EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMLUG00000016007 (Gene tree)
Gene ID: 102422164
Gene Symbol: SMNDC1
Alias: SMNR|SPF30|TDRD16C
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Myotis_lucifugus
Status: putative
Strand: Minus strand
Length: 8118 bases
Position: chrGL429811:2754556-2762673
Accession: 102422164
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMLUP00000014580	SMN	PF06003.12	5.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMLUT00000016006	SMNDC1-201	717	XM_006088115	ENSMLUP00000014580	238 (aa)	XP_006088178	G1PTM1

Gene Model

Click here to download ENSMLUG00000016007's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMLUG00000016007's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMLUG00000016007	SMNDC1	100	98.319	ENSG00000119953	SMNDC1	100	98.319	Homo_sapiens
ENSMLUG00000016007	SMNDC1	100	74.790	ENSAPOG00000021772	smndc1	100	74.790	Acanthochromis_polyacanthus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSAMEG00000005251	SMNDC1	100	98.739	Ailuropoda_melanoleuca
ENSMLUG00000016007	SMNDC1	100	76.050	ENSACIG00000004819	smndc1	100	76.050	Amphilophus_citrinellus
ENSMLUG00000016007	SMNDC1	100	74.790	ENSAOCG00000017869	smndc1	100	74.790	Amphiprion_ocellaris
ENSMLUG00000016007	SMNDC1	100	74.790	ENSAPEG00000007752	smndc1	100	74.790	Amphiprion_percula
ENSMLUG00000016007	SMNDC1	100	76.050	ENSATEG00000006830	smndc1	100	76.050	Anabas_testudineus
ENSMLUG00000016007	SMNDC1	83	95.960	ENSAPLG00000004322	SMNDC1	100	95.960	Anas_platyrhynchos
ENSMLUG00000016007	SMNDC1	100	94.538	ENSACAG00000005983	SMNDC1	100	94.538	Anolis_carolinensis
ENSMLUG00000016007	SMNDC1	100	98.739	ENSANAG00000032875	SMNDC1	100	98.739	Aotus_nancymaae
ENSMLUG00000016007	SMNDC1	100	76.471	ENSACLG00000016360	smndc1	100	76.471	Astatotilapia_calliptera
ENSMLUG00000016007	SMNDC1	100	76.471	ENSAMXG00000020310	smndc1	100	76.471	Astyanax_mexicanus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSBTAG00000000551	SMNDC1	100	98.739	Bos_taurus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSCJAG00000018624	SMNDC1	100	98.739	Callithrix_jacchus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSCAFG00000010720	SMNDC1	100	98.739	Canis_familiaris
ENSMLUG00000016007	SMNDC1	100	98.739	ENSCAFG00020011913	SMNDC1	100	98.739	Canis_lupus_dingo
ENSMLUG00000016007	SMNDC1	100	98.739	ENSCHIG00000010604	SMNDC1	100	98.739	Capra_hircus
ENSMLUG00000016007	SMNDC1	100	99.160	ENSTSYG00000026454	SMNDC1	100	99.160	Carlito_syrichta
ENSMLUG00000016007	SMNDC1	100	83.750	ENSCAPG00000009132	SMNDC1	100	98.507	Cavia_aperea
ENSMLUG00000016007	SMNDC1	100	98.739	ENSCPOG00000031666	SMNDC1	100	98.739	Cavia_porcellus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSCCAG00000021793	SMNDC1	100	98.739	Cebus_capucinus
ENSMLUG00000016007	SMNDC1	100	98.319	ENSCATG00000035910	SMNDC1	100	98.319	Cercocebus_atys
ENSMLUG00000016007	SMNDC1	100	98.739	ENSCLAG00000002838	SMNDC1	100	98.739	Chinchilla_lanigera
ENSMLUG00000016007	SMNDC1	100	98.739	ENSCSAG00000005169	SMNDC1	100	98.739	Chlorocebus_sabaeus
ENSMLUG00000016007	SMNDC1	81	97.927	ENSCHOG00000002936	SMNDC1	100	97.927	Choloepus_hoffmanni
ENSMLUG00000016007	SMNDC1	100	97.479	ENSCPBG00000012837	SMNDC1	100	97.479	Chrysemys_picta_bellii
ENSMLUG00000016007	SMNDC1	100	90.756	ENSCANG00000034620	-	100	90.756	Colobus_angolensis_palliatus
ENSMLUG00000016007	SMNDC1	100	78.151	ENSCANG00000036994	-	100	78.151	Colobus_angolensis_palliatus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSCANG00000031720	-	100	98.739	Colobus_angolensis_palliatus
ENSMLUG00000016007	SMNDC1	100	97.899	ENSCGRG00001012973	Smndc1	100	97.899	Cricetulus_griseus_chok1gshd
ENSMLUG00000016007	SMNDC1	100	97.899	ENSCGRG00000012396	Smndc1	100	97.899	Cricetulus_griseus_crigri
ENSMLUG00000016007	SMNDC1	100	75.630	ENSCSEG00000015621	smndc1	100	75.630	Cynoglossus_semilaevis
ENSMLUG00000016007	SMNDC1	100	76.471	ENSCVAG00000020432	smndc1	100	76.471	Cyprinodon_variegatus
ENSMLUG00000016007	SMNDC1	100	78.571	ENSDARG00000056235	smndc1	100	78.571	Danio_rerio
ENSMLUG00000016007	SMNDC1	100	98.739	ENSDNOG00000016387	SMNDC1	83	98.739	Dasypus_novemcinctus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSDORG00000023715	Smndc1	100	98.739	Dipodomys_ordii
ENSMLUG00000016007	SMNDC1	95	42.570	FBgn0039977	CG17454	98	43.373	Drosophila_melanogaster
ENSMLUG00000016007	SMNDC1	100	70.954	ENSEBUG00000010929	smndc1	100	70.954	Eptatretus_burgeri
ENSMLUG00000016007	SMNDC1	100	98.739	ENSEASG00005014930	SMNDC1	100	98.739	Equus_asinus_asinus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSECAG00000029973	SMNDC1	100	98.739	Equus_caballus
ENSMLUG00000016007	SMNDC1	83	69.697	ENSEEUG00000013407	-	100	69.697	Erinaceus_europaeus
ENSMLUG00000016007	SMNDC1	100	77.731	ENSELUG00000000227	smndc1	100	77.731	Esox_lucius
ENSMLUG00000016007	SMNDC1	100	98.739	ENSFCAG00000027353	SMNDC1	100	98.739	Felis_catus
ENSMLUG00000016007	SMNDC1	100	95.798	ENSFALG00000002306	SMNDC1	100	95.798	Ficedula_albicollis
ENSMLUG00000016007	SMNDC1	100	98.319	ENSFDAG00000006468	SMNDC1	100	98.319	Fukomys_damarensis
ENSMLUG00000016007	SMNDC1	100	76.050	ENSFHEG00000020150	smndc1	100	76.050	Fundulus_heteroclitus
ENSMLUG00000016007	SMNDC1	100	76.471	ENSGMOG00000016585	smndc1	100	76.471	Gadus_morhua
ENSMLUG00000016007	SMNDC1	100	95.798	ENSGALG00000008561	SMNDC1	100	95.798	Gallus_gallus
ENSMLUG00000016007	SMNDC1	100	75.210	ENSGAFG00000011582	smndc1	100	75.210	Gambusia_affinis
ENSMLUG00000016007	SMNDC1	100	75.630	ENSGACG00000009468	smndc1	100	75.630	Gasterosteus_aculeatus
ENSMLUG00000016007	SMNDC1	100	97.479	ENSGAGG00000024547	SMNDC1	100	97.479	Gopherus_agassizii
ENSMLUG00000016007	SMNDC1	100	98.739	ENSGGOG00000010071	SMNDC1	100	98.739	Gorilla_gorilla
ENSMLUG00000016007	SMNDC1	100	76.471	ENSHBUG00000017596	smndc1	100	76.471	Haplochromis_burtoni
ENSMLUG00000016007	SMNDC1	100	67.623	ENSHGLG00000001157	-	100	64.082	Heterocephalus_glaber_female
ENSMLUG00000016007	SMNDC1	100	98.319	ENSHGLG00000013390	-	100	98.319	Heterocephalus_glaber_female
ENSMLUG00000016007	SMNDC1	100	76.639	ENSHGLG00100004278	-	100	76.230	Heterocephalus_glaber_male
ENSMLUG00000016007	SMNDC1	100	98.319	ENSHGLG00100004814	-	100	98.319	Heterocephalus_glaber_male
ENSMLUG00000016007	SMNDC1	100	74.895	ENSHCOG00000000783	smndc1	100	74.895	Hippocampus_comes
ENSMLUG00000016007	SMNDC1	100	77.731	ENSIPUG00000004217	smndc1	100	77.731	Ictalurus_punctatus
ENSMLUG00000016007	SMNDC1	100	99.160	ENSSTOG00000006088	SMNDC1	100	99.160	Ictidomys_tridecemlineatus
ENSMLUG00000016007	SMNDC1	100	97.899	ENSJJAG00000019974	Smndc1	100	97.899	Jaculus_jaculus
ENSMLUG00000016007	SMNDC1	100	74.790	ENSKMAG00000020134	smndc1	100	74.790	Kryptolebias_marmoratus
ENSMLUG00000016007	SMNDC1	100	74.790	ENSLBEG00000004598	smndc1	100	74.790	Labrus_bergylta
ENSMLUG00000016007	SMNDC1	100	83.613	ENSLACG00000007784	SMNDC1	100	83.613	Latimeria_chalumnae
ENSMLUG00000016007	SMNDC1	100	83.613	ENSLOCG00000012355	smndc1	100	83.613	Lepisosteus_oculatus
ENSMLUG00000016007	SMNDC1	100	98.319	ENSLAFG00000014353	SMNDC1	100	98.319	Loxodonta_africana
ENSMLUG00000016007	SMNDC1	100	80.672	ENSMFAG00000038381	-	100	80.672	Macaca_fascicularis
ENSMLUG00000016007	SMNDC1	100	98.739	ENSMFAG00000002433	-	100	98.739	Macaca_fascicularis
ENSMLUG00000016007	SMNDC1	100	98.739	ENSMMUG00000007775	SMNDC1	100	98.739	Macaca_mulatta
ENSMLUG00000016007	SMNDC1	100	80.672	ENSMMUG00000045875	-	100	80.672	Macaca_mulatta
ENSMLUG00000016007	SMNDC1	100	98.739	ENSMNEG00000042963	-	100	98.739	Macaca_nemestrina
ENSMLUG00000016007	SMNDC1	100	86.975	ENSMNEG00000033853	-	100	86.975	Macaca_nemestrina
ENSMLUG00000016007	SMNDC1	100	92.469	ENSMLEG00000040236	SMNDC1	100	92.050	Mandrillus_leucophaeus
ENSMLUG00000016007	SMNDC1	89	73.239	ENSMAMG00000018233	smndc1	87	73.239	Mastacembelus_armatus
ENSMLUG00000016007	SMNDC1	100	76.471	ENSMZEG00005027510	smndc1	100	76.471	Maylandia_zebra
ENSMLUG00000016007	SMNDC1	84	95.500	ENSMGAG00000010777	SMNDC1	84	95.500	Meleagris_gallopavo
ENSMLUG00000016007	SMNDC1	100	98.739	ENSMAUG00000012243	-	100	98.739	Mesocricetus_auratus
ENSMLUG00000016007	SMNDC1	99	79.747	ENSMAUG00000005459	-	93	79.747	Mesocricetus_auratus
ENSMLUG00000016007	SMNDC1	100	97.899	ENSMICG00000027336	-	100	97.899	Microcebus_murinus
ENSMLUG00000016007	SMNDC1	100	85.714	ENSMICG00000031640	-	100	85.714	Microcebus_murinus
ENSMLUG00000016007	SMNDC1	100	98.319	ENSMOCG00000002458	Smndc1	100	98.319	Microtus_ochrogaster
ENSMLUG00000016007	SMNDC1	100	76.050	ENSMMOG00000008856	smndc1	100	76.050	Mola_mola
ENSMLUG00000016007	SMNDC1	100	98.739	ENSMODG00000010542	SMNDC1	100	98.739	Monodelphis_domestica
ENSMLUG00000016007	SMNDC1	100	76.471	ENSMALG00000017598	smndc1	100	76.471	Monopterus_albus
ENSMLUG00000016007	SMNDC1	100	97.479	MGP_CAROLIEiJ_G0023072	Smndc1	100	97.479	Mus_caroli
ENSMLUG00000016007	SMNDC1	100	97.899	ENSMUSG00000025024	Smndc1	100	97.899	Mus_musculus
ENSMLUG00000016007	SMNDC1	100	98.319	MGP_PahariEiJ_G0014560	Smndc1	100	98.319	Mus_pahari
ENSMLUG00000016007	SMNDC1	100	97.899	MGP_SPRETEiJ_G0023993	Smndc1	100	97.899	Mus_spretus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSMPUG00000002089	SMNDC1	100	98.739	Mustela_putorius_furo
ENSMLUG00000016007	SMNDC1	100	98.319	ENSNGAG00000006833	Smndc1	100	98.319	Nannospalax_galili
ENSMLUG00000016007	SMNDC1	100	76.050	ENSNBRG00000017089	smndc1	100	76.050	Neolamprologus_brichardi
ENSMLUG00000016007	SMNDC1	100	98.739	ENSNLEG00000015471	SMNDC1	100	98.739	Nomascus_leucogenys
ENSMLUG00000016007	SMNDC1	82	58.000	ENSMEUG00000010120	-	99	58.500	Notamacropus_eugenii
ENSMLUG00000016007	SMNDC1	100	98.739	ENSOPRG00000015348	SMNDC1	100	98.739	Ochotona_princeps
ENSMLUG00000016007	SMNDC1	100	68.908	ENSODEG00000007594	-	100	65.966	Octodon_degus
ENSMLUG00000016007	SMNDC1	100	76.050	ENSONIG00000000434	smndc1	100	76.050	Oreochromis_niloticus
ENSMLUG00000016007	SMNDC1	100	97.479	ENSOANG00000001598	SMNDC1	100	97.479	Ornithorhynchus_anatinus
ENSMLUG00000016007	SMNDC1	100	74.370	ENSOCUG00000012274	-	100	76.050	Oryctolagus_cuniculus
ENSMLUG00000016007	SMNDC1	100	97.899	ENSOCUG00000008145	-	100	97.899	Oryctolagus_cuniculus
ENSMLUG00000016007	SMNDC1	100	75.630	ENSORLG00000005934	smndc1	95	75.630	Oryzias_latipes
ENSMLUG00000016007	SMNDC1	100	75.630	ENSORLG00020008796	smndc1	95	75.630	Oryzias_latipes_hni
ENSMLUG00000016007	SMNDC1	100	75.630	ENSORLG00015013666	smndc1	100	75.630	Oryzias_latipes_hsok
ENSMLUG00000016007	SMNDC1	100	77.731	ENSOMEG00000007590	smndc1	100	77.731	Oryzias_melastigma
ENSMLUG00000016007	SMNDC1	100	98.739	ENSOGAG00000000571	SMNDC1	100	98.739	Otolemur_garnettii
ENSMLUG00000016007	SMNDC1	100	98.739	ENSOARG00000009500	SMNDC1	100	98.739	Ovis_aries
ENSMLUG00000016007	SMNDC1	100	98.739	ENSPPAG00000027815	SMNDC1	100	98.739	Pan_paniscus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSPPRG00000013749	SMNDC1	100	98.739	Panthera_pardus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSPTIG00000011451	SMNDC1	100	98.739	Panthera_tigris_altaica
ENSMLUG00000016007	SMNDC1	100	98.739	ENSPTRG00000002937	SMNDC1	100	98.739	Pan_troglodytes
ENSMLUG00000016007	SMNDC1	100	98.739	ENSPANG00000020805	-	100	98.739	Papio_anubis
ENSMLUG00000016007	SMNDC1	100	92.857	ENSPANG00000031346	-	100	92.857	Papio_anubis
ENSMLUG00000016007	SMNDC1	100	79.832	ENSPKIG00000017164	smndc1	100	79.832	Paramormyrops_kingsleyae
ENSMLUG00000016007	SMNDC1	100	97.059	ENSPSIG00000012257	SMNDC1	100	97.059	Pelodiscus_sinensis
ENSMLUG00000016007	SMNDC1	100	73.529	ENSPMGG00000015651	smndc1	100	73.529	Periophthalmus_magnuspinnatus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSPEMG00000022058	Smndc1	100	98.739	Peromyscus_maniculatus_bairdii
ENSMLUG00000016007	SMNDC1	100	67.213	ENSPMAG00000007705	smndc1	100	67.213	Petromyzon_marinus
ENSMLUG00000016007	SMNDC1	97	63.478	ENSPCIG00000009693	-	100	63.478	Phascolarctos_cinereus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSPCIG00000018419	SMNDC1	100	98.739	Phascolarctos_cinereus
ENSMLUG00000016007	SMNDC1	100	75.630	ENSPFOG00000017113	smndc1	100	75.630	Poecilia_formosa
ENSMLUG00000016007	SMNDC1	100	76.050	ENSPLAG00000010372	smndc1	100	76.050	Poecilia_latipinna
ENSMLUG00000016007	SMNDC1	100	76.050	ENSPMEG00000012288	smndc1	100	76.050	Poecilia_mexicana
ENSMLUG00000016007	SMNDC1	100	75.210	ENSPREG00000012279	smndc1	100	75.210	Poecilia_reticulata
ENSMLUG00000016007	SMNDC1	100	98.739	ENSPPYG00000002643	SMNDC1	100	98.739	Pongo_abelii
ENSMLUG00000016007	SMNDC1	81	96.891	ENSPCAG00000016183	SMNDC1	100	96.891	Procavia_capensis
ENSMLUG00000016007	SMNDC1	100	98.319	ENSPCOG00000024343	SMNDC1	100	98.319	Propithecus_coquereli
ENSMLUG00000016007	SMNDC1	100	75.210	ENSPVAG00000004368	SMNDC1	100	75.210	Pteropus_vampyrus
ENSMLUG00000016007	SMNDC1	92	70.222	ENSPNYG00000024093	smndc1	98	70.222	Pundamilia_nyererei
ENSMLUG00000016007	SMNDC1	100	76.471	ENSPNAG00000025285	smndc1	100	76.471	Pygocentrus_nattereri
ENSMLUG00000016007	SMNDC1	100	97.479	ENSRNOG00000014833	Smndc1	100	97.479	Rattus_norvegicus
ENSMLUG00000016007	SMNDC1	100	98.319	ENSRBIG00000000224	-	100	98.319	Rhinopithecus_bieti
ENSMLUG00000016007	SMNDC1	100	82.773	ENSRBIG00000032452	-	100	82.773	Rhinopithecus_bieti
ENSMLUG00000016007	SMNDC1	100	83.193	ENSRROG00000039125	-	100	83.193	Rhinopithecus_roxellana
ENSMLUG00000016007	SMNDC1	100	98.739	ENSRROG00000044992	-	100	98.739	Rhinopithecus_roxellana
ENSMLUG00000016007	SMNDC1	100	98.739	ENSSBOG00000026789	SMNDC1	100	98.739	Saimiri_boliviensis_boliviensis
ENSMLUG00000016007	SMNDC1	100	98.739	ENSSHAG00000015189	SMNDC1	100	98.739	Sarcophilus_harrisii
ENSMLUG00000016007	SMNDC1	100	79.832	ENSSFOG00015008311	smndc1	100	79.832	Scleropages_formosus
ENSMLUG00000016007	SMNDC1	100	76.050	ENSSMAG00000020118	smndc1	100	76.050	Scophthalmus_maximus
ENSMLUG00000016007	SMNDC1	100	76.471	ENSSDUG00000015330	smndc1	100	76.471	Seriola_dumerili
ENSMLUG00000016007	SMNDC1	100	76.471	ENSSLDG00000017325	smndc1	100	76.471	Seriola_lalandi_dorsalis
ENSMLUG00000016007	SMNDC1	100	98.739	ENSSARG00000006063	SMNDC1	100	98.739	Sorex_araneus
ENSMLUG00000016007	SMNDC1	100	95.798	ENSSPUG00000004574	SMNDC1	100	95.798	Sphenodon_punctatus
ENSMLUG00000016007	SMNDC1	100	74.370	ENSSPAG00000000338	smndc1	100	74.370	Stegastes_partitus
ENSMLUG00000016007	SMNDC1	100	99.160	ENSSSCG00000030507	SMNDC1	100	99.160	Sus_scrofa
ENSMLUG00000016007	SMNDC1	100	95.798	ENSTGUG00000010599	SMNDC1	100	95.798	Taeniopygia_guttata
ENSMLUG00000016007	SMNDC1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSMLUG00000016007	SMNDC1	100	74.790	ENSTNIG00000013331	smndc1	100	74.790	Tetraodon_nigroviridis
ENSMLUG00000016007	SMNDC1	100	98.319	ENSTBEG00000014337	SMNDC1	100	98.319	Tupaia_belangeri
ENSMLUG00000016007	SMNDC1	100	98.739	ENSUAMG00000008142	SMNDC1	100	98.739	Ursus_americanus
ENSMLUG00000016007	SMNDC1	100	98.739	ENSUMAG00000023722	SMNDC1	100	98.739	Ursus_maritimus
ENSMLUG00000016007	SMNDC1	83	98.990	ENSVPAG00000003402	SMNDC1	100	98.990	Vicugna_pacos
ENSMLUG00000016007	SMNDC1	100	98.739	ENSVVUG00000007820	SMNDC1	100	98.739	Vulpes_vulpes
ENSMLUG00000016007	SMNDC1	60	81.690	ENSXETG00000015415	SMNDC1	100	81.690	Xenopus_tropicalis
ENSMLUG00000016007	SMNDC1	100	75.210	ENSXCOG00000009159	smndc1	100	75.210	Xiphophorus_couchianus
ENSMLUG00000016007	SMNDC1	100	74.790	ENSXMAG00000012755	smndc1	100	74.790	Xiphophorus_maculatus