EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMMOG00000004183 (Gene tree)
Gene ID: -
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Mola_mola
Status: putative
Strand: Minus strand
Length: 2623 bases
Position: chrKV751335.1:2154731-2157353
Accession: ZDB-GENE-040426-1630
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMOP00000005262	Smg4_UPF3	PF03467.15	2.2e-42	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMOT00000005357	-	1359	-	ENSMMOP00000005262	452 (aa)	-	-

Gene Model

Click here to download ENSMMOG00000004183's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMMOG00000004183's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMOG00000004183	upf3b	96	54.762	ENSG00000125351	UPF3B	96	63.981	Homo_sapiens
ENSMMOG00000004183	upf3b	100	81.917	ENSAPOG00000012775	upf3b	100	81.481	Acanthochromis_polyacanthus
ENSMMOG00000004183	upf3b	96	55.940	ENSAMEG00000000163	UPF3B	96	54.762	Ailuropoda_melanoleuca
ENSMMOG00000004183	upf3b	100	78.834	ENSACIG00000013582	upf3b	100	79.482	Amphilophus_citrinellus
ENSMMOG00000004183	upf3b	100	80.349	ENSAOCG00000000706	upf3b	100	81.004	Amphiprion_ocellaris
ENSMMOG00000004183	upf3b	100	80.828	ENSAPEG00000005545	upf3b	100	81.046	Amphiprion_percula
ENSMMOG00000004183	upf3b	100	81.034	ENSATEG00000018742	upf3b	100	81.250	Anabas_testudineus
ENSMMOG00000004183	upf3b	98	57.906	ENSACAG00000003625	UPF3B	98	56.103	Anolis_carolinensis
ENSMMOG00000004183	upf3b	89	44.769	ENSACAG00000001540	UPF3A	96	44.417	Anolis_carolinensis
ENSMMOG00000004183	upf3b	96	51.836	ENSANAG00000025598	-	93	59.649	Aotus_nancymaae
ENSMMOG00000004183	upf3b	96	55.292	ENSANAG00000021894	-	91	66.497	Aotus_nancymaae
ENSMMOG00000004183	upf3b	100	79.393	ENSACLG00000001649	upf3b	100	79.393	Astatotilapia_calliptera
ENSMMOG00000004183	upf3b	70	80.769	ENSAMXG00000000199	upf3b	100	79.615	Astyanax_mexicanus
ENSMMOG00000004183	upf3b	61	59.868	ENSBTAG00000035615	UPF3B	68	63.208	Bos_taurus
ENSMMOG00000004183	upf3b	96	55.292	ENSCJAG00000004975	UPF3B	91	65.990	Callithrix_jacchus
ENSMMOG00000004183	upf3b	96	55.508	ENSCAFG00000018426	UPF3B	98	54.545	Canis_familiaris
ENSMMOG00000004183	upf3b	96	54.860	ENSCAFG00020004074	UPF3B	96	53.996	Canis_lupus_dingo
ENSMMOG00000004183	upf3b	96	53.992	ENSCHIG00000000247	-	96	53.263	Capra_hircus
ENSMMOG00000004183	upf3b	96	53.992	ENSCHIG00000018011	-	99	53.263	Capra_hircus
ENSMMOG00000004183	upf3b	96	54.860	ENSTSYG00000014690	UPF3B	100	51.802	Carlito_syrichta
ENSMMOG00000004183	upf3b	96	38.717	ENSCCAG00000029813	-	50	59.091	Cebus_capucinus
ENSMMOG00000004183	upf3b	96	54.762	ENSCATG00000017506	UPF3B	91	66.497	Cercocebus_atys
ENSMMOG00000004183	upf3b	96	55.965	ENSCLAG00000003260	UPF3B	96	55.022	Chinchilla_lanigera
ENSMMOG00000004183	upf3b	96	53.263	ENSCSAG00000018348	UPF3B	97	52.500	Chlorocebus_sabaeus
ENSMMOG00000004183	upf3b	94	57.631	ENSCPBG00000020685	UPF3B	93	58.050	Chrysemys_picta_bellii
ENSMMOG00000004183	upf3b	61	59.868	ENSCANG00000029220	UPF3B	66	63.679	Colobus_angolensis_palliatus
ENSMMOG00000004183	upf3b	69	52.568	ENSCGRG00001013643	-	82	54.902	Cricetulus_griseus_chok1gshd
ENSMMOG00000004183	upf3b	94	54.260	ENSCGRG00001006858	-	83	56.818	Cricetulus_griseus_chok1gshd
ENSMMOG00000004183	upf3b	86	57.761	ENSCGRG00000007627	Upf3b	93	56.633	Cricetulus_griseus_crigri
ENSMMOG00000004183	upf3b	99	73.529	ENSCSEG00000002046	upf3b	99	73.319	Cynoglossus_semilaevis
ENSMMOG00000004183	upf3b	100	75.217	ENSCVAG00000005030	upf3b	100	75.217	Cyprinodon_variegatus
ENSMMOG00000004183	upf3b	94	67.735	ENSDARG00000000489	upf3b	99	65.525	Danio_rerio
ENSMMOG00000004183	upf3b	94	54.762	ENSDNOG00000008665	UPF3B	93	53.796	Dasypus_novemcinctus
ENSMMOG00000004183	upf3b	94	55.830	ENSDORG00000006077	Upf3b	93	55.281	Dipodomys_ordii
ENSMMOG00000004183	upf3b	96	55.508	ENSEASG00005012919	UPF3B	93	61.404	Equus_asinus_asinus
ENSMMOG00000004183	upf3b	96	55.508	ENSECAG00000016947	UPF3B	96	54.762	Equus_caballus
ENSMMOG00000004183	upf3b	99	64.050	ENSELUG00000020389	upf3b	100	66.392	Esox_lucius
ENSMMOG00000004183	upf3b	62	62.416	ENSFCAG00000004388	UPF3B	96	54.329	Felis_catus
ENSMMOG00000004183	upf3b	98	54.326	ENSFALG00000001569	UPF3B	96	53.131	Ficedula_albicollis
ENSMMOG00000004183	upf3b	96	57.235	ENSFDAG00000018869	UPF3B	96	55.195	Fukomys_damarensis
ENSMMOG00000004183	upf3b	100	75.325	ENSFHEG00000017895	upf3b	100	75.108	Fundulus_heteroclitus
ENSMMOG00000004183	upf3b	100	66.879	ENSGMOG00000001621	upf3b	100	67.091	Gadus_morhua
ENSMMOG00000004183	upf3b	98	55.414	ENSGALG00000008618	UPF3B	99	55.975	Gallus_gallus
ENSMMOG00000004183	upf3b	100	77.024	ENSGAFG00000000829	upf3b	100	76.586	Gambusia_affinis
ENSMMOG00000004183	upf3b	100	74.082	ENSGACG00000017435	upf3b	94	84.436	Gasterosteus_aculeatus
ENSMMOG00000004183	upf3b	94	59.773	ENSGAGG00000001219	UPF3B	94	59.410	Gopherus_agassizii
ENSMMOG00000004183	upf3b	96	54.762	ENSGGOG00000023995	UPF3B	97	53.961	Gorilla_gorilla
ENSMMOG00000004183	upf3b	100	78.959	ENSHBUG00000017393	upf3b	100	78.959	Haplochromis_burtoni
ENSMMOG00000004183	upf3b	96	55.724	ENSHGLG00000019582	-	97	54.818	Heterocephalus_glaber_female
ENSMMOG00000004183	upf3b	67	55.728	ENSHGLG00000011189	-	73	54.221	Heterocephalus_glaber_female
ENSMMOG00000004183	upf3b	67	55.728	ENSHGLG00100001889	-	75	54.167	Heterocephalus_glaber_male
ENSMMOG00000004183	upf3b	96	52.851	ENSHGLG00100002042	-	96	53.348	Heterocephalus_glaber_male
ENSMMOG00000004183	upf3b	100	68.817	ENSHCOG00000017004	upf3b	100	69.165	Hippocampus_comes
ENSMMOG00000004183	upf3b	99	68.966	ENSIPUG00000019249	upf3b	100	68.455	Ictalurus_punctatus
ENSMMOG00000004183	upf3b	96	54.506	ENSSTOG00000001101	UPF3B	96	53.548	Ictidomys_tridecemlineatus
ENSMMOG00000004183	upf3b	94	54.343	ENSJJAG00000000053	Upf3b	85	54.501	Jaculus_jaculus
ENSMMOG00000004183	upf3b	100	79.039	ENSKMAG00000020300	upf3b	100	78.603	Kryptolebias_marmoratus
ENSMMOG00000004183	upf3b	62	84.173	ENSLBEG00000028689	upf3b	59	84.444	Labrus_bergylta
ENSMMOG00000004183	upf3b	100	55.624	ENSLACG00000008691	UPF3B	100	57.203	Latimeria_chalumnae
ENSMMOG00000004183	upf3b	93	49.061	ENSLOCG00000002665	upf3a	88	47.156	Lepisosteus_oculatus
ENSMMOG00000004183	upf3b	96	62.929	ENSLOCG00000015238	upf3b	100	63.537	Lepisosteus_oculatus
ENSMMOG00000004183	upf3b	96	55.217	ENSLAFG00000001267	UPF3B	96	54.466	Loxodonta_africana
ENSMMOG00000004183	upf3b	96	54.545	ENSMFAG00000045414	UPF3B	91	66.497	Macaca_fascicularis
ENSMMOG00000004183	upf3b	96	54.545	ENSMMUG00000020222	UPF3B	91	66.497	Macaca_mulatta
ENSMMOG00000004183	upf3b	96	54.545	ENSMNEG00000039794	UPF3B	91	66.497	Macaca_nemestrina
ENSMMOG00000004183	upf3b	96	54.762	ENSMLEG00000010999	UPF3B	91	66.497	Mandrillus_leucophaeus
ENSMMOG00000004183	upf3b	100	75.869	ENSMAMG00000020069	upf3b	100	76.074	Mastacembelus_armatus
ENSMMOG00000004183	upf3b	92	45.946	ENSMAMG00000018364	upf3a	86	44.009	Mastacembelus_armatus
ENSMMOG00000004183	upf3b	100	79.393	ENSMZEG00005007871	upf3b	100	79.393	Maylandia_zebra
ENSMMOG00000004183	upf3b	83	54.780	ENSMGAG00000007728	UPF3B	98	55.670	Meleagris_gallopavo
ENSMMOG00000004183	upf3b	94	53.258	ENSMAUG00000008705	Upf3b	83	55.388	Mesocricetus_auratus
ENSMMOG00000004183	upf3b	61	59.868	ENSMICG00000001743	UPF3B	90	63.208	Microcebus_murinus
ENSMMOG00000004183	upf3b	94	52.954	ENSMOCG00000017893	Upf3b	83	55.072	Microtus_ochrogaster
ENSMMOG00000004183	upf3b	90	57.933	ENSMODG00000010232	UPF3B	96	56.901	Monodelphis_domestica
ENSMMOG00000004183	upf3b	100	78.017	ENSMALG00000008042	upf3b	100	79.095	Monopterus_albus
ENSMMOG00000004183	upf3b	97	51.193	MGP_CAROLIEiJ_G0032999	Upf3b	93	48.361	Mus_caroli
ENSMMOG00000004183	upf3b	97	52.061	ENSMUSG00000036572	Upf3b	93	48.770	Mus_musculus
ENSMMOG00000004183	upf3b	94	52.915	MGP_PahariEiJ_G0031543	Upf3b	93	49.180	Mus_pahari
ENSMMOG00000004183	upf3b	97	52.061	MGP_SPRETEiJ_G0034152	Upf3b	93	48.770	Mus_spretus
ENSMMOG00000004183	upf3b	96	55.556	ENSMPUG00000001531	UPF3B	98	54.762	Mustela_putorius_furo
ENSMMOG00000004183	upf3b	96	55.724	ENSMLUG00000010821	UPF3B	96	54.762	Myotis_lucifugus
ENSMMOG00000004183	upf3b	96	52.268	ENSNGAG00000008231	Upf3b	86	53.753	Nannospalax_galili
ENSMMOG00000004183	upf3b	91	56.941	ENSNLEG00000014897	UPF3B	87	55.502	Nomascus_leucogenys
ENSMMOG00000004183	upf3b	96	55.022	ENSODEG00000002186	-	95	53.744	Octodon_degus
ENSMMOG00000004183	upf3b	100	79.399	ENSONIG00000002536	upf3b	100	80.043	Oreochromis_niloticus
ENSMMOG00000004183	upf3b	96	54.202	ENSOCUG00000010213	UPF3B	86	54.930	Oryctolagus_cuniculus
ENSMMOG00000004183	upf3b	92	51.152	ENSORLG00000010911	upf3a	86	46.283	Oryzias_latipes
ENSMMOG00000004183	upf3b	100	73.203	ENSORLG00000001026	upf3b	100	73.420	Oryzias_latipes
ENSMMOG00000004183	upf3b	92	49.767	ENSORLG00020014317	upf3a	86	50.120	Oryzias_latipes_hni
ENSMMOG00000004183	upf3b	100	72.985	ENSORLG00020003758	upf3b	100	76.744	Oryzias_latipes_hni
ENSMMOG00000004183	upf3b	100	73.638	ENSORLG00015012954	upf3b	100	73.420	Oryzias_latipes_hsok
ENSMMOG00000004183	upf3b	100	73.144	ENSOMEG00000014736	upf3b	100	73.203	Oryzias_melastigma
ENSMMOG00000004183	upf3b	96	55.098	ENSOGAG00000004643	-	96	54.329	Otolemur_garnettii
ENSMMOG00000004183	upf3b	94	53.778	ENSOGAG00000033003	-	99	51.820	Otolemur_garnettii
ENSMMOG00000004183	upf3b	96	53.653	ENSOARG00000016051	-	96	52.929	Ovis_aries
ENSMMOG00000004183	upf3b	96	54.762	ENSPPAG00000040390	UPF3B	97	53.961	Pan_paniscus
ENSMMOG00000004183	upf3b	96	55.292	ENSPPRG00000023536	UPF3B	96	54.329	Panthera_pardus
ENSMMOG00000004183	upf3b	96	50.743	ENSPTIG00000015264	UPF3B	96	53.165	Panthera_tigris_altaica
ENSMMOG00000004183	upf3b	96	54.762	ENSPTRG00000022228	UPF3B	97	53.961	Pan_troglodytes
ENSMMOG00000004183	upf3b	96	54.762	ENSPANG00000000900	UPF3B	91	66.497	Papio_anubis
ENSMMOG00000004183	upf3b	99	63.067	ENSPKIG00000019226	upf3b	92	81.690	Paramormyrops_kingsleyae
ENSMMOG00000004183	upf3b	57	60.227	ENSPSIG00000005833	UPF3B	94	60.300	Pelodiscus_sinensis
ENSMMOG00000004183	upf3b	58	80.989	ENSPMGG00000016067	upf3b	95	80.989	Periophthalmus_magnuspinnatus
ENSMMOG00000004183	upf3b	94	53.244	ENSPEMG00000012352	Upf3b	83	56.110	Peromyscus_maniculatus_bairdii
ENSMMOG00000004183	upf3b	92	58.411	ENSPCIG00000028914	UPF3B	86	56.901	Phascolarctos_cinereus
ENSMMOG00000004183	upf3b	93	48.165	ENSPLAG00000011960	upf3a	65	72.566	Poecilia_latipinna
ENSMMOG00000004183	upf3b	100	77.681	ENSPLAG00000019922	upf3b	100	77.243	Poecilia_latipinna
ENSMMOG00000004183	upf3b	100	77.681	ENSPLAG00000005105	upf3b	100	77.243	Poecilia_latipinna
ENSMMOG00000004183	upf3b	59	73.377	ENSPMEG00000000836	upf3a	86	44.804	Poecilia_mexicana
ENSMMOG00000004183	upf3b	100	77.243	ENSPMEG00000023532	upf3b	100	76.805	Poecilia_mexicana
ENSMMOG00000004183	upf3b	57	63.504	ENSPPYG00000020675	-	63	63.679	Pongo_abelii
ENSMMOG00000004183	upf3b	96	53.390	ENSPCAG00000009464	UPF3B	96	52.442	Procavia_capensis
ENSMMOG00000004183	upf3b	96	55.076	ENSPCOG00000021960	UPF3B	97	53.961	Propithecus_coquereli
ENSMMOG00000004183	upf3b	96	44.703	ENSPVAG00000014075	UPF3B	97	43.737	Pteropus_vampyrus
ENSMMOG00000004183	upf3b	100	79.956	ENSPNYG00000009846	upf3b	100	79.521	Pundamilia_nyererei
ENSMMOG00000004183	upf3b	92	46.868	ENSPNAG00000019532	upf3a	87	44.917	Pygocentrus_nattereri
ENSMMOG00000004183	upf3b	99	69.313	ENSPNAG00000021528	upf3b	100	79.537	Pygocentrus_nattereri
ENSMMOG00000004183	upf3b	97	52.278	ENSRNOG00000039994	Upf3b	86	55.072	Rattus_norvegicus
ENSMMOG00000004183	upf3b	80	54.933	ENSRBIG00000037219	UPF3B	96	54.377	Rhinopithecus_bieti
ENSMMOG00000004183	upf3b	96	54.762	ENSRROG00000041031	UPF3B	91	66.497	Rhinopithecus_roxellana
ENSMMOG00000004183	upf3b	96	55.292	ENSSBOG00000019740	UPF3B	93	66.497	Saimiri_boliviensis_boliviensis
ENSMMOG00000004183	upf3b	98	54.054	ENSSHAG00000008634	UPF3B	99	53.027	Sarcophilus_harrisii
ENSMMOG00000004183	upf3b	99	66.740	ENSSFOG00015005614	upf3b	100	65.944	Scleropages_formosus
ENSMMOG00000004183	upf3b	100	75.161	ENSSMAG00000012913	upf3b	100	85.214	Scophthalmus_maximus
ENSMMOG00000004183	upf3b	100	80.952	ENSSDUG00000005682	upf3b	100	82.035	Seriola_dumerili
ENSMMOG00000004183	upf3b	92	44.524	ENSSDUG00000009680	upf3a	64	75.238	Seriola_dumerili
ENSMMOG00000004183	upf3b	100	80.952	ENSSLDG00000003130	upf3b	100	82.251	Seriola_lalandi_dorsalis
ENSMMOG00000004183	upf3b	92	51.270	ENSSARG00000004147	UPF3B	97	53.472	Sorex_araneus
ENSMMOG00000004183	upf3b	98	53.249	ENSSPUG00000013082	UPF3B	99	54.717	Sphenodon_punctatus
ENSMMOG00000004183	upf3b	99	79.386	ENSSPAG00000009989	upf3b	99	79.605	Stegastes_partitus
ENSMMOG00000004183	upf3b	94	55.902	ENSSSCG00000012617	UPF3B	93	55.134	Sus_scrofa
ENSMMOG00000004183	upf3b	91	57.518	ENSTGUG00000003413	UPF3B	96	57.933	Taeniopygia_guttata
ENSMMOG00000004183	upf3b	87	46.766	ENSTGUG00000009493	UPF3A	98	44.169	Taeniopygia_guttata
ENSMMOG00000004183	upf3b	92	48.951	ENSTRUG00000012730	upf3a	83	48.878	Takifugu_rubripes
ENSMMOG00000004183	upf3b	100	78.947	ENSTRUG00000010645	upf3b	100	78.947	Takifugu_rubripes
ENSMMOG00000004183	upf3b	99	67.974	ENSTNIG00000015763	upf3b	100	63.261	Tetraodon_nigroviridis
ENSMMOG00000004183	upf3b	88	44.853	ENSTNIG00000014973	upf3a	97	43.766	Tetraodon_nigroviridis
ENSMMOG00000004183	upf3b	96	55.699	ENSUAMG00000024565	UPF3B	93	59.649	Ursus_americanus
ENSMMOG00000004183	upf3b	88	56.280	ENSUMAG00000002150	UPF3B	87	55.448	Ursus_maritimus
ENSMMOG00000004183	upf3b	81	56.701	ENSVPAG00000009971	UPF3B	95	54.020	Vicugna_pacos
ENSMMOG00000004183	upf3b	96	54.644	ENSVVUG00000011594	UPF3B	94	62.069	Vulpes_vulpes
ENSMMOG00000004183	upf3b	98	50.000	ENSXETG00000007440	upf3b	85	69.543	Xenopus_tropicalis
ENSMMOG00000004183	upf3b	100	70.370	ENSXCOG00000016586	upf3b	95	88.732	Xiphophorus_couchianus
ENSMMOG00000004183	upf3b	100	76.368	ENSXMAG00000013680	upf3b	100	75.930	Xiphophorus_maculatus