EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMLUG00000010980 (Gene tree)
Gene ID: 102423222
Gene Symbol: CPSF4
Alias: CPSF30|NAR
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Myotis_lucifugus
Status: putative
Strand: Minus strand
Length: 11370 bases
Position: chrGL429767:1276938-1288307
Accession: 2327
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMLUP00000009996	zf-CCCH	PF00642.24	4.4e-21	1	2
ENSMLUP00000009996	zf-CCCH	PF00642.24	4.4e-21	2	2
ENSMLUP00000009996	zf-CCHC	PF00098.23	2.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMLUT00000010969	CPSF4-201	627	XM_006081520	ENSMLUP00000009996	209 (aa)	-	G1PH56

Gene Model

Click here to download ENSMLUG00000010980's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMLUG00000010980's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMLUG00000010980	CPSF4	63	68.182	ENSMLUG00000009617	CPSF4L	74	68.182

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMLUG00000010980	CPSF4	100	98.095	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSMLUG00000010980	CPSF4	74	69.492	ENSAPOG00000004921	cpsf4	100	69.492	Acanthochromis_polyacanthus
ENSMLUG00000010980	CPSF4	100	88.085	ENSAMEG00000006252	CPSF4	87	88.085	Ailuropoda_melanoleuca
ENSMLUG00000010980	CPSF4	100	85.646	ENSACIG00000009248	cpsf4	86	85.646	Amphilophus_citrinellus
ENSMLUG00000010980	CPSF4	100	80.087	ENSAOCG00000019616	cpsf4	87	80.087	Amphiprion_ocellaris
ENSMLUG00000010980	CPSF4	100	80.087	ENSAPEG00000011679	cpsf4	87	80.087	Amphiprion_percula
ENSMLUG00000010980	CPSF4	100	83.333	ENSATEG00000007010	cpsf4	86	82.160	Anabas_testudineus
ENSMLUG00000010980	CPSF4	100	81.702	ENSACAG00000012941	CPSF4	78	80.851	Anolis_carolinensis
ENSMLUG00000010980	CPSF4	100	87.660	ENSANAG00000021360	CPSF4	87	87.660	Aotus_nancymaae
ENSMLUG00000010980	CPSF4	100	78.947	ENSACLG00000010374	cpsf4	87	77.922	Astatotilapia_calliptera
ENSMLUG00000010980	CPSF4	100	77.542	ENSAMXG00000031647	cpsf4	87	78.390	Astyanax_mexicanus
ENSMLUG00000010980	CPSF4	100	98.086	ENSBTAG00000002090	CPSF4	86	98.086	Bos_taurus
ENSMLUG00000010980	CPSF4	100	87.660	ENSCJAG00000015826	CPSF4	87	87.660	Callithrix_jacchus
ENSMLUG00000010980	CPSF4	100	87.660	ENSCAFG00000015036	CPSF4	87	87.660	Canis_familiaris
ENSMLUG00000010980	CPSF4	92	87.156	ENSCAFG00020014462	CPSF4	83	87.156	Canis_lupus_dingo
ENSMLUG00000010980	CPSF4	100	87.234	ENSCHIG00000014313	CPSF4	87	87.234	Capra_hircus
ENSMLUG00000010980	CPSF4	100	90.047	ENSTSYG00000014604	-	86	90.047	Carlito_syrichta
ENSMLUG00000010980	CPSF4	100	98.095	ENSTSYG00000005712	-	86	98.095	Carlito_syrichta
ENSMLUG00000010980	CPSF4	100	91.469	ENSTSYG00000008195	-	93	91.469	Carlito_syrichta
ENSMLUG00000010980	CPSF4	92	87.615	ENSCAPG00000013881	CPSF4	87	87.615	Cavia_aperea
ENSMLUG00000010980	CPSF4	100	98.571	ENSCPOG00000001783	CPSF4	86	98.571	Cavia_porcellus
ENSMLUG00000010980	CPSF4	100	87.660	ENSCCAG00000028291	CPSF4	87	87.660	Cebus_capucinus
ENSMLUG00000010980	CPSF4	100	89.952	ENSCATG00000038440	CPSF4	87	87.660	Cercocebus_atys
ENSMLUG00000010980	CPSF4	100	88.511	ENSCLAG00000007050	CPSF4	87	88.511	Chinchilla_lanigera
ENSMLUG00000010980	CPSF4	100	87.660	ENSCSAG00000017795	CPSF4	87	87.660	Chlorocebus_sabaeus
ENSMLUG00000010980	CPSF4	91	81.481	ENSCPBG00000020869	CPSF4	100	80.556	Chrysemys_picta_bellii
ENSMLUG00000010980	CPSF4	63	84.091	ENSCPBG00000010269	-	80	84.091	Chrysemys_picta_bellii
ENSMLUG00000010980	CPSF4	96	53.182	ENSCING00000021080	-	84	52.727	Ciona_intestinalis
ENSMLUG00000010980	CPSF4	95	49.402	ENSCSAVG00000011469	-	85	48.583	Ciona_savignyi
ENSMLUG00000010980	CPSF4	100	88.995	ENSCANG00000019384	CPSF4	87	87.660	Colobus_angolensis_palliatus
ENSMLUG00000010980	CPSF4	100	98.571	ENSCGRG00001024184	Cpsf4	86	98.571	Cricetulus_griseus_chok1gshd
ENSMLUG00000010980	CPSF4	100	88.085	ENSCGRG00000013892	Cpsf4	87	88.085	Cricetulus_griseus_crigri
ENSMLUG00000010980	CPSF4	100	78.355	ENSCSEG00000019055	cpsf4	87	78.355	Cynoglossus_semilaevis
ENSMLUG00000010980	CPSF4	100	78.788	ENSCVAG00000016528	cpsf4	87	78.788	Cyprinodon_variegatus
ENSMLUG00000010980	CPSF4	100	76.371	ENSDARG00000020217	cpsf4	87	76.793	Danio_rerio
ENSMLUG00000010980	CPSF4	100	87.660	ENSDNOG00000006344	CPSF4	87	87.660	Dasypus_novemcinctus
ENSMLUG00000010980	CPSF4	91	87.097	ENSDORG00000000742	Cpsf4	100	87.097	Dipodomys_ordii
ENSMLUG00000010980	CPSF4	100	53.488	FBgn0015621	Clp	87	53.876	Drosophila_melanogaster
ENSMLUG00000010980	CPSF4	73	100.000	ENSETEG00000002608	CPSF4	57	100.000	Echinops_telfairi
ENSMLUG00000010980	CPSF4	99	72.512	ENSEBUG00000012552	cpsf4	84	71.362	Eptatretus_burgeri
ENSMLUG00000010980	CPSF4	100	98.571	ENSEASG00005002487	CPSF4	86	98.571	Equus_asinus_asinus
ENSMLUG00000010980	CPSF4	100	88.085	ENSECAG00000007525	CPSF4	87	88.085	Equus_caballus
ENSMLUG00000010980	CPSF4	69	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSMLUG00000010980	CPSF4	100	76.050	ENSELUG00000011481	cpsf4	88	76.050	Esox_lucius
ENSMLUG00000010980	CPSF4	100	88.085	ENSFCAG00000015070	CPSF4	87	88.085	Felis_catus
ENSMLUG00000010980	CPSF4	50	67.857	ENSFALG00000012906	-	73	68.468	Ficedula_albicollis
ENSMLUG00000010980	CPSF4	100	95.215	ENSFALG00000013799	CPSF4	86	95.215	Ficedula_albicollis
ENSMLUG00000010980	CPSF4	100	88.085	ENSFDAG00000014092	CPSF4	97	88.085	Fukomys_damarensis
ENSMLUG00000010980	CPSF4	100	77.922	ENSFHEG00000010880	cpsf4	87	77.922	Fundulus_heteroclitus
ENSMLUG00000010980	CPSF4	100	78.571	ENSGMOG00000002330	cpsf4	87	78.571	Gadus_morhua
ENSMLUG00000010980	CPSF4	100	94.737	ENSGALG00000004714	CPSF4	86	94.737	Gallus_gallus
ENSMLUG00000010980	CPSF4	75	39.888	ENSGALG00000004441	-	92	39.326	Gallus_gallus
ENSMLUG00000010980	CPSF4	100	77.826	ENSGAFG00000010580	cpsf4	87	78.696	Gambusia_affinis
ENSMLUG00000010980	CPSF4	100	81.364	ENSGACG00000007792	cpsf4	87	81.364	Gasterosteus_aculeatus
ENSMLUG00000010980	CPSF4	100	82.128	ENSGAGG00000021835	CPSF4	87	81.277	Gopherus_agassizii
ENSMLUG00000010980	CPSF4	71	79.054	ENSGAGG00000020579	-	73	84.733	Gopherus_agassizii
ENSMLUG00000010980	CPSF4	100	87.660	ENSGGOG00000015131	CPSF4	87	87.660	Gorilla_gorilla
ENSMLUG00000010980	CPSF4	100	77.922	ENSHBUG00000013699	cpsf4	87	77.922	Haplochromis_burtoni
ENSMLUG00000010980	CPSF4	100	86.920	ENSHGLG00000017150	CPSF4	87	86.920	Heterocephalus_glaber_female
ENSMLUG00000010980	CPSF4	100	56.459	ENSHGLG00100017302	-	80	54.545	Heterocephalus_glaber_male
ENSMLUG00000010980	CPSF4	99	82.627	ENSHGLG00100009215	-	100	85.593	Heterocephalus_glaber_male
ENSMLUG00000010980	CPSF4	100	77.489	ENSHCOG00000004397	cpsf4	87	77.489	Hippocampus_comes
ENSMLUG00000010980	CPSF4	100	76.793	ENSIPUG00000017147	cpsf4	87	77.215	Ictalurus_punctatus
ENSMLUG00000010980	CPSF4	100	99.043	ENSSTOG00000001688	CPSF4	86	99.043	Ictidomys_tridecemlineatus
ENSMLUG00000010980	CPSF4	100	88.511	ENSJJAG00000019426	Cpsf4	87	88.511	Jaculus_jaculus
ENSMLUG00000010980	CPSF4	100	77.489	ENSKMAG00000015642	cpsf4	87	77.489	Kryptolebias_marmoratus
ENSMLUG00000010980	CPSF4	100	63.507	ENSLACG00000018470	-	86	63.063	Latimeria_chalumnae
ENSMLUG00000010980	CPSF4	100	81.356	ENSLACG00000010938	CPSF4	87	81.356	Latimeria_chalumnae
ENSMLUG00000010980	CPSF4	100	80.000	ENSLOCG00000004814	cpsf4	87	82.128	Lepisosteus_oculatus
ENSMLUG00000010980	CPSF4	100	87.660	ENSLAFG00000000159	CPSF4	100	81.865	Loxodonta_africana
ENSMLUG00000010980	CPSF4	91	98.429	ENSMFAG00000001462	CPSF4	100	98.429	Macaca_fascicularis
ENSMLUG00000010980	CPSF4	100	87.660	ENSMMUG00000019191	CPSF4	87	87.660	Macaca_mulatta
ENSMLUG00000010980	CPSF4	100	88.995	ENSMNEG00000032306	CPSF4	87	87.660	Macaca_nemestrina
ENSMLUG00000010980	CPSF4	100	89.952	ENSMLEG00000034721	CPSF4	87	87.660	Mandrillus_leucophaeus
ENSMLUG00000010980	CPSF4	100	79.399	ENSMAMG00000006244	cpsf4	87	79.399	Mastacembelus_armatus
ENSMLUG00000010980	CPSF4	100	77.922	ENSMZEG00005007515	cpsf4	87	77.922	Maylandia_zebra
ENSMLUG00000010980	CPSF4	100	95.215	ENSMGAG00000004235	CPSF4	100	95.215	Meleagris_gallopavo
ENSMLUG00000010980	CPSF4	100	88.085	ENSMAUG00000021253	Cpsf4	87	88.085	Mesocricetus_auratus
ENSMLUG00000010980	CPSF4	100	87.660	ENSMICG00000017429	CPSF4	87	87.660	Microcebus_murinus
ENSMLUG00000010980	CPSF4	100	88.085	ENSMOCG00000014901	Cpsf4	87	88.085	Microtus_ochrogaster
ENSMLUG00000010980	CPSF4	100	80.172	ENSMMOG00000001813	cpsf4	87	80.172	Mola_mola
ENSMLUG00000010980	CPSF4	100	83.404	ENSMODG00000001367	CPSF4	87	85.957	Monodelphis_domestica
ENSMLUG00000010980	CPSF4	100	78.970	ENSMALG00000012611	cpsf4	87	78.970	Monopterus_albus
ENSMLUG00000010980	CPSF4	100	99.043	MGP_CAROLIEiJ_G0028012	Cpsf4	86	99.043	Mus_caroli
ENSMLUG00000010980	CPSF4	100	99.043	ENSMUSG00000029625	Cpsf4	86	99.043	Mus_musculus
ENSMLUG00000010980	CPSF4	100	99.043	MGP_PahariEiJ_G0024581	Cpsf4	86	99.043	Mus_pahari
ENSMLUG00000010980	CPSF4	100	99.043	MGP_SPRETEiJ_G0029013	Cpsf4	86	99.043	Mus_spretus
ENSMLUG00000010980	CPSF4	100	88.085	ENSMPUG00000016508	CPSF4	87	88.085	Mustela_putorius_furo
ENSMLUG00000010980	CPSF4	100	87.660	ENSNGAG00000001567	Cpsf4	87	87.660	Nannospalax_galili
ENSMLUG00000010980	CPSF4	100	77.922	ENSNBRG00000003943	cpsf4	94	77.922	Neolamprologus_brichardi
ENSMLUG00000010980	CPSF4	100	98.095	ENSNLEG00000011074	CPSF4	86	98.095	Nomascus_leucogenys
ENSMLUG00000010980	CPSF4	100	83.404	ENSMEUG00000006955	CPSF4	87	85.957	Notamacropus_eugenii
ENSMLUG00000010980	CPSF4	100	88.511	ENSOPRG00000013663	CPSF4	87	88.511	Ochotona_princeps
ENSMLUG00000010980	CPSF4	92	89.691	ENSODEG00000018283	-	78	89.691	Octodon_degus
ENSMLUG00000010980	CPSF4	100	88.085	ENSODEG00000011181	-	87	88.085	Octodon_degus
ENSMLUG00000010980	CPSF4	100	70.485	ENSODEG00000009779	-	87	70.485	Octodon_degus
ENSMLUG00000010980	CPSF4	100	77.922	ENSONIG00000008495	cpsf4	87	77.922	Oreochromis_niloticus
ENSMLUG00000010980	CPSF4	100	85.897	ENSOANG00000007729	CPSF4	100	85.897	Ornithorhynchus_anatinus
ENSMLUG00000010980	CPSF4	92	54.867	ENSOANG00000009568	-	83	53.097	Ornithorhynchus_anatinus
ENSMLUG00000010980	CPSF4	100	88.085	ENSOCUG00000002437	CPSF4	61	88.085	Oryctolagus_cuniculus
ENSMLUG00000010980	CPSF4	100	77.922	ENSORLG00000022798	cpsf4	87	79.221	Oryzias_latipes
ENSMLUG00000010980	CPSF4	100	77.922	ENSORLG00020008548	cpsf4	87	79.221	Oryzias_latipes_hni
ENSMLUG00000010980	CPSF4	100	77.922	ENSORLG00015019575	cpsf4	87	79.221	Oryzias_latipes_hsok
ENSMLUG00000010980	CPSF4	100	77.056	ENSOMEG00000005176	cpsf4	87	78.355	Oryzias_melastigma
ENSMLUG00000010980	CPSF4	100	88.085	ENSOGAG00000010884	CPSF4	87	88.085	Otolemur_garnettii
ENSMLUG00000010980	CPSF4	100	74.477	ENSOARG00000018668	CPSF4	88	73.222	Ovis_aries
ENSMLUG00000010980	CPSF4	100	87.234	ENSPPAG00000043355	CPSF4	87	87.234	Pan_paniscus
ENSMLUG00000010980	CPSF4	100	88.085	ENSPPRG00000003134	CPSF4	87	88.085	Panthera_pardus
ENSMLUG00000010980	CPSF4	100	88.085	ENSPTIG00000005604	CPSF4	87	88.085	Panthera_tigris_altaica
ENSMLUG00000010980	CPSF4	100	87.234	ENSPTRG00000019453	CPSF4	87	87.234	Pan_troglodytes
ENSMLUG00000010980	CPSF4	100	88.995	ENSPANG00000023123	CPSF4	87	87.660	Papio_anubis
ENSMLUG00000010980	CPSF4	100	78.333	ENSPKIG00000014278	cpsf4	88	78.333	Paramormyrops_kingsleyae
ENSMLUG00000010980	CPSF4	91	81.019	ENSPSIG00000011229	CPSF4	100	80.093	Pelodiscus_sinensis
ENSMLUG00000010980	CPSF4	92	66.321	ENSPSIG00000018198	-	100	66.321	Pelodiscus_sinensis
ENSMLUG00000010980	CPSF4	92	86.082	ENSPMGG00000017735	cpsf4	81	82.990	Periophthalmus_magnuspinnatus
ENSMLUG00000010980	CPSF4	100	88.085	ENSPEMG00000004508	Cpsf4	87	88.085	Peromyscus_maniculatus_bairdii
ENSMLUG00000010980	CPSF4	100	83.404	ENSPCIG00000024776	CPSF4	87	85.957	Phascolarctos_cinereus
ENSMLUG00000010980	CPSF4	100	77.826	ENSPFOG00000014912	cpsf4	87	78.696	Poecilia_formosa
ENSMLUG00000010980	CPSF4	100	76.887	ENSPLAG00000009599	cpsf4	86	76.415	Poecilia_latipinna
ENSMLUG00000010980	CPSF4	100	77.826	ENSPMEG00000009790	cpsf4	87	78.696	Poecilia_mexicana
ENSMLUG00000010980	CPSF4	100	76.957	ENSPREG00000018166	cpsf4	87	73.684	Poecilia_reticulata
ENSMLUG00000010980	CPSF4	99	87.179	ENSPPYG00000017378	CPSF4	100	87.179	Pongo_abelii
ENSMLUG00000010980	CPSF4	100	87.234	ENSPCAG00000001892	CPSF4	87	87.234	Procavia_capensis
ENSMLUG00000010980	CPSF4	100	87.660	ENSPCOG00000012771	CPSF4	87	87.660	Propithecus_coquereli
ENSMLUG00000010980	CPSF4	91	87.558	ENSPVAG00000007531	CPSF4	81	87.558	Pteropus_vampyrus
ENSMLUG00000010980	CPSF4	100	77.922	ENSPNYG00000018559	cpsf4	87	77.922	Pundamilia_nyererei
ENSMLUG00000010980	CPSF4	100	78.814	ENSPNAG00000003736	cpsf4	87	78.814	Pygocentrus_nattereri
ENSMLUG00000010980	CPSF4	100	99.043	ENSRNOG00000000985	Cpsf4	86	99.043	Rattus_norvegicus
ENSMLUG00000010980	CPSF4	99	88.034	ENSRBIG00000033886	CPSF4	100	88.034	Rhinopithecus_bieti
ENSMLUG00000010980	CPSF4	100	98.095	ENSRROG00000040431	CPSF4	86	98.095	Rhinopithecus_roxellana
ENSMLUG00000010980	CPSF4	91	98.429	ENSSBOG00000020493	CPSF4	100	98.429	Saimiri_boliviensis_boliviensis
ENSMLUG00000010980	CPSF4	100	83.404	ENSSHAG00000011533	CPSF4	87	85.957	Sarcophilus_harrisii
ENSMLUG00000010980	CPSF4	100	78.926	ENSSFOG00015007883	cpsf4	88	78.926	Scleropages_formosus
ENSMLUG00000010980	CPSF4	100	85.782	ENSSMAG00000006374	cpsf4	86	85.782	Scophthalmus_maximus
ENSMLUG00000010980	CPSF4	100	79.310	ENSSDUG00000018887	cpsf4	87	79.310	Seriola_dumerili
ENSMLUG00000010980	CPSF4	100	79.310	ENSSLDG00000019078	cpsf4	87	79.310	Seriola_lalandi_dorsalis
ENSMLUG00000010980	CPSF4	99	88.462	ENSSARG00000012416	CPSF4	100	88.462	Sorex_araneus
ENSMLUG00000010980	CPSF4	100	83.830	ENSSPUG00000003549	CPSF4	87	81.702	Sphenodon_punctatus
ENSMLUG00000010980	CPSF4	95	64.851	ENSSPUG00000014803	-	82	63.861	Sphenodon_punctatus
ENSMLUG00000010980	CPSF4	100	86.603	ENSSPAG00000006174	cpsf4	86	86.603	Stegastes_partitus
ENSMLUG00000010980	CPSF4	100	98.571	ENSSSCG00000026896	CPSF4	86	98.571	Sus_scrofa
ENSMLUG00000010980	CPSF4	100	93.839	ENSTGUG00000007552	CPSF4	86	93.839	Taeniopygia_guttata
ENSMLUG00000010980	CPSF4	100	78.166	ENSTRUG00000024220	cpsf4	87	78.166	Takifugu_rubripes
ENSMLUG00000010980	CPSF4	100	77.729	ENSTNIG00000006265	cpsf4	87	78.603	Tetraodon_nigroviridis
ENSMLUG00000010980	CPSF4	99	76.496	ENSTBEG00000011406	CPSF4	100	76.068	Tupaia_belangeri
ENSMLUG00000010980	CPSF4	100	74.894	ENSTTRG00000003007	CPSF4	87	74.894	Tursiops_truncatus
ENSMLUG00000010980	CPSF4	89	98.930	ENSUAMG00000008051	CPSF4	72	98.930	Ursus_americanus
ENSMLUG00000010980	CPSF4	100	99.043	ENSUMAG00000009474	CPSF4	86	99.043	Ursus_maritimus
ENSMLUG00000010980	CPSF4	100	98.095	ENSVVUG00000008824	CPSF4	86	98.095	Vulpes_vulpes
ENSMLUG00000010980	CPSF4	99	60.776	ENSXETG00000004641	cpsf4l	86	59.914	Xenopus_tropicalis
ENSMLUG00000010980	CPSF4	100	77.959	ENSXETG00000009892	cpsf4	88	79.592	Xenopus_tropicalis
ENSMLUG00000010980	CPSF4	100	77.391	ENSXCOG00000016040	cpsf4	87	78.261	Xiphophorus_couchianus
ENSMLUG00000010980	CPSF4	100	77.826	ENSXMAG00000024670	cpsf4	87	78.696	Xiphophorus_maculatus