EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMMOG00000006148 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Mola_mola
Status: putative
Strand: Plus strand
Length: 11607 bases
Position: chrKV751338.1:581557-593163
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMOP00000007915	ResIII	PF04851.15	1.5e-12	1	1
ENSMMOP00000007918	ResIII	PF04851.15	9.6e-12	1	1
ENSMMOP00000007914	ResIII	PF04851.15	5.4e-10	1	1
ENSMMOP00000007915	DEAD	PF00270.29	2.3e-27	1	1
ENSMMOP00000007918	DEAD	PF00270.29	1.2e-26	1	1
ENSMMOP00000007914	DEAD	PF00270.29	4.4e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMOT00000008061	-	2589	-	ENSMMOP00000007914	863 (aa)	-	-
ENSMMOT00000008062	-	897	-	ENSMMOP00000007915	298 (aa)	-	-
ENSMMOT00000008065	-	2709	-	ENSMMOP00000007918	902 (aa)	-	-

Gene Model

Click here to download ENSMMOG00000006148's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMMOG00000006148's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMMOG00000006148	hfm1	75	32.182	ENSMMOG00000003198	ascc3	62	32.182
ENSMMOG00000006148	hfm1	83	30.493	ENSMMOG00000014167	snrnp200	65	30.493

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMOG00000006148	hfm1	96	64.426	ENSG00000162669	HFM1	62	64.350	Homo_sapiens
ENSMMOG00000006148	hfm1	99	87.123	ENSAPOG00000005304	hfm1	100	87.123	Acanthochromis_polyacanthus
ENSMMOG00000006148	hfm1	96	64.037	ENSAMEG00000000432	HFM1	62	64.045	Ailuropoda_melanoleuca
ENSMMOG00000006148	hfm1	95	83.659	ENSACIG00000021553	hfm1	80	83.659	Amphilophus_citrinellus
ENSMMOG00000006148	hfm1	99	88.065	ENSAOCG00000022839	hfm1	100	88.065	Amphiprion_ocellaris
ENSMMOG00000006148	hfm1	99	88.256	ENSAPEG00000014316	hfm1	100	88.256	Amphiprion_percula
ENSMMOG00000006148	hfm1	93	85.919	ENSATEG00000019181	hfm1	73	82.747	Anabas_testudineus
ENSMMOG00000006148	hfm1	95	64.269	ENSAPLG00000013639	HFM1	62	64.045	Anas_platyrhynchos
ENSMMOG00000006148	hfm1	95	63.711	ENSANAG00000029513	HFM1	62	64.638	Aotus_nancymaae
ENSMMOG00000006148	hfm1	99	82.634	ENSACLG00000009033	hfm1	100	82.634	Astatotilapia_calliptera
ENSMMOG00000006148	hfm1	99	75.000	ENSAMXG00000006108	hfm1	63	75.000	Astyanax_mexicanus
ENSMMOG00000006148	hfm1	96	64.576	ENSBTAG00000020856	HFM1	62	64.013	Bos_taurus
ENSMMOG00000006148	hfm1	96	63.879	ENSCJAG00000001843	HFM1	62	63.453	Callithrix_jacchus
ENSMMOG00000006148	hfm1	96	63.647	ENSCAFG00000020187	HFM1	62	63.524	Canis_familiaris
ENSMMOG00000006148	hfm1	95	64.617	ENSTSYG00000014250	HFM1	62	64.054	Carlito_syrichta
ENSMMOG00000006148	hfm1	95	64.186	ENSCPOG00000007421	HFM1	64	63.341	Cavia_porcellus
ENSMMOG00000006148	hfm1	96	63.647	ENSCCAG00000033206	HFM1	62	63.117	Cebus_capucinus
ENSMMOG00000006148	hfm1	93	64.727	ENSCATG00000030987	HFM1	62	63.565	Cercocebus_atys
ENSMMOG00000006148	hfm1	95	65.485	ENSCLAG00000005173	HFM1	58	65.485	Chinchilla_lanigera
ENSMMOG00000006148	hfm1	76	53.147	ENSCSAVG00000005094	-	100	53.147	Ciona_savignyi
ENSMMOG00000006148	hfm1	67	72.139	ENSCANG00000034052	-	56	70.335	Colobus_angolensis_palliatus
ENSMMOG00000006148	hfm1	91	60.000	ENSCGRG00001016995	Hfm1	62	60.000	Cricetulus_griseus_chok1gshd
ENSMMOG00000006148	hfm1	95	62.993	ENSCGRG00000017181	Hfm1	62	62.220	Cricetulus_griseus_crigri
ENSMMOG00000006148	hfm1	92	81.280	ENSCSEG00000017659	hfm1	84	76.645	Cynoglossus_semilaevis
ENSMMOG00000006148	hfm1	78	82.278	ENSCVAG00000005075	hfm1	86	82.278	Cyprinodon_variegatus
ENSMMOG00000006148	hfm1	99	74.213	ENSDARG00000104288	hfm1	82	74.213	Danio_rerio
ENSMMOG00000006148	hfm1	96	63.457	ENSDNOG00000004776	HFM1	60	63.811	Dasypus_novemcinctus
ENSMMOG00000006148	hfm1	95	62.073	ENSDORG00000014661	Hfm1	63	61.555	Dipodomys_ordii
ENSMMOG00000006148	hfm1	68	62.019	ENSEBUG00000006133	-	91	62.299	Eptatretus_burgeri
ENSMMOG00000006148	hfm1	92	66.390	ENSEASG00005015424	HFM1	84	66.390	Equus_asinus_asinus
ENSMMOG00000006148	hfm1	97	64.220	ENSECAG00000024039	HFM1	60	64.126	Equus_caballus
ENSMMOG00000006148	hfm1	100	78.136	ENSELUG00000018944	hfm1	99	78.136	Esox_lucius
ENSMMOG00000006148	hfm1	96	63.921	ENSFCAG00000029116	HFM1	62	63.749	Felis_catus
ENSMMOG00000006148	hfm1	93	65.950	ENSFALG00000001781	HFM1	62	64.221	Ficedula_albicollis
ENSMMOG00000006148	hfm1	95	64.843	ENSFDAG00000020816	HFM1	60	64.126	Fukomys_damarensis
ENSMMOG00000006148	hfm1	92	74.393	ENSGMOG00000017436	hfm1	93	70.917	Gadus_morhua
ENSMMOG00000006148	hfm1	98	81.882	ENSGAFG00000018093	hfm1	100	81.882	Gambusia_affinis
ENSMMOG00000006148	hfm1	92	81.068	ENSGACG00000015686	hfm1	93	76.812	Gasterosteus_aculeatus
ENSMMOG00000006148	hfm1	66	73.000	ENSGAGG00000025197	-	89	55.814	Gopherus_agassizii
ENSMMOG00000006148	hfm1	96	64.311	ENSGGOG00000038524	HFM1	62	64.126	Gorilla_gorilla
ENSMMOG00000006148	hfm1	95	81.029	ENSHBUG00000007309	hfm1	83	81.029	Haplochromis_burtoni
ENSMMOG00000006148	hfm1	98	79.127	ENSHCOG00000019632	hfm1	100	79.127	Hippocampus_comes
ENSMMOG00000006148	hfm1	99	74.312	ENSIPUG00000017020	hfm1	99	74.312	Ictalurus_punctatus
ENSMMOG00000006148	hfm1	96	63.384	ENSJJAG00000017198	Hfm1	64	62.332	Jaculus_jaculus
ENSMMOG00000006148	hfm1	94	80.774	ENSKMAG00000002282	hfm1	91	80.774	Kryptolebias_marmoratus
ENSMMOG00000006148	hfm1	99	85.417	ENSLBEG00000006759	hfm1	100	85.417	Labrus_bergylta
ENSMMOG00000006148	hfm1	95	64.984	ENSLACG00000010698	HFM1	86	64.874	Latimeria_chalumnae
ENSMMOG00000006148	hfm1	94	72.674	ENSLOCG00000004931	hfm1	83	70.234	Lepisosteus_oculatus
ENSMMOG00000006148	hfm1	78	65.050	ENSLAFG00000015903	-	94	65.050	Loxodonta_africana
ENSMMOG00000006148	hfm1	96	61.628	ENSMFAG00000003649	HFM1	62	60.758	Macaca_fascicularis
ENSMMOG00000006148	hfm1	96	63.847	ENSMMUG00000006819	HFM1	62	63.677	Macaca_mulatta
ENSMMOG00000006148	hfm1	66	72.362	ENSMNEG00000039833	-	60	67.105	Macaca_nemestrina
ENSMMOG00000006148	hfm1	66	72.362	ENSMLEG00000027571	-	56	70.335	Mandrillus_leucophaeus
ENSMMOG00000006148	hfm1	99	83.935	ENSMAMG00000004623	hfm1	100	83.935	Mastacembelus_armatus
ENSMMOG00000006148	hfm1	99	82.634	ENSMZEG00005004679	hfm1	100	82.634	Maylandia_zebra
ENSMMOG00000006148	hfm1	85	63.708	ENSMGAG00000008437	HFM1	93	66.222	Meleagris_gallopavo
ENSMMOG00000006148	hfm1	96	62.950	ENSMAUG00000018858	Hfm1	62	62.065	Mesocricetus_auratus
ENSMMOG00000006148	hfm1	96	64.079	ENSMICG00000037935	HFM1	62	64.013	Microcebus_murinus
ENSMMOG00000006148	hfm1	96	63.457	ENSMOCG00000014812	Hfm1	62	62.668	Microtus_ochrogaster
ENSMMOG00000006148	hfm1	99	87.442	ENSMALG00000002401	hfm1	100	87.442	Monopterus_albus
ENSMMOG00000006148	hfm1	85	72.034	MGP_CAROLIEiJ_G0027496	Hfm1	58	72.034	Mus_caroli
ENSMMOG00000006148	hfm1	96	63.066	ENSMUSG00000043410	Hfm1	62	62.177	Mus_musculus
ENSMMOG00000006148	hfm1	96	63.298	MGP_PahariEiJ_G0017268	Hfm1	62	62.290	Mus_pahari
ENSMMOG00000006148	hfm1	96	63.531	MGP_SPRETEiJ_G0028495	Hfm1	62	62.626	Mus_spretus
ENSMMOG00000006148	hfm1	97	63.688	ENSMPUG00000004594	HFM1	60	63.718	Mustela_putorius_furo
ENSMMOG00000006148	hfm1	96	64.617	ENSMLUG00000010200	HFM1	62	63.789	Myotis_lucifugus
ENSMMOG00000006148	hfm1	99	80.626	ENSNBRG00000002910	hfm1	100	80.626	Neolamprologus_brichardi
ENSMMOG00000006148	hfm1	96	62.761	ENSNLEG00000010285	HFM1	63	62.058	Nomascus_leucogenys
ENSMMOG00000006148	hfm1	87	64.744	ENSMEUG00000015788	HFM1	54	64.744	Notamacropus_eugenii
ENSMMOG00000006148	hfm1	96	59.444	ENSOPRG00000013916	HFM1	60	59.444	Ochotona_princeps
ENSMMOG00000006148	hfm1	94	82.901	ENSONIG00000010590	hfm1	86	79.111	Oreochromis_niloticus
ENSMMOG00000006148	hfm1	90	83.312	ENSORLG00000026844	hfm1	100	83.312	Oryzias_latipes
ENSMMOG00000006148	hfm1	99	70.700	ENSORLG00020002951	hfm1	70	70.700	Oryzias_latipes_hni
ENSMMOG00000006148	hfm1	99	78.588	ENSOMEG00000016474	hfm1	66	78.588	Oryzias_melastigma
ENSMMOG00000006148	hfm1	96	64.311	ENSOGAG00000032369	HFM1	73	63.789	Otolemur_garnettii
ENSMMOG00000006148	hfm1	96	64.426	ENSOARG00000015812	HFM1	62	64.126	Ovis_aries
ENSMMOG00000006148	hfm1	96	64.658	ENSPPAG00000024582	HFM1	67	64.574	Pan_paniscus
ENSMMOG00000006148	hfm1	96	63.921	ENSPPRG00000003270	HFM1	62	63.749	Panthera_pardus
ENSMMOG00000006148	hfm1	96	63.921	ENSPTIG00000018881	HFM1	62	63.861	Panthera_tigris_altaica
ENSMMOG00000006148	hfm1	94	65.018	ENSPTRG00000000948	HFM1	62	64.462	Pan_troglodytes
ENSMMOG00000006148	hfm1	93	64.727	ENSPANG00000009838	HFM1	62	63.565	Papio_anubis
ENSMMOG00000006148	hfm1	98	73.678	ENSPKIG00000003810	hfm1	99	73.678	Paramormyrops_kingsleyae
ENSMMOG00000006148	hfm1	92	80.958	ENSPMGG00000011059	hfm1	99	80.958	Periophthalmus_magnuspinnatus
ENSMMOG00000006148	hfm1	96	63.066	ENSPEMG00000022852	Hfm1	62	62.290	Peromyscus_maniculatus_bairdii
ENSMMOG00000006148	hfm1	93	65.119	ENSPCIG00000014233	HFM1	60	63.352	Phascolarctos_cinereus
ENSMMOG00000006148	hfm1	92	80.964	ENSPFOG00000017194	hfm1	85	77.542	Poecilia_formosa
ENSMMOG00000006148	hfm1	92	80.866	ENSPLAG00000000571	hfm1	81	78.114	Poecilia_latipinna
ENSMMOG00000006148	hfm1	92	80.987	ENSPMEG00000019475	hfm1	82	78.315	Poecilia_mexicana
ENSMMOG00000006148	hfm1	98	81.839	ENSPREG00000007803	hfm1	100	81.839	Poecilia_reticulata
ENSMMOG00000006148	hfm1	96	64.426	ENSPPYG00000001163	HFM1	62	64.085	Pongo_abelii
ENSMMOG00000006148	hfm1	96	59.907	ENSPVAG00000009713	HFM1	63	58.520	Pteropus_vampyrus
ENSMMOG00000006148	hfm1	99	82.305	ENSPNYG00000001795	hfm1	100	82.305	Pundamilia_nyererei
ENSMMOG00000006148	hfm1	99	75.300	ENSPNAG00000010865	hfm1	91	75.300	Pygocentrus_nattereri
ENSMMOG00000006148	hfm1	96	63.573	ENSRNOG00000023299	Hfm1	62	62.332	Rattus_norvegicus
ENSMMOG00000006148	hfm1	67	71.642	ENSRBIG00000033899	-	56	69.856	Rhinopithecus_bieti
ENSMMOG00000006148	hfm1	99	64.846	ENSRROG00000045569	HFM1	62	64.846	Rhinopithecus_roxellana
ENSMMOG00000006148	hfm1	96	63.995	ENSSBOG00000027456	HFM1	63	63.453	Saimiri_boliviensis_boliviensis
ENSMMOG00000006148	hfm1	65	69.347	ENSSHAG00000014616	-	67	67.905	Sarcophilus_harrisii
ENSMMOG00000006148	hfm1	100	72.865	ENSSFOG00015020129	hfm1	62	72.865	Scleropages_formosus
ENSMMOG00000006148	hfm1	99	79.766	ENSSMAG00000006907	hfm1	91	79.872	Scophthalmus_maximus
ENSMMOG00000006148	hfm1	99	88.310	ENSSDUG00000011424	hfm1	100	88.310	Seriola_dumerili
ENSMMOG00000006148	hfm1	99	87.816	ENSSLDG00000016386	hfm1	100	87.816	Seriola_lalandi_dorsalis
ENSMMOG00000006148	hfm1	65	72.081	ENSSPUG00000003380	-	52	72.081	Sphenodon_punctatus
ENSMMOG00000006148	hfm1	99	87.269	ENSSPAG00000001023	hfm1	100	87.269	Stegastes_partitus
ENSMMOG00000006148	hfm1	96	65.122	ENSSSCG00000006912	HFM1	65	64.350	Sus_scrofa
ENSMMOG00000006148	hfm1	92	65.343	ENSTGUG00000006172	HFM1	93	63.229	Taeniopygia_guttata
ENSMMOG00000006148	hfm1	69	80.976	ENSTNIG00000006962	hfm1	99	82.083	Tetraodon_nigroviridis
ENSMMOG00000006148	hfm1	96	64.426	ENSTTRG00000013933	HFM1	63	63.626	Tursiops_truncatus
ENSMMOG00000006148	hfm1	96	62.297	ENSVPAG00000011331	HFM1	62	61.883	Vicugna_pacos
ENSMMOG00000006148	hfm1	92	65.755	ENSVVUG00000020760	HFM1	84	65.755	Vulpes_vulpes
ENSMMOG00000006148	hfm1	98	81.703	ENSXMAG00000004178	hfm1	100	81.703	Xiphophorus_maculatus