EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMMOG00000004352 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Mola_mola
Status: putative
Strand: Plus strand
Length: 12968 bases
Position: chrKV751358.1:604743-617710
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMOP00000005526	RRM_1	PF00076.22	1.8e-33	1	2
ENSMMOP00000005526	RRM_1	PF00076.22	1.8e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMOT00000005623	-	1410	-	ENSMMOP00000005526	469 (aa)	-	-

Gene Model

Click here to download ENSMMOG00000004352's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMMOG00000004352's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMMOG00000004352	pspc1	59	47.273	ENSMMOG00000015503	nono	62	48.675

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMOG00000004352	pspc1	58	52.923	ENSG00000121390	PSPC1	89	53.782	Homo_sapiens
ENSMMOG00000004352	pspc1	71	89.286	ENSAPOG00000015946	pspc1	80	89.286	Acanthochromis_polyacanthus
ENSMMOG00000004352	pspc1	58	52.923	ENSAMEG00000017420	PSPC1	88	43.927	Ailuropoda_melanoleuca
ENSMMOG00000004352	pspc1	72	85.714	ENSACIG00000018695	pspc1	81	85.714	Amphilophus_citrinellus
ENSMMOG00000004352	pspc1	71	85.714	ENSAOCG00000005279	pspc1	80	85.714	Amphiprion_ocellaris
ENSMMOG00000004352	pspc1	71	85.714	ENSAPEG00000015927	pspc1	80	85.714	Amphiprion_percula
ENSMMOG00000004352	pspc1	73	85.714	ENSATEG00000004878	pspc1	81	85.714	Anabas_testudineus
ENSMMOG00000004352	pspc1	57	44.172	ENSAPLG00000003643	SFPQ	50	50.195	Anas_platyrhynchos
ENSMMOG00000004352	pspc1	58	53.374	ENSACAG00000002093	PSPC1	91	43.689	Anolis_carolinensis
ENSMMOG00000004352	pspc1	58	57.372	ENSANAG00000000059	PSPC1	89	52.722	Aotus_nancymaae
ENSMMOG00000004352	pspc1	75	88.889	ENSACLG00000027220	pspc1	90	89.286	Astatotilapia_calliptera
ENSMMOG00000004352	pspc1	61	52.161	ENSAMXG00000036881	pspc1	94	41.541	Astyanax_mexicanus
ENSMMOG00000004352	pspc1	64	56.471	ENSBTAG00000003934	PSPC1	93	44.773	Bos_taurus
ENSMMOG00000004352	pspc1	58	55.449	ENSCJAG00000004554	PSPC1	93	43.665	Callithrix_jacchus
ENSMMOG00000004352	pspc1	58	52.923	ENSCAFG00020002009	PSPC1	90	53.501	Canis_lupus_dingo
ENSMMOG00000004352	pspc1	64	51.275	ENSCHIG00000016708	PSPC1	93	43.487	Capra_hircus
ENSMMOG00000004352	pspc1	59	52.395	ENSCPOG00000000395	PSPC1	90	53.782	Cavia_porcellus
ENSMMOG00000004352	pspc1	58	52.923	ENSCCAG00000033498	PSPC1	93	43.411	Cebus_capucinus
ENSMMOG00000004352	pspc1	59	52.395	ENSCATG00000036434	PSPC1	95	54.942	Cercocebus_atys
ENSMMOG00000004352	pspc1	62	51.163	ENSCHOG00000008913	PSPC1	67	53.276	Choloepus_hoffmanni
ENSMMOG00000004352	pspc1	59	52.537	ENSCPBG00000020859	PSPC1	90	44.000	Chrysemys_picta_bellii
ENSMMOG00000004352	pspc1	53	44.674	ENSCSAVG00000003533	-	55	44.138	Ciona_savignyi
ENSMMOG00000004352	pspc1	58	52.923	ENSCGRG00001018368	Pspc1	88	44.332	Cricetulus_griseus_chok1gshd
ENSMMOG00000004352	pspc1	58	52.923	ENSCGRG00000011724	Pspc1	88	44.332	Cricetulus_griseus_crigri
ENSMMOG00000004352	pspc1	72	78.571	ENSCVAG00000007679	-	82	78.571	Cyprinodon_variegatus
ENSMMOG00000004352	pspc1	98	41.524	ENSDARG00000006621	pspc1	75	86.364	Danio_rerio
ENSMMOG00000004352	pspc1	58	52.744	ENSDNOG00000011078	PSPC1	65	54.493	Dasypus_novemcinctus
ENSMMOG00000004352	pspc1	59	48.810	ENSDORG00000016050	Pspc1	90	41.916	Dipodomys_ordii
ENSMMOG00000004352	pspc1	58	52.923	ENSEASG00005000119	PSPC1	88	54.360	Equus_asinus_asinus
ENSMMOG00000004352	pspc1	58	52.923	ENSECAG00000017286	PSPC1	88	54.360	Equus_caballus
ENSMMOG00000004352	pspc1	63	52.857	ENSELUG00000003746	pspc1	70	81.481	Esox_lucius
ENSMMOG00000004352	pspc1	60	51.479	ENSFCAG00000027841	PSPC1	90	53.501	Felis_catus
ENSMMOG00000004352	pspc1	61	52.786	ENSFALG00000008750	PSPC1	93	43.462	Ficedula_albicollis
ENSMMOG00000004352	pspc1	64	50.281	ENSFDAG00000002617	PSPC1	96	42.667	Fukomys_damarensis
ENSMMOG00000004352	pspc1	53	55.326	ENSGMOG00000015074	pspc1	55	58.304	Gadus_morhua
ENSMMOG00000004352	pspc1	58	54.294	ENSGALG00000017142	PSPC1	90	44.600	Gallus_gallus
ENSMMOG00000004352	pspc1	64	54.775	ENSGAFG00000006327	pspc1	73	56.780	Gambusia_affinis
ENSMMOG00000004352	pspc1	59	58.912	ENSGACG00000014901	pspc1	98	59.659	Gasterosteus_aculeatus
ENSMMOG00000004352	pspc1	59	52.537	ENSGAGG00000019164	PSPC1	90	44.000	Gopherus_agassizii
ENSMMOG00000004352	pspc1	58	52.923	ENSGGOG00000003414	PSPC1	89	53.782	Gorilla_gorilla
ENSMMOG00000004352	pspc1	71	88.889	ENSHBUG00000001139	pspc1	81	89.286	Haplochromis_burtoni
ENSMMOG00000004352	pspc1	64	50.418	ENSHGLG00000018811	PSPC1	94	42.803	Heterocephalus_glaber_female
ENSMMOG00000004352	pspc1	62	57.303	ENSHCOG00000013251	pspc1	64	63.542	Hippocampus_comes
ENSMMOG00000004352	pspc1	65	52.486	ENSIPUG00000013192	pspc1	74	52.185	Ictalurus_punctatus
ENSMMOG00000004352	pspc1	61	51.754	ENSSTOG00000026833	PSPC1	89	53.501	Ictidomys_tridecemlineatus
ENSMMOG00000004352	pspc1	58	52.615	ENSJJAG00000018334	Pspc1	92	43.050	Jaculus_jaculus
ENSMMOG00000004352	pspc1	61	85.714	ENSKMAG00000013525	-	72	85.714	Kryptolebias_marmoratus
ENSMMOG00000004352	pspc1	71	85.714	ENSLBEG00000004474	pspc1	81	85.714	Labrus_bergylta
ENSMMOG00000004352	pspc1	65	52.815	ENSLOCG00000010832	pspc1	82	51.790	Lepisosteus_oculatus
ENSMMOG00000004352	pspc1	61	51.462	ENSLAFG00000010968	PSPC1	91	43.249	Loxodonta_africana
ENSMMOG00000004352	pspc1	58	52.923	ENSMFAG00000032728	PSPC1	96	54.651	Macaca_fascicularis
ENSMMOG00000004352	pspc1	60	52.083	ENSMMUG00000020262	PSPC1	93	54.624	Macaca_mulatta
ENSMMOG00000004352	pspc1	58	52.923	ENSMNEG00000027401	PSPC1	88	43.927	Macaca_nemestrina
ENSMMOG00000004352	pspc1	66	85.714	ENSMAMG00000004333	pspc1	74	85.714	Mastacembelus_armatus
ENSMMOG00000004352	pspc1	75	88.889	ENSMZEG00005005726	pspc1	90	89.286	Maylandia_zebra
ENSMMOG00000004352	pspc1	58	57.692	ENSMAUG00000021067	Pspc1	69	57.692	Mesocricetus_auratus
ENSMMOG00000004352	pspc1	61	51.603	ENSMICG00000013970	PSPC1	87	54.839	Microcebus_murinus
ENSMMOG00000004352	pspc1	59	52.083	ENSMOCG00000006060	Pspc1	90	44.356	Microtus_ochrogaster
ENSMMOG00000004352	pspc1	62	50.862	ENSMODG00000008029	PSPC1	55	53.890	Monodelphis_domestica
ENSMMOG00000004352	pspc1	74	89.286	ENSMALG00000008914	pspc1	85	89.286	Monopterus_albus
ENSMMOG00000004352	pspc1	59	51.929	MGP_CAROLIEiJ_G0019341	Pspc1	81	68.085	Mus_caroli
ENSMMOG00000004352	pspc1	59	51.929	ENSMUSG00000021938	Pspc1	80	68.085	Mus_musculus
ENSMMOG00000004352	pspc1	59	51.929	MGP_PahariEiJ_G0030359	Pspc1	81	68.085	Mus_pahari
ENSMMOG00000004352	pspc1	59	51.929	MGP_SPRETEiJ_G0020232	Pspc1	81	68.085	Mus_spretus
ENSMMOG00000004352	pspc1	58	52.923	ENSMPUG00000013347	PSPC1	94	42.803	Mustela_putorius_furo
ENSMMOG00000004352	pspc1	58	52.439	ENSMLUG00000017663	PSPC1	88	43.611	Myotis_lucifugus
ENSMMOG00000004352	pspc1	58	52.923	ENSNGAG00000011271	Pspc1	88	44.694	Nannospalax_galili
ENSMMOG00000004352	pspc1	70	58.231	ENSNBRG00000014059	pspc1	96	58.519	Neolamprologus_brichardi
ENSMMOG00000004352	pspc1	58	52.923	ENSNLEG00000001294	PSPC1	93	43.130	Nomascus_leucogenys
ENSMMOG00000004352	pspc1	59	53.231	ENSODEG00000019012	-	66	49.711	Octodon_degus
ENSMMOG00000004352	pspc1	59	57.516	ENSODEG00000007817	-	93	43.825	Octodon_degus
ENSMMOG00000004352	pspc1	71	88.889	ENSONIG00000012010	pspc1	81	89.286	Oreochromis_niloticus
ENSMMOG00000004352	pspc1	64	45.349	ENSOANG00000011381	-	69	45.349	Ornithorhynchus_anatinus
ENSMMOG00000004352	pspc1	58	52.923	ENSOCUG00000006153	PSPC1	92	43.212	Oryctolagus_cuniculus
ENSMMOG00000004352	pspc1	65	71.429	ENSORLG00000004232	-	73	71.429	Oryzias_latipes
ENSMMOG00000004352	pspc1	65	71.429	ENSORLG00020000578	PSPC1	81	71.429	Oryzias_latipes_hni
ENSMMOG00000004352	pspc1	65	75.000	ENSORLG00015017480	pspc1	81	75.000	Oryzias_latipes_hsok
ENSMMOG00000004352	pspc1	58	52.923	ENSOGAG00000012643	PSPC1	92	43.411	Otolemur_garnettii
ENSMMOG00000004352	pspc1	59	52.367	ENSOARG00000014163	PSPC1	98	43.393	Ovis_aries
ENSMMOG00000004352	pspc1	59	53.583	ENSPPAG00000009836	PSPC1	92	56.615	Pan_paniscus
ENSMMOG00000004352	pspc1	58	52.923	ENSPPRG00000008833	PSPC1	94	42.803	Panthera_pardus
ENSMMOG00000004352	pspc1	58	54.487	ENSPTRG00000005677	PSPC1	89	53.782	Pan_troglodytes
ENSMMOG00000004352	pspc1	58	52.923	ENSPANG00000001992	PSPC1	94	54.942	Papio_anubis
ENSMMOG00000004352	pspc1	66	54.521	ENSPKIG00000003578	pspc1	69	57.025	Paramormyrops_kingsleyae
ENSMMOG00000004352	pspc1	60	52.507	ENSPSIG00000005168	PSPC1	90	44.200	Pelodiscus_sinensis
ENSMMOG00000004352	pspc1	55	55.298	ENSPMGG00000015135	pspc1	75	58.824	Periophthalmus_magnuspinnatus
ENSMMOG00000004352	pspc1	59	52.083	ENSPEMG00000015214	Pspc1	90	44.158	Peromyscus_maniculatus_bairdii
ENSMMOG00000004352	pspc1	51	34.722	ENSPMAG00000004618	pspc1	87	34.722	Petromyzon_marinus
ENSMMOG00000004352	pspc1	62	50.862	ENSPCIG00000017680	PSPC1	92	43.050	Phascolarctos_cinereus
ENSMMOG00000004352	pspc1	62	54.986	ENSPFOG00000003362	pspc1	74	71.429	Poecilia_formosa
ENSMMOG00000004352	pspc1	65	50.882	ENSPLAG00000011540	pspc1	82	71.429	Poecilia_latipinna
ENSMMOG00000004352	pspc1	65	50.630	ENSPMEG00000008322	pspc1	82	71.429	Poecilia_mexicana
ENSMMOG00000004352	pspc1	65	50.630	ENSPREG00000007786	pspc1	82	75.000	Poecilia_reticulata
ENSMMOG00000004352	pspc1	58	52.923	ENSPPYG00000005186	PSPC1	73	54.519	Pongo_abelii
ENSMMOG00000004352	pspc1	62	51.724	ENSPCOG00000014364	PSPC1	70	53.631	Propithecus_coquereli
ENSMMOG00000004352	pspc1	58	52.439	ENSPVAG00000005036	PSPC1	66	54.971	Pteropus_vampyrus
ENSMMOG00000004352	pspc1	75	88.889	ENSPNYG00000008893	pspc1	90	89.286	Pundamilia_nyererei
ENSMMOG00000004352	pspc1	71	47.630	ENSPNAG00000016511	pspc1	93	43.750	Pygocentrus_nattereri
ENSMMOG00000004352	pspc1	62	51.453	ENSRNOG00000020782	Pspc1	93	43.429	Rattus_norvegicus
ENSMMOG00000004352	pspc1	62	51.734	ENSRBIG00000036057	PSPC1	96	54.651	Rhinopithecus_bieti
ENSMMOG00000004352	pspc1	61	51.884	ENSRROG00000036334	PSPC1	87	54.651	Rhinopithecus_roxellana
ENSMMOG00000004352	pspc1	62	54.598	ENSSHAG00000004696	PSPC1	91	43.545	Sarcophilus_harrisii
ENSMMOG00000004352	pspc1	58	61.076	ENSSFOG00015001395	pspc1	69	60.883	Scleropages_formosus
ENSMMOG00000004352	pspc1	71	78.571	ENSSMAG00000001761	pspc1	86	61.561	Scophthalmus_maximus
ENSMMOG00000004352	pspc1	71	89.286	ENSSDUG00000010651	pspc1	100	48.050	Seriola_dumerili
ENSMMOG00000004352	pspc1	71	96.296	ENSSLDG00000004284	pspc1	85	96.429	Seriola_lalandi_dorsalis
ENSMMOG00000004352	pspc1	58	55.418	ENSSARG00000000888	PSPC1	88	43.033	Sorex_araneus
ENSMMOG00000004352	pspc1	62	54.839	ENSSPUG00000008550	PSPC1	93	45.040	Sphenodon_punctatus
ENSMMOG00000004352	pspc1	71	89.286	ENSSPAG00000001921	pspc1	79	89.286	Stegastes_partitus
ENSMMOG00000004352	pspc1	58	53.231	ENSSSCG00000009569	PSPC1	91	53.186	Sus_scrofa
ENSMMOG00000004352	pspc1	58	54.294	ENSTGUG00000011295	PSPC1	99	45.214	Taeniopygia_guttata
ENSMMOG00000004352	pspc1	71	82.143	ENSTRUG00000011335	pspc1	81	85.185	Takifugu_rubripes
ENSMMOG00000004352	pspc1	71	89.286	ENSTNIG00000010358	pspc1	83	89.286	Tetraodon_nigroviridis
ENSMMOG00000004352	pspc1	58	46.154	ENSTBEG00000002361	PSPC1	63	49.536	Tupaia_belangeri
ENSMMOG00000004352	pspc1	61	51.445	ENSTTRG00000003343	PSPC1	93	43.048	Tursiops_truncatus
ENSMMOG00000004352	pspc1	58	52.923	ENSUMAG00000013993	PSPC1	90	56.347	Ursus_maritimus
ENSMMOG00000004352	pspc1	60	51.479	ENSVVUG00000006414	PSPC1	91	53.611	Vulpes_vulpes
ENSMMOG00000004352	pspc1	67	51.741	ENSXCOG00000017438	pspc1	95	53.500	Xiphophorus_couchianus
ENSMMOG00000004352	pspc1	67	51.741	ENSXMAG00000007929	pspc1	95	53.500	Xiphophorus_maculatus