EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMLUG00000012122 (Gene tree)
Gene ID: 102423624
Gene Symbol: UPF1
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Myotis_lucifugus
Status: putative
Strand: Plus strand
Length: 39291 bases
Position: chrGL430078:552572-591862
Accession: 102423624
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMLUP00000011055	UPF1_Zn_bind	PF09416.10	4.9e-75	1	1
ENSMLUP00000011055	ResIII	PF04851.15	1.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMLUT00000012134	UPF1-201	3357	XM_006100425	ENSMLUP00000011055	1118 (aa)	XP_023619772	G1PJW3

Gene Model

Click here to download ENSMLUG00000012122's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMLUG00000012122's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMLUG00000012122	UPF1	99	99.193	ENSG00000005007	UPF1	99	99.193	Homo_sapiens
ENSMLUG00000012122	UPF1	99	91.250	ENSAPOG00000023773	upf1	99	91.339	Acanthochromis_polyacanthus
ENSMLUG00000012122	UPF1	99	92.480	ENSAPOG00000010916	-	99	92.480	Acanthochromis_polyacanthus
ENSMLUG00000012122	UPF1	99	97.343	ENSAMEG00000011474	UPF1	99	97.343	Ailuropoda_melanoleuca
ENSMLUG00000012122	UPF1	99	91.079	ENSACIG00000019949	upf1	99	91.429	Amphilophus_citrinellus
ENSMLUG00000012122	UPF1	92	94.829	ENSACIG00000010985	-	100	94.927	Amphilophus_citrinellus
ENSMLUG00000012122	UPF1	99	90.762	ENSAOCG00000018519	upf1	99	91.335	Amphiprion_ocellaris
ENSMLUG00000012122	UPF1	99	92.480	ENSAOCG00000006352	-	100	92.308	Amphiprion_ocellaris
ENSMLUG00000012122	UPF1	99	92.480	ENSAPEG00000006292	-	100	92.308	Amphiprion_percula
ENSMLUG00000012122	UPF1	99	90.762	ENSAPEG00000016344	upf1	99	91.335	Amphiprion_percula
ENSMLUG00000012122	UPF1	99	92.569	ENSATEG00000016606	-	99	92.569	Anabas_testudineus
ENSMLUG00000012122	UPF1	99	89.938	ENSATEG00000017867	upf1	99	90.733	Anabas_testudineus
ENSMLUG00000012122	UPF1	93	97.818	ENSAPLG00000009175	UPF1	100	97.818	Anas_platyrhynchos
ENSMLUG00000012122	UPF1	96	94.848	ENSANAG00000024107	UPF1	97	94.848	Aotus_nancymaae
ENSMLUG00000012122	UPF1	99	90.812	ENSACLG00000007181	upf1	99	91.161	Astatotilapia_calliptera
ENSMLUG00000012122	UPF1	99	92.211	ENSACLG00000022630	-	99	92.122	Astatotilapia_calliptera
ENSMLUG00000012122	UPF1	99	92.934	ENSAMXG00000042187	upf1	99	93.381	Astyanax_mexicanus
ENSMLUG00000012122	UPF1	99	98.224	ENSBTAG00000020922	UPF1	99	98.224	Bos_taurus
ENSMLUG00000012122	UPF1	89	51.039	WBGene00004880	smg-2	99	48.165	Caenorhabditis_elegans
ENSMLUG00000012122	UPF1	99	98.224	ENSCJAG00000019627	UPF1	99	98.224	Callithrix_jacchus
ENSMLUG00000012122	UPF1	99	98.579	ENSCAFG00000014578	UPF1	99	98.579	Canis_familiaris
ENSMLUG00000012122	UPF1	99	99.552	ENSCAFG00020012347	UPF1	99	99.552	Canis_lupus_dingo
ENSMLUG00000012122	UPF1	99	99.193	ENSCHIG00000011018	UPF1	99	99.193	Capra_hircus
ENSMLUG00000012122	UPF1	96	96.953	ENSTSYG00000008877	UPF1	99	96.953	Carlito_syrichta
ENSMLUG00000012122	UPF1	93	98.002	ENSCAPG00000005758	UPF1	95	98.002	Cavia_aperea
ENSMLUG00000012122	UPF1	99	95.660	ENSCPOG00000025463	UPF1	99	95.660	Cavia_porcellus
ENSMLUG00000012122	UPF1	99	99.193	ENSCCAG00000032175	UPF1	99	99.193	Cebus_capucinus
ENSMLUG00000012122	UPF1	93	98.384	ENSCATG00000040306	UPF1	98	98.384	Cercocebus_atys
ENSMLUG00000012122	UPF1	97	96.055	ENSCLAG00000004037	UPF1	99	98.382	Chinchilla_lanigera
ENSMLUG00000012122	UPF1	99	99.103	ENSCSAG00000005276	UPF1	99	99.103	Chlorocebus_sabaeus
ENSMLUG00000012122	UPF1	99	96.869	ENSCPBG00000012513	UPF1	99	96.869	Chrysemys_picta_bellii
ENSMLUG00000012122	UPF1	77	78.186	ENSCING00000021399	-	99	78.186	Ciona_intestinalis
ENSMLUG00000012122	UPF1	99	71.833	ENSCSAVG00000006533	-	99	71.922	Ciona_savignyi
ENSMLUG00000012122	UPF1	95	97.300	ENSCANG00000029819	UPF1	99	97.300	Colobus_angolensis_palliatus
ENSMLUG00000012122	UPF1	99	98.206	ENSCGRG00001021067	Upf1	99	98.206	Cricetulus_griseus_chok1gshd
ENSMLUG00000012122	UPF1	95	97.004	ENSCGRG00000013480	Upf1	99	97.004	Cricetulus_griseus_crigri
ENSMLUG00000012122	UPF1	99	92.473	ENSCSEG00000016159	-	99	92.384	Cynoglossus_semilaevis
ENSMLUG00000012122	UPF1	99	86.124	ENSCSEG00000017239	upf1	99	86.213	Cynoglossus_semilaevis
ENSMLUG00000012122	UPF1	99	92.122	ENSCVAG00000010561	upf1	99	92.032	Cyprinodon_variegatus
ENSMLUG00000012122	UPF1	99	92.844	ENSDARG00000016302	upf1	99	93.292	Danio_rerio
ENSMLUG00000012122	UPF1	95	94.069	ENSDORG00000009984	Upf1	95	95.722	Dipodomys_ordii
ENSMLUG00000012122	UPF1	85	70.924	FBgn0030354	Upf1	84	67.404	Drosophila_melanogaster
ENSMLUG00000012122	UPF1	55	85.342	ENSEBUG00000010069	upf1	96	85.179	Eptatretus_burgeri
ENSMLUG00000012122	UPF1	99	99.103	ENSEASG00005006549	UPF1	99	99.103	Equus_asinus_asinus
ENSMLUG00000012122	UPF1	99	99.103	ENSECAG00000010639	UPF1	99	99.103	Equus_caballus
ENSMLUG00000012122	UPF1	99	91.726	ENSELUG00000012916	-	99	91.644	Esox_lucius
ENSMLUG00000012122	UPF1	99	90.294	ENSELUG00000020917	upf1	99	90.561	Esox_lucius
ENSMLUG00000012122	UPF1	99	98.490	ENSFCAG00000009757	UPF1	99	98.490	Felis_catus
ENSMLUG00000012122	UPF1	96	96.571	ENSFALG00000009312	UPF1	99	96.571	Ficedula_albicollis
ENSMLUG00000012122	UPF1	95	96.753	ENSFDAG00000014816	UPF1	99	98.287	Fukomys_damarensis
ENSMLUG00000012122	UPF1	85	94.527	ENSFHEG00000016276	-	96	94.527	Fundulus_heteroclitus
ENSMLUG00000012122	UPF1	99	88.188	ENSFHEG00000006428	upf1	99	88.188	Fundulus_heteroclitus
ENSMLUG00000012122	UPF1	99	91.046	ENSGMOG00000007541	upf1	99	91.489	Gadus_morhua
ENSMLUG00000012122	UPF1	99	97.404	ENSGALG00000003220	UPF1	99	97.404	Gallus_gallus
ENSMLUG00000012122	UPF1	62	95.533	ENSGAFG00000015443	-	85	95.533	Gambusia_affinis
ENSMLUG00000012122	UPF1	99	92.025	ENSGAFG00000004831	upf1	99	91.935	Gambusia_affinis
ENSMLUG00000012122	UPF1	99	97.133	ENSGAGG00000022217	UPF1	99	97.133	Gopherus_agassizii
ENSMLUG00000012122	UPF1	93	99.615	ENSGGOG00000002608	UPF1	99	99.615	Gorilla_gorilla
ENSMLUG00000012122	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSMLUG00000012122	UPF1	90	86.207	ENSHBUG00000014694	upf1	99	86.207	Haplochromis_burtoni
ENSMLUG00000012122	UPF1	99	97.869	ENSHGLG00000010900	UPF1	99	97.869	Heterocephalus_glaber_female
ENSMLUG00000012122	UPF1	96	94.649	ENSHGLG00100005904	UPF1	99	94.649	Heterocephalus_glaber_male
ENSMLUG00000012122	UPF1	99	91.487	ENSHCOG00000008918	upf1	100	93.810	Hippocampus_comes
ENSMLUG00000012122	UPF1	99	93.381	ENSIPUG00000005108	UPF1	99	93.739	Ictalurus_punctatus
ENSMLUG00000012122	UPF1	99	99.013	ENSSTOG00000009196	UPF1	99	99.013	Ictidomys_tridecemlineatus
ENSMLUG00000012122	UPF1	99	97.069	ENSJJAG00000023151	Upf1	99	97.069	Jaculus_jaculus
ENSMLUG00000012122	UPF1	99	92.480	ENSKMAG00000004962	upf1	99	92.390	Kryptolebias_marmoratus
ENSMLUG00000012122	UPF1	99	89.302	ENSLBEG00000014862	upf1	99	90.451	Labrus_bergylta
ENSMLUG00000012122	UPF1	99	92.218	ENSLBEG00000027848	-	99	92.218	Labrus_bergylta
ENSMLUG00000012122	UPF1	62	97.131	ENSLACG00000008482	UPF1	100	97.131	Latimeria_chalumnae
ENSMLUG00000012122	UPF1	99	94.892	ENSLOCG00000002072	upf1	99	94.892	Lepisosteus_oculatus
ENSMLUG00000012122	UPF1	99	97.513	ENSLAFG00000014963	UPF1	99	97.513	Loxodonta_africana
ENSMLUG00000012122	UPF1	99	98.224	ENSMFAG00000037748	UPF1	99	98.224	Macaca_fascicularis
ENSMLUG00000012122	UPF1	99	98.224	ENSMMUG00000023286	UPF1	99	98.224	Macaca_mulatta
ENSMLUG00000012122	UPF1	99	98.224	ENSMNEG00000000046	UPF1	99	98.224	Macaca_nemestrina
ENSMLUG00000012122	UPF1	93	98.573	ENSMLEG00000028404	UPF1	99	98.573	Mandrillus_leucophaeus
ENSMLUG00000012122	UPF1	99	91.592	ENSMAMG00000006231	-	99	92.039	Mastacembelus_armatus
ENSMLUG00000012122	UPF1	99	89.673	ENSMAMG00000006229	upf1	99	90.644	Mastacembelus_armatus
ENSMLUG00000012122	UPF1	99	89.771	ENSMZEG00005003489	upf1	99	90.957	Maylandia_zebra
ENSMLUG00000012122	UPF1	99	92.211	ENSMZEG00005016386	-	99	92.122	Maylandia_zebra
ENSMLUG00000012122	UPF1	93	97.433	ENSMGAG00000004745	UPF1	100	97.433	Meleagris_gallopavo
ENSMLUG00000012122	UPF1	95	96.289	ENSMAUG00000011398	Upf1	97	96.289	Mesocricetus_auratus
ENSMLUG00000012122	UPF1	99	99.103	ENSMICG00000001659	UPF1	99	99.103	Microcebus_murinus
ENSMLUG00000012122	UPF1	99	97.158	ENSMOCG00000005699	Upf1	99	97.158	Microtus_ochrogaster
ENSMLUG00000012122	UPF1	99	90.493	ENSMMOG00000007881	upf1	99	90.950	Mola_mola
ENSMLUG00000012122	UPF1	93	92.256	ENSMMOG00000007537	-	99	92.352	Mola_mola
ENSMLUG00000012122	UPF1	99	96.811	ENSMODG00000003689	UPF1	99	96.811	Monodelphis_domestica
ENSMLUG00000012122	UPF1	99	90.762	ENSMALG00000000144	upf1	99	91.031	Monopterus_albus
ENSMLUG00000012122	UPF1	99	91.266	ENSMALG00000018100	-	99	91.266	Monopterus_albus
ENSMLUG00000012122	UPF1	99	98.117	MGP_CAROLIEiJ_G0031142	Upf1	99	98.117	Mus_caroli
ENSMLUG00000012122	UPF1	99	98.117	ENSMUSG00000058301	Upf1	99	98.117	Mus_musculus
ENSMLUG00000012122	UPF1	99	98.117	MGP_PahariEiJ_G0021607	Upf1	99	98.117	Mus_pahari
ENSMLUG00000012122	UPF1	99	98.117	MGP_SPRETEiJ_G0032260	Upf1	99	98.117	Mus_spretus
ENSMLUG00000012122	UPF1	99	99.552	ENSMPUG00000015516	UPF1	99	99.552	Mustela_putorius_furo
ENSMLUG00000012122	UPF1	99	97.161	ENSNGAG00000024107	Upf1	99	97.161	Nannospalax_galili
ENSMLUG00000012122	UPF1	99	89.117	ENSNBRG00000000670	upf1	99	89.464	Neolamprologus_brichardi
ENSMLUG00000012122	UPF1	99	88.860	ENSNBRG00000022069	-	100	93.780	Neolamprologus_brichardi
ENSMLUG00000012122	UPF1	93	92.769	ENSNLEG00000006062	UPF1	99	92.769	Nomascus_leucogenys
ENSMLUG00000012122	UPF1	83	94.118	ENSMEUG00000014146	-	83	94.118	Notamacropus_eugenii
ENSMLUG00000012122	UPF1	93	91.731	ENSOPRG00000014018	UPF1	99	91.731	Ochotona_princeps
ENSMLUG00000012122	UPF1	99	96.536	ENSODEG00000012426	UPF1	99	96.536	Octodon_degus
ENSMLUG00000012122	UPF1	99	92.301	ENSONIG00000012729	-	99	92.211	Oreochromis_niloticus
ENSMLUG00000012122	UPF1	99	90.035	ENSONIG00000010452	upf1	99	91.223	Oreochromis_niloticus
ENSMLUG00000012122	UPF1	99	96.365	ENSOANG00000004568	UPF1	99	96.365	Ornithorhynchus_anatinus
ENSMLUG00000012122	UPF1	99	92.390	ENSORLG00000008453	upf1	99	92.390	Oryzias_latipes
ENSMLUG00000012122	UPF1	99	92.308	ENSORLG00020014758	upf1	99	92.308	Oryzias_latipes_hni
ENSMLUG00000012122	UPF1	99	92.308	ENSORLG00015010165	upf1	99	92.308	Oryzias_latipes_hsok
ENSMLUG00000012122	UPF1	99	92.480	ENSOMEG00000003665	upf1	99	92.390	Oryzias_melastigma
ENSMLUG00000012122	UPF1	99	99.283	ENSOGAG00000012866	UPF1	99	99.283	Otolemur_garnettii
ENSMLUG00000012122	UPF1	96	96.504	ENSOARG00000010739	UPF1	100	96.504	Ovis_aries
ENSMLUG00000012122	UPF1	95	97.300	ENSPPAG00000043884	UPF1	97	97.300	Pan_paniscus
ENSMLUG00000012122	UPF1	99	98.490	ENSPPRG00000023470	UPF1	99	98.490	Panthera_pardus
ENSMLUG00000012122	UPF1	93	97.601	ENSPTIG00000010159	UPF1	99	97.601	Panthera_tigris_altaica
ENSMLUG00000012122	UPF1	99	98.224	ENSPTRG00000010721	UPF1	99	98.224	Pan_troglodytes
ENSMLUG00000012122	UPF1	99	98.224	ENSPANG00000008847	UPF1	99	98.224	Papio_anubis
ENSMLUG00000012122	UPF1	94	92.410	ENSPKIG00000006069	upf1	99	92.315	Paramormyrops_kingsleyae
ENSMLUG00000012122	UPF1	68	97.778	ENSPSIG00000009491	UPF1	100	97.778	Pelodiscus_sinensis
ENSMLUG00000012122	UPF1	99	89.107	ENSPMGG00000017327	upf1	99	89.216	Periophthalmus_magnuspinnatus
ENSMLUG00000012122	UPF1	99	97.247	ENSPEMG00000001085	Upf1	99	97.247	Peromyscus_maniculatus_bairdii
ENSMLUG00000012122	UPF1	99	86.833	ENSPMAG00000001206	upf1	99	86.566	Petromyzon_marinus
ENSMLUG00000012122	UPF1	99	98.296	ENSPCIG00000006156	UPF1	99	98.296	Phascolarctos_cinereus
ENSMLUG00000012122	UPF1	99	89.254	ENSPLAG00000018155	-	99	89.165	Poecilia_latipinna
ENSMLUG00000012122	UPF1	99	92.115	ENSPLAG00000016232	-	99	92.025	Poecilia_latipinna
ENSMLUG00000012122	UPF1	99	92.032	ENSPMEG00000016319	-	99	91.943	Poecilia_mexicana
ENSMLUG00000012122	UPF1	99	89.803	ENSPMEG00000011443	-	99	89.714	Poecilia_mexicana
ENSMLUG00000012122	UPF1	99	89.698	ENSPREG00000009940	upf1	99	89.698	Poecilia_reticulata
ENSMLUG00000012122	UPF1	99	91.935	ENSPREG00000011247	-	99	91.846	Poecilia_reticulata
ENSMLUG00000012122	UPF1	99	93.339	ENSPPYG00000009752	UPF1	99	93.339	Pongo_abelii
ENSMLUG00000012122	UPF1	75	100.000	ENSPCAG00000012962	UPF1	75	100.000	Procavia_capensis
ENSMLUG00000012122	UPF1	99	98.135	ENSPCOG00000023813	UPF1	99	98.135	Propithecus_coquereli
ENSMLUG00000012122	UPF1	68	100.000	ENSPVAG00000003183	UPF1	68	100.000	Pteropus_vampyrus
ENSMLUG00000012122	UPF1	99	92.211	ENSPNYG00000016731	-	99	92.122	Pundamilia_nyererei
ENSMLUG00000012122	UPF1	99	89.771	ENSPNYG00000003694	upf1	99	90.957	Pundamilia_nyererei
ENSMLUG00000012122	UPF1	99	93.113	ENSPNAG00000025614	upf1	99	93.560	Pygocentrus_nattereri
ENSMLUG00000012122	UPF1	99	98.117	ENSRNOG00000020134	Upf1	99	98.117	Rattus_norvegicus
ENSMLUG00000012122	UPF1	95	94.972	ENSRBIG00000013894	UPF1	98	99.452	Rhinopithecus_bieti
ENSMLUG00000012122	UPF1	95	97.300	ENSRROG00000040935	UPF1	98	99.452	Rhinopithecus_roxellana
ENSMLUG00000012122	UPF1	71	57.822	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSMLUG00000012122	UPF1	96	96.221	ENSSBOG00000023632	UPF1	98	96.221	Saimiri_boliviensis_boliviensis
ENSMLUG00000012122	UPF1	93	97.816	ENSSHAG00000010499	UPF1	100	97.816	Sarcophilus_harrisii
ENSMLUG00000012122	UPF1	99	94.808	ENSSFOG00015021095	upf1	100	96.938	Scleropages_formosus
ENSMLUG00000012122	UPF1	99	92.308	ENSSMAG00000021018	-	99	92.308	Scophthalmus_maximus
ENSMLUG00000012122	UPF1	99	88.948	ENSSMAG00000005055	upf1	99	89.753	Scophthalmus_maximus
ENSMLUG00000012122	UPF1	99	92.576	ENSSDUG00000009629	-	99	92.576	Seriola_dumerili
ENSMLUG00000012122	UPF1	99	89.938	ENSSDUG00000013320	upf1	99	90.909	Seriola_dumerili
ENSMLUG00000012122	UPF1	99	92.576	ENSSLDG00000006878	-	99	92.576	Seriola_lalandi_dorsalis
ENSMLUG00000012122	UPF1	99	90.739	ENSSLDG00000020868	upf1	99	91.200	Seriola_lalandi_dorsalis
ENSMLUG00000012122	UPF1	99	97.040	ENSSPUG00000010538	UPF1	99	97.040	Sphenodon_punctatus
ENSMLUG00000012122	UPF1	99	89.247	ENSSPAG00000000003	upf1	99	89.187	Stegastes_partitus
ENSMLUG00000012122	UPF1	99	92.563	ENSSPAG00000011521	-	99	92.473	Stegastes_partitus
ENSMLUG00000012122	UPF1	99	99.103	ENSSSCG00000039301	UPF1	99	99.712	Sus_scrofa
ENSMLUG00000012122	UPF1	82	89.446	ENSTGUG00000001057	UPF1	99	94.830	Taeniopygia_guttata
ENSMLUG00000012122	UPF1	99	90.404	ENSTRUG00000000150	upf1	99	90.404	Takifugu_rubripes
ENSMLUG00000012122	UPF1	99	91.398	ENSTRUG00000005131	-	99	91.398	Takifugu_rubripes
ENSMLUG00000012122	UPF1	99	95.247	ENSTTRG00000011544	UPF1	99	95.247	Tursiops_truncatus
ENSMLUG00000012122	UPF1	99	99.462	ENSUAMG00000007093	UPF1	99	99.462	Ursus_americanus
ENSMLUG00000012122	UPF1	95	98.679	ENSUMAG00000006652	UPF1	99	99.793	Ursus_maritimus
ENSMLUG00000012122	UPF1	99	99.552	ENSVVUG00000007797	UPF1	99	99.552	Vulpes_vulpes
ENSMLUG00000012122	UPF1	99	82.099	ENSXETG00000013602	upf1	99	82.228	Xenopus_tropicalis
ENSMLUG00000012122	UPF1	92	94.665	ENSXCOG00000005764	-	100	94.665	Xiphophorus_couchianus
ENSMLUG00000012122	UPF1	96	89.620	ENSXCOG00000015275	-	96	89.527	Xiphophorus_couchianus
ENSMLUG00000012122	UPF1	99	91.853	ENSXMAG00000002540	-	99	91.764	Xiphophorus_maculatus
ENSMLUG00000012122	UPF1	99	89.875	ENSXMAG00000001703	-	99	89.785	Xiphophorus_maculatus