	93.542	ENSPCOG00000004741	SMG5	100	94.423	Propithecus_coquereli
ENSMLUG00000008518	SMG5	100	84.789	ENSPVAG00000016748	SMG5	100	85.714	Pteropus_vampyrus
ENSMLUG00000008518	SMG5	99	60.211	ENSPNYG00000013397	smg5	99	61.165	Pundamilia_nyererei
ENSMLUG00000008518	SMG5	100	91.773	ENSRNOG00000019590	Smg5	100	91.283	Rattus_norvegicus
ENSMLUG00000008518	SMG5	100	93.933	ENSRBIG00000027428	SMG5	100	94.814	Rhinopithecus_bieti
ENSMLUG00000008518	SMG5	100	93.836	ENSRROG00000030035	SMG5	100	94.716	Rhinopithecus_roxellana
ENSMLUG00000008518	SMG5	100	95.597	ENSSBOG00000033339	SMG5	100	95.597	Saimiri_boliviensis_boliviensis
ENSMLUG00000008518	SMG5	86	40.157	ENSSHAG00000000561	-	86	40.157	Sarcophilus_harrisii
ENSMLUG00000008518	SMG5	99	33.558	ENSSHAG00000009572	-	80	42.506	Sarcophilus_harrisii
ENSMLUG00000008518	SMG5	98	87.450	ENSSHAG00000014163	SMG5	100	87.351	Sarcophilus_harrisii
ENSMLUG00000008518	SMG5	64	40.936	ENSSHAG00000000935	-	82	42.073	Sarcophilus_harrisii
ENSMLUG00000008518	SMG5	99	65.373	ENSSFOG00015024175	smg5	99	64.666	Scleropages_formosus
ENSMLUG00000008518	SMG5	92	76.977	ENSSMAG00000013059	smg5	99	61.676	Scophthalmus_maximus
ENSMLUG00000008518	SMG5	99	60.619	ENSSDUG00000007122	smg5	99	61.504	Seriola_dumerili
ENSMLUG00000008518	SMG5	99	60.746	ENSSLDG00000011418	smg5	92	78.066	Seriola_lalandi_dorsalis
ENSMLUG00000008518	SMG5	90	79.740	ENSSARG00000012484	SMG5	100	79.848	Sorex_araneus
ENSMLUG00000008518	SMG5	94	77.800	ENSSPUG00000002260	SMG5	100	77.048	Sphenodon_punctatus
ENSMLUG00000008518	SMG5	99	65.628	ENSSPAG00000014266	smg5	98	65.598	Stegastes_partitus
ENSMLUG00000008518	SMG5	99	75.025	ENSSSCG00000039308	-	100	75.025	Sus_scrofa
ENSMLUG00000008518	SMG5	53	35.921	ENSSSCG00000037182	-	92	36.347	Sus_scrofa
ENSMLUG00000008518	SMG5	100	95.793	ENSSSCG00000006490	-	100	95.793	Sus_scrofa
ENSMLUG00000008518	SMG5	99	79.368	ENSTGUG00000003748	-	100	79.337	Taeniopygia_guttata
ENSMLUG00000008518	SMG5	99	63.454	ENSTRUG00000012580	smg5	99	64.519	Takifugu_rubripes
ENSMLUG00000008518	SMG5	99	64.638	ENSTNIG00000010303	smg5	99	64.451	Tetraodon_nigroviridis
ENSMLUG00000008518	SMG5	60	99.507	ENSTBEG00000002777	SMG5	60	99.507	Tupaia_belangeri
ENSMLUG00000008518	SMG5	100	89.530	ENSTTRG00000001401	SMG5	100	89.628	Tursiops_truncatus
ENSMLUG00000008518	SMG5	100	92.141	ENSUAMG00000013721	SMG5	100	92.141	Ursus_americanus
ENSMLUG00000008518	SMG5	98	87.663	ENSUMAG00000018041	SMG5	99	85.686	Ursus_maritimus
ENSMLUG00000008518	SMG5	98	84.353	ENSVPAG00000009446	SMG5	99	85.356	Vicugna_pacos
ENSMLUG00000008518	SMG5	100	92.466	ENSVVUG00000005887	SMG5	100	92.534	Vulpes_vulpes
ENSMLUG00000008518	SMG5	77	64.000	ENSXETG00000033791	SMG5	99	64.277	Xenopus_tropicalis
ENSMLUG00000008518	SMG5	70	75.566	ENSXCOG00000004379	smg5	95	68.681	Xiphophorus_couchianus
ENSMLUG00000008518	SMG5	93	75.339	ENSXMAG00000013499	smg5	99	66.409	Xiphophorus_maculatus