EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSMMOG00000004026 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Mola_mola
Status
putative
Strand
Plus strand
Length
1204 bases
Position
chrKV751334.1:32553748-32554951
Accession
ZDB-GENE-070822-23
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMMOP00000005041LSMPF01423.223.5e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMMOT00000005132-264-ENSMMOP0000000504187 (aa)--
Gene Model
Click here to download ENSMMOG00000004026's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMMOG00000004026's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMMOG00000004026lsm56836.066ENSMMOG00000010041snrpe6436.066
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMMOG00000004026lsm58797.368ENSG00000106355LSM510096.774Homo_sapiens
ENSMMOG00000004026lsm57798.507ENSAPOG00000011743LSM5100100.000Acanthochromis_polyacanthus
ENSMMOG00000004026lsm587100.000ENSAPOG00000020779LSM584100.000Acanthochromis_polyacanthus
ENSMMOG00000004026lsm58797.368ENSAMEG00000006700LSM58497.368Ailuropoda_melanoleuca
ENSMMOG00000004026lsm55295.556ENSACIG00000019185lsm58095.556Amphilophus_citrinellus
ENSMMOG00000004026lsm587100.000ENSAOCG00000001636lsm584100.000Amphiprion_ocellaris
ENSMMOG00000004026lsm587100.000ENSAPEG00000008151lsm584100.000Amphiprion_percula
ENSMMOG00000004026lsm571100.000ENSAPEG00000008201lsm5100100.000Amphiprion_percula
ENSMMOG00000004026lsm57798.507ENSATEG00000020470lsm57695.556Anabas_testudineus
ENSMMOG00000004026lsm58597.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSMMOG00000004026lsm58797.368ENSANAG00000034409-8497.368Aotus_nancymaae
ENSMMOG00000004026lsm58793.421ENSANAG00000024192-7993.421Aotus_nancymaae
ENSMMOG00000004026lsm57587.692ENSANAG00000037758-8187.692Aotus_nancymaae
ENSMMOG00000004026lsm587100.000ENSACLG00000012891lsm586100.000Astatotilapia_calliptera
ENSMMOG00000004026lsm58783.544ENSAMXG00000035543lsm58483.544Astyanax_mexicanus
ENSMMOG00000004026lsm58797.368ENSBTAG00000002332LSM58497.368Bos_taurus
ENSMMOG00000004026lsm58775.000WBGene00003079lsm-58475.000Caenorhabditis_elegans
ENSMMOG00000004026lsm58797.368ENSCJAG00000047379LSM55886.486Callithrix_jacchus
ENSMMOG00000004026lsm58784.211ENSCJAG00000005678-8484.211Callithrix_jacchus
ENSMMOG00000004026lsm58796.053ENSCAFG00000019261-8496.053Canis_familiaris
ENSMMOG00000004026lsm58797.368ENSCAFG00020004946LSM58497.368Canis_lupus_dingo
ENSMMOG00000004026lsm57669.697ENSCHIG00000021428-8667.500Capra_hircus
ENSMMOG00000004026lsm58794.737ENSCHIG00000004079-8394.737Capra_hircus
ENSMMOG00000004026lsm58797.368ENSCHIG00000024539LSM58497.368Capra_hircus
ENSMMOG00000004026lsm58782.895ENSTSYG00000028728-8282.895Carlito_syrichta
ENSMMOG00000004026lsm58797.368ENSTSYG00000006449-8497.368Carlito_syrichta
ENSMMOG00000004026lsm58767.105ENSTSYG00000036637-7967.105Carlito_syrichta
ENSMMOG00000004026lsm57886.765ENSTSYG00000026530-7486.765Carlito_syrichta
ENSMMOG00000004026lsm58690.667ENSCAPG00000006980LSM510090.667Cavia_aperea
ENSMMOG00000004026lsm58797.368ENSCPOG00000036386LSM58497.368Cavia_porcellus
ENSMMOG00000004026lsm58796.053ENSCCAG00000032123-8496.053Cebus_capucinus
ENSMMOG00000004026lsm58797.368ENSCCAG00000037808-8497.368Cebus_capucinus
ENSMMOG00000004026lsm58796.053ENSCCAG00000000821-8496.053Cebus_capucinus
ENSMMOG00000004026lsm57875.000ENSCCAG00000037334-8875.000Cebus_capucinus
ENSMMOG00000004026lsm57590.769ENSCCAG00000032792-8190.769Cebus_capucinus
ENSMMOG00000004026lsm58784.211ENSCATG00000014790-8384.211Cercocebus_atys
ENSMMOG00000004026lsm58797.368ENSCATG00000040218LSM510096.774Cercocebus_atys
ENSMMOG00000004026lsm59579.518ENSCLAG00000005062-8279.518Chinchilla_lanigera
ENSMMOG00000004026lsm58797.368ENSCLAG00000000202LSM58497.368Chinchilla_lanigera
ENSMMOG00000004026lsm56998.333ENSCHOG00000005335LSM57998.333Choloepus_hoffmanni
ENSMMOG00000004026lsm58797.368ENSCPBG00000013685LSM58497.368Chrysemys_picta_bellii
ENSMMOG00000004026lsm58786.842ENSCING00000020625-8586.842Ciona_intestinalis
ENSMMOG00000004026lsm510079.310ENSCSAVG00000001439-9979.310Ciona_savignyi
ENSMMOG00000004026lsm58797.368ENSCANG00000039909LSM510096.774Colobus_angolensis_palliatus
ENSMMOG00000004026lsm58797.368ENSCGRG00001015461Lsm58497.368Cricetulus_griseus_chok1gshd
ENSMMOG00000004026lsm58697.333ENSCGRG00000007677Lsm510097.333Cricetulus_griseus_crigri
ENSMMOG00000004026lsm55295.556ENSCSEG00000015286lsm57695.556Cynoglossus_semilaevis
ENSMMOG00000004026lsm59495.122ENSCVAG00000004262lsm59295.122Cyprinodon_variegatus
ENSMMOG00000004026lsm58798.684ENSDARG00000071573lsm510098.387Danio_rerio
ENSMMOG00000004026lsm58797.368ENSDNOG00000034958LSM58497.368Dasypus_novemcinctus
ENSMMOG00000004026lsm58384.722ENSDNOG00000049495-7984.722Dasypus_novemcinctus
ENSMMOG00000004026lsm58797.368ENSDORG00000009422Lsm58497.368Dipodomys_ordii
ENSMMOG00000004026lsm58387.500FBgn0035675CG66107987.500Drosophila_melanogaster
ENSMMOG00000004026lsm58797.368ENSETEG00000018068LSM58497.368Echinops_telfairi
ENSMMOG00000004026lsm58776.316ENSETEG00000001469-8176.316Echinops_telfairi
ENSMMOG00000004026lsm58578.378ENSETEG00000016074-9878.378Echinops_telfairi
ENSMMOG00000004026lsm58777.632ENSETEG00000010651-8277.632Echinops_telfairi
ENSMMOG00000004026lsm58362.500ENSETEG00000000777-8860.494Echinops_telfairi
ENSMMOG00000004026lsm58794.737ENSEBUG00000008540lsm58494.737Eptatretus_burgeri
ENSMMOG00000004026lsm58797.368ENSEASG00005003500LSM58497.368Equus_asinus_asinus
ENSMMOG00000004026lsm58780.263ENSECAG00000018445LSM58280.263Equus_caballus
ENSMMOG00000004026lsm56692.982ENSEEUG00000004102LSM59592.982Erinaceus_europaeus
ENSMMOG00000004026lsm58798.684ENSELUG00000007792lsm58498.684Esox_lucius
ENSMMOG00000004026lsm58797.368ENSFCAG00000000230LSM58497.368Felis_catus
ENSMMOG00000004026lsm58996.104ENSFALG00000001892LSM59396.104Ficedula_albicollis
ENSMMOG00000004026lsm58767.105ENSFDAG00000008685-8967.105Fukomys_damarensis
ENSMMOG00000004026lsm58797.368ENSFDAG00000008767LSM58497.368Fukomys_damarensis
ENSMMOG00000004026lsm59382.716ENSFHEG00000004011lsm58288.158Fundulus_heteroclitus
ENSMMOG00000004026lsm586100.000ENSGMOG00000018235lsm583100.000Gadus_morhua
ENSMMOG00000004026lsm58797.368ENSGALG00000041625LSM58497.368Gallus_gallus
ENSMMOG00000004026lsm571100.000ENSGAFG00000016824lsm5100100.000Gambusia_affinis
ENSMMOG00000004026lsm587100.000ENSGACG00000005528lsm584100.000Gasterosteus_aculeatus
ENSMMOG00000004026lsm58797.368ENSGAGG00000015593LSM58497.368Gopherus_agassizii
ENSMMOG00000004026lsm58797.368ENSGGOG00000043469LSM58497.368Gorilla_gorilla
ENSMMOG00000004026lsm587100.000ENSHBUG00000013773lsm586100.000Haplochromis_burtoni
ENSMMOG00000004026lsm58797.368ENSHGLG00000011765LSM58497.368Heterocephalus_glaber_female
ENSMMOG00000004026lsm59293.750ENSHGLG00100015610LSM59093.750Heterocephalus_glaber_male
ENSMMOG00000004026lsm55293.333ENSHCOG00000008288lsm57693.333Hippocampus_comes
ENSMMOG00000004026lsm58798.684ENSIPUG00000021095LSM58498.684Ictalurus_punctatus
ENSMMOG00000004026lsm58782.895ENSSTOG00000033886-8582.895Ictidomys_tridecemlineatus
ENSMMOG00000004026lsm58797.368ENSSTOG00000012662LSM58497.368Ictidomys_tridecemlineatus
ENSMMOG00000004026lsm58288.732ENSJJAG00000004475-9088.732Jaculus_jaculus
ENSMMOG00000004026lsm58797.368ENSJJAG00000012145-8497.368Jaculus_jaculus
ENSMMOG00000004026lsm57177.419ENSJJAG00000016144-7577.419Jaculus_jaculus
ENSMMOG00000004026lsm58798.684ENSKMAG00000021861lsm58498.684Kryptolebias_marmoratus
ENSMMOG00000004026lsm57798.507ENSLBEG00000009235LSM55398.507Labrus_bergylta
ENSMMOG00000004026lsm58797.368ENSLACG00000022448LSM58497.368Latimeria_chalumnae
ENSMMOG00000004026lsm58798.684ENSLOCG00000012903lsm58498.684Lepisosteus_oculatus
ENSMMOG00000004026lsm59568.675ENSLAFG00000027938-9068.675Loxodonta_africana
ENSMMOG00000004026lsm58797.368ENSLAFG00000029579LSM58497.368Loxodonta_africana
ENSMMOG00000004026lsm58797.368ENSMFAG00000038508LSM58497.368Macaca_fascicularis
ENSMMOG00000004026lsm58794.737ENSMFAG00000030152-8494.737Macaca_fascicularis
ENSMMOG00000004026lsm58785.526ENSMMUG00000039822-8385.526Macaca_mulatta
ENSMMOG00000004026lsm58794.737ENSMMUG00000030131-8494.737Macaca_mulatta
ENSMMOG00000004026lsm58797.368ENSMNEG00000015331LSM510096.774Macaca_nemestrina
ENSMMOG00000004026lsm58794.737ENSMNEG00000037935-8494.737Macaca_nemestrina
ENSMMOG00000004026lsm58784.211ENSMLEG00000034037-8484.211Mandrillus_leucophaeus
ENSMMOG00000004026lsm58797.368ENSMLEG00000024945LSM58497.368Mandrillus_leucophaeus
ENSMMOG00000004026lsm58794.737ENSMAMG00000012869lsm58494.737Mastacembelus_armatus
ENSMMOG00000004026lsm587100.000ENSMZEG00005019554lsm586100.000Maylandia_zebra
ENSMMOG00000004026lsm58797.368ENSMGAG00000012117LSM58497.368Meleagris_gallopavo
ENSMMOG00000004026lsm58797.368ENSMAUG00000012222Lsm58497.368Mesocricetus_auratus
ENSMMOG00000004026lsm59295.062ENSMAUG00000008132-8995.062Mesocricetus_auratus
ENSMMOG00000004026lsm58797.368ENSMICG00000005353LSM58497.368Microcebus_murinus
ENSMMOG00000004026lsm56896.610ENSMICG00000033928-7796.610Microcebus_murinus
ENSMMOG00000004026lsm58797.368ENSMOCG00000012018Lsm58497.368Microtus_ochrogaster
ENSMMOG00000004026lsm57196.774ENSMODG00000013274-10096.774Monodelphis_domestica
ENSMMOG00000004026lsm57193.548ENSMALG00000010343lsm510093.548Monopterus_albus
ENSMMOG00000004026lsm58797.368MGP_CAROLIEiJ_G0028421Lsm58497.368Mus_caroli
ENSMMOG00000004026lsm58797.368ENSMUSG00000091625Lsm58497.368Mus_musculus
ENSMMOG00000004026lsm58797.368MGP_PahariEiJ_G0022171Lsm58497.368Mus_pahari
ENSMMOG00000004026lsm58797.368MGP_SPRETEiJ_G0029423Lsm58497.368Mus_spretus
ENSMMOG00000004026lsm58797.368ENSMLUG00000017028LSM58497.368Myotis_lucifugus
ENSMMOG00000004026lsm58797.368ENSNGAG00000024142Lsm58497.368Nannospalax_galili
ENSMMOG00000004026lsm59571.084ENSNGAG00000022569-8871.084Nannospalax_galili
ENSMMOG00000004026lsm58784.615ENSNGAG00000017707-8384.615Nannospalax_galili
ENSMMOG00000004026lsm56698.246ENSNBRG00000011386lsm57698.246Neolamprologus_brichardi
ENSMMOG00000004026lsm58797.368ENSNLEG00000015268LSM58497.368Nomascus_leucogenys
ENSMMOG00000004026lsm58697.333ENSOPRG00000002443LSM510097.333Ochotona_princeps
ENSMMOG00000004026lsm58797.368ENSODEG00000008258-8497.368Octodon_degus
ENSMMOG00000004026lsm58797.368ENSODEG00000019072-8497.368Octodon_degus
ENSMMOG00000004026lsm58358.333ENSOANG00000014540-9658.333Ornithorhynchus_anatinus
ENSMMOG00000004026lsm58797.368ENSOCUG00000029043LSM58497.368Oryctolagus_cuniculus
ENSMMOG00000004026lsm59197.468ENSORLG00020003019lsm58297.468Oryzias_latipes_hni
ENSMMOG00000004026lsm58798.684ENSORLG00015003338lsm58498.684Oryzias_latipes_hsok
ENSMMOG00000004026lsm59197.468ENSOMEG00000001078lsm58498.684Oryzias_melastigma
ENSMMOG00000004026lsm58797.368ENSOGAG00000013892LSM58497.368Otolemur_garnettii
ENSMMOG00000004026lsm58797.368ENSOARG00000006944LSM58497.368Ovis_aries
ENSMMOG00000004026lsm58797.368ENSPPAG00000003697-8497.368Pan_paniscus
ENSMMOG00000004026lsm58797.368ENSPPRG00000002550LSM58497.368Panthera_pardus
ENSMMOG00000004026lsm58797.368ENSPTIG00000015604LSM58497.368Panthera_tigris_altaica
ENSMMOG00000004026lsm58797.368ENSPTRG00000019057LSM58497.368Pan_troglodytes
ENSMMOG00000004026lsm58777.632ENSPTRG00000049488-8380.263Pan_troglodytes
ENSMMOG00000004026lsm59292.593ENSPANG00000033477-8992.593Papio_anubis
ENSMMOG00000004026lsm58785.526ENSPANG00000032538-8385.526Papio_anubis
ENSMMOG00000004026lsm58797.368ENSPANG00000032179-8497.368Papio_anubis
ENSMMOG00000004026lsm58798.684ENSPKIG00000011910lsm58498.684Paramormyrops_kingsleyae
ENSMMOG00000004026lsm58597.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSMMOG00000004026lsm571100.000ENSPMGG00000011699lsm5100100.000Periophthalmus_magnuspinnatus
ENSMMOG00000004026lsm59567.470ENSPEMG00000022375-9067.470Peromyscus_maniculatus_bairdii
ENSMMOG00000004026lsm587100.000ENSPFOG00000001433lsm584100.000Poecilia_formosa
ENSMMOG00000004026lsm587100.000ENSPLAG00000009665lsm584100.000Poecilia_latipinna
ENSMMOG00000004026lsm587100.000ENSPMEG00000022265lsm584100.000Poecilia_mexicana
ENSMMOG00000004026lsm571100.000ENSPREG00000022452lsm5100100.000Poecilia_reticulata
ENSMMOG00000004026lsm58793.421ENSPPYG00000017661LSM58493.421Pongo_abelii
ENSMMOG00000004026lsm57698.485ENSPCAG00000013740LSM58198.485Procavia_capensis
ENSMMOG00000004026lsm58797.368ENSPVAG00000009786LSM58497.368Pteropus_vampyrus
ENSMMOG00000004026lsm587100.000ENSPNYG00000022236lsm586100.000Pundamilia_nyererei
ENSMMOG00000004026lsm58798.684ENSPNAG00000001887lsm58498.684Pygocentrus_nattereri
ENSMMOG00000004026lsm58797.368ENSRNOG00000042126Lsm58497.368Rattus_norvegicus
ENSMMOG00000004026lsm58794.805ENSRNOG00000027305AABR07065089.18494.805Rattus_norvegicus
ENSMMOG00000004026lsm58797.368ENSRBIG00000030714-8497.368Rhinopithecus_bieti
ENSMMOG00000004026lsm58797.368ENSRBIG00000030340-8497.368Rhinopithecus_bieti
ENSMMOG00000004026lsm58797.368ENSRBIG00000027803-10096.774Rhinopithecus_bieti
ENSMMOG00000004026lsm58796.053ENSRBIG00000024431-8496.053Rhinopithecus_bieti
ENSMMOG00000004026lsm58797.368ENSRROG00000042782-10096.774Rhinopithecus_roxellana
ENSMMOG00000004026lsm58797.368ENSRROG00000023884-8497.368Rhinopithecus_roxellana
ENSMMOG00000004026lsm58797.368ENSRROG00000004655-8497.368Rhinopithecus_roxellana
ENSMMOG00000004026lsm58348.052YER146W-8348.052Saccharomyces_cerevisiae
ENSMMOG00000004026lsm57586.154ENSSBOG00000034794-8186.154Saimiri_boliviensis_boliviensis
ENSMMOG00000004026lsm58796.053ENSSBOG00000019124-8496.053Saimiri_boliviensis_boliviensis
ENSMMOG00000004026lsm58797.368ENSSBOG00000012312LSM58497.368Saimiri_boliviensis_boliviensis
ENSMMOG00000004026lsm58798.684ENSSFOG00015010099lsm58498.684Scleropages_formosus
ENSMMOG00000004026lsm55295.556ENSSMAG00000007895lsm57695.556Scophthalmus_maximus
ENSMMOG00000004026lsm571100.000ENSSDUG00000010762lsm5100100.000Seriola_dumerili
ENSMMOG00000004026lsm58377.778ENSSLDG00000008014-8677.778Seriola_lalandi_dorsalis
ENSMMOG00000004026lsm587100.000ENSSLDG00000025242lsm584100.000Seriola_lalandi_dorsalis
ENSMMOG00000004026lsm58764.474ENSSARG00000003330LSM58464.474Sorex_araneus
ENSMMOG00000004026lsm58796.053ENSSPUG00000002690LSM510095.161Sphenodon_punctatus
ENSMMOG00000004026lsm55295.556ENSSPAG00000005435lsm57695.556Stegastes_partitus
ENSMMOG00000004026lsm55988.235ENSSSCG00000029661-8581.967Sus_scrofa
ENSMMOG00000004026lsm58797.368ENSSSCG00000026064-8497.368Sus_scrofa
ENSMMOG00000004026lsm58797.368ENSTGUG00000017539LSM58497.368Taeniopygia_guttata
ENSMMOG00000004026lsm57788.889ENSTRUG00000017749lsm55688.889Takifugu_rubripes
ENSMMOG00000004026lsm58798.684ENSTNIG00000008695lsm58698.684Tetraodon_nigroviridis
ENSMMOG00000004026lsm58797.368ENSTBEG00000004876LSM58497.368Tupaia_belangeri
ENSMMOG00000004026lsm58797.368ENSTTRG00000004237LSM58497.368Tursiops_truncatus
ENSMMOG00000004026lsm58697.333ENSUMAG00000002625LSM55497.333Ursus_maritimus
ENSMMOG00000004026lsm58797.368ENSVPAG00000009985LSM58497.368Vicugna_pacos
ENSMMOG00000004026lsm58797.368ENSVVUG00000021311LSM58497.368Vulpes_vulpes
ENSMMOG00000004026lsm57797.015ENSXETG00000026465lsm58297.015Xenopus_tropicalis
ENSMMOG00000004026lsm571100.000ENSXCOG00000015348lsm5100100.000Xiphophorus_couchianus
ENSMMOG00000004026lsm587100.000ENSXMAG00000029988lsm584100.000Xiphophorus_maculatus

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