EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMMOG00000007881 (Gene tree)
Gene ID: -
Gene Symbol: upf1
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Mola_mola
Status: putative
Strand: Plus strand
Length: 12525 bases
Position: chrKV751338.1:1438862-1451386
Accession: ZDB-GENE-040426-2836
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMOP00000010211	UPF1_Zn_bind	PF09416.10	4.6e-75	1	1
ENSMMOP00000010211	ResIII	PF04851.15	2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMOT00000010392	-	3276	-	ENSMMOP00000010211	1091 (aa)	-	-

Gene Model

Click here to download ENSMMOG00000007881's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMMOG00000007881's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMMOG00000007881	upf1	95	90.778	ENSMMOG00000007537	-	99	90.385

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMOG00000007881	upf1	100	90.982	ENSG00000005007	UPF1	100	90.527	Homo_sapiens
ENSMMOG00000007881	upf1	100	92.922	ENSAPOG00000010916	-	100	92.552	Acanthochromis_polyacanthus
ENSMMOG00000007881	upf1	100	96.350	ENSAPOG00000023773	upf1	100	96.350	Acanthochromis_polyacanthus
ENSMMOG00000007881	upf1	100	90.409	ENSAMEG00000011474	UPF1	100	89.956	Ailuropoda_melanoleuca
ENSMMOG00000007881	upf1	93	93.268	ENSACIG00000010985	-	100	92.676	Amphilophus_citrinellus
ENSMMOG00000007881	upf1	100	95.898	ENSACIG00000019949	upf1	100	95.533	Amphilophus_citrinellus
ENSMMOG00000007881	upf1	100	92.831	ENSAOCG00000006352	-	100	92.461	Amphiprion_ocellaris
ENSMMOG00000007881	upf1	100	96.047	ENSAOCG00000018519	upf1	100	96.047	Amphiprion_ocellaris
ENSMMOG00000007881	upf1	100	96.047	ENSAPEG00000016344	upf1	100	96.047	Amphiprion_percula
ENSMMOG00000007881	upf1	100	92.740	ENSAPEG00000006292	-	100	92.461	Amphiprion_percula
ENSMMOG00000007881	upf1	100	95.516	ENSATEG00000017867	upf1	100	95.516	Anabas_testudineus
ENSMMOG00000007881	upf1	100	92.740	ENSATEG00000016606	-	100	92.461	Anabas_testudineus
ENSMMOG00000007881	upf1	95	92.512	ENSAPLG00000009175	UPF1	100	92.030	Anas_platyrhynchos
ENSMMOG00000007881	upf1	94	91.230	ENSANAG00000024107	UPF1	95	90.649	Aotus_nancymaae
ENSMMOG00000007881	upf1	100	95.898	ENSACLG00000007181	upf1	100	95.533	Astatotilapia_calliptera
ENSMMOG00000007881	upf1	100	92.650	ENSACLG00000022630	-	100	92.371	Astatotilapia_calliptera
ENSMMOG00000007881	upf1	100	94.000	ENSAMXG00000042187	upf1	100	93.909	Astyanax_mexicanus
ENSMMOG00000007881	upf1	100	90.426	ENSBTAG00000020922	UPF1	100	89.973	Bos_taurus
ENSMMOG00000007881	upf1	82	54.153	WBGene00004880	smg-2	83	53.931	Caenorhabditis_elegans
ENSMMOG00000007881	upf1	100	90.097	ENSCJAG00000019627	UPF1	100	89.646	Callithrix_jacchus
ENSMMOG00000007881	upf1	100	90.186	ENSCAFG00000014578	UPF1	100	89.735	Canis_familiaris
ENSMMOG00000007881	upf1	100	91.071	ENSCAFG00020012347	UPF1	100	90.617	Canis_lupus_dingo
ENSMMOG00000007881	upf1	100	91.316	ENSCHIG00000011018	UPF1	100	90.860	Capra_hircus
ENSMMOG00000007881	upf1	94	92.660	ENSTSYG00000008877	UPF1	97	92.080	Carlito_syrichta
ENSMMOG00000007881	upf1	96	91.541	ENSCAPG00000005758	UPF1	95	91.985	Cavia_aperea
ENSMMOG00000007881	upf1	100	91.457	ENSCPOG00000025463	UPF1	100	90.999	Cavia_porcellus
ENSMMOG00000007881	upf1	100	90.982	ENSCCAG00000032175	UPF1	100	90.527	Cebus_capucinus
ENSMMOG00000007881	upf1	94	92.557	ENSCATG00000040306	UPF1	98	91.985	Cercocebus_atys
ENSMMOG00000007881	upf1	94	92.564	ENSCLAG00000004037	UPF1	99	92.080	Chinchilla_lanigera
ENSMMOG00000007881	upf1	100	90.982	ENSCSAG00000005276	UPF1	100	90.527	Chlorocebus_sabaeus
ENSMMOG00000007881	upf1	100	91.472	ENSCPBG00000012513	UPF1	100	90.925	Chrysemys_picta_bellii
ENSMMOG00000007881	upf1	78	79.695	ENSCING00000021399	-	99	79.343	Ciona_intestinalis
ENSMMOG00000007881	upf1	99	72.736	ENSCSAVG00000006533	-	99	72.464	Ciona_savignyi
ENSMMOG00000007881	upf1	94	92.564	ENSCANG00000029819	UPF1	97	91.985	Colobus_angolensis_palliatus
ENSMMOG00000007881	upf1	100	91.031	ENSCGRG00001021067	Upf1	100	90.664	Cricetulus_griseus_chok1gshd
ENSMMOG00000007881	upf1	94	92.183	ENSCGRG00000013480	Upf1	98	91.698	Cricetulus_griseus_crigri
ENSMMOG00000007881	upf1	100	90.302	ENSCSEG00000017239	upf1	100	90.393	Cynoglossus_semilaevis
ENSMMOG00000007881	upf1	100	93.176	ENSCSEG00000016159	-	100	92.532	Cynoglossus_semilaevis
ENSMMOG00000007881	upf1	100	92.287	ENSCVAG00000010561	upf1	100	91.916	Cyprinodon_variegatus
ENSMMOG00000007881	upf1	100	93.727	ENSDARG00000016302	upf1	100	93.818	Danio_rerio
ENSMMOG00000007881	upf1	94	90.095	ENSDORG00000009984	Upf1	95	89.609	Dipodomys_ordii
ENSMMOG00000007881	upf1	85	72.650	FBgn0030354	Upf1	81	71.236	Drosophila_melanogaster
ENSMMOG00000007881	upf1	55	86.258	ENSEBUG00000010069	upf1	96	86.589	Eptatretus_burgeri
ENSMMOG00000007881	upf1	100	91.316	ENSEASG00005006549	UPF1	100	90.860	Equus_asinus_asinus
ENSMMOG00000007881	upf1	100	91.316	ENSECAG00000010639	UPF1	100	90.860	Equus_caballus
ENSMMOG00000007881	upf1	100	93.032	ENSELUG00000020917	upf1	100	93.213	Esox_lucius
ENSMMOG00000007881	upf1	100	92.502	ENSELUG00000012916	-	100	92.683	Esox_lucius
ENSMMOG00000007881	upf1	100	90.186	ENSFCAG00000009757	UPF1	100	89.735	Felis_catus
ENSMMOG00000007881	upf1	95	93.130	ENSFALG00000009312	UPF1	96	92.455	Ficedula_albicollis
ENSMMOG00000007881	upf1	94	92.469	ENSFDAG00000014816	UPF1	99	91.985	Fukomys_damarensis
ENSMMOG00000007881	upf1	86	94.911	ENSFHEG00000016276	-	95	94.911	Fundulus_heteroclitus
ENSMMOG00000007881	upf1	100	91.121	ENSFHEG00000006428	upf1	100	90.909	Fundulus_heteroclitus
ENSMMOG00000007881	upf1	100	91.982	ENSGMOG00000007541	upf1	100	91.697	Gadus_morhua
ENSMMOG00000007881	upf1	100	91.145	ENSGALG00000003220	UPF1	100	90.600	Gallus_gallus
ENSMMOG00000007881	upf1	65	93.969	ENSGAFG00000015443	-	85	95.965	Gambusia_affinis
ENSMMOG00000007881	upf1	100	92.623	ENSGAFG00000004831	upf1	100	92.343	Gambusia_affinis
ENSMMOG00000007881	upf1	100	91.794	ENSGAGG00000022217	UPF1	100	91.516	Gopherus_agassizii
ENSMMOG00000007881	upf1	94	93.545	ENSGGOG00000002608	UPF1	98	92.960	Gorilla_gorilla
ENSMMOG00000007881	upf1	90	94.872	ENSHBUG00000014694	upf1	100	94.872	Haplochromis_burtoni
ENSMMOG00000007881	upf1	87	97.436	ENSHBUG00000008939	upf1	95	97.436	Haplochromis_burtoni
ENSMMOG00000007881	upf1	100	89.920	ENSHGLG00000010900	UPF1	100	89.646	Heterocephalus_glaber_female
ENSMMOG00000007881	upf1	94	90.658	ENSHGLG00100005904	UPF1	96	90.267	Heterocephalus_glaber_male
ENSMMOG00000007881	upf1	100	92.371	ENSHCOG00000008918	upf1	100	92.273	Hippocampus_comes
ENSMMOG00000007881	upf1	100	94.016	ENSIPUG00000005108	UPF1	100	94.091	Ictalurus_punctatus
ENSMMOG00000007881	upf1	100	90.893	ENSSTOG00000009196	UPF1	100	90.527	Ictidomys_tridecemlineatus
ENSMMOG00000007881	upf1	100	90.391	ENSJJAG00000023151	Upf1	100	90.027	Jaculus_jaculus
ENSMMOG00000007881	upf1	100	92.196	ENSKMAG00000004962	upf1	100	91.826	Kryptolebias_marmoratus
ENSMMOG00000007881	upf1	100	95.867	ENSLBEG00000014862	upf1	100	95.867	Labrus_bergylta
ENSMMOG00000007881	upf1	100	92.663	ENSLBEG00000027848	-	100	92.287	Labrus_bergylta
ENSMMOG00000007881	upf1	63	92.550	ENSLACG00000008482	UPF1	100	91.966	Latimeria_chalumnae
ENSMMOG00000007881	upf1	100	93.733	ENSLOCG00000002072	upf1	100	93.545	Lepisosteus_oculatus
ENSMMOG00000007881	upf1	100	90.080	ENSLAFG00000014963	UPF1	100	89.628	Loxodonta_africana
ENSMMOG00000007881	upf1	100	90.739	ENSMFAG00000037748	UPF1	100	90.285	Macaca_fascicularis
ENSMMOG00000007881	upf1	100	90.497	ENSMMUG00000023286	UPF1	100	90.044	Macaca_mulatta
ENSMMOG00000007881	upf1	100	90.739	ENSMNEG00000000046	UPF1	100	90.285	Macaca_nemestrina
ENSMMOG00000007881	upf1	94	92.564	ENSMLEG00000028404	UPF1	99	91.985	Mandrillus_leucophaeus
ENSMMOG00000007881	upf1	100	95.785	ENSMAMG00000006229	upf1	100	95.785	Mastacembelus_armatus
ENSMMOG00000007881	upf1	100	92.928	ENSMAMG00000006231	-	100	92.377	Mastacembelus_armatus
ENSMMOG00000007881	upf1	100	92.650	ENSMZEG00005016386	-	100	92.371	Maylandia_zebra
ENSMMOG00000007881	upf1	100	95.586	ENSMZEG00005003489	upf1	100	95.586	Maylandia_zebra
ENSMMOG00000007881	upf1	94	92.293	ENSMGAG00000004745	UPF1	99	91.810	Meleagris_gallopavo
ENSMMOG00000007881	upf1	94	92.183	ENSMAUG00000011398	Upf1	95	91.698	Mesocricetus_auratus
ENSMMOG00000007881	upf1	100	91.071	ENSMICG00000001659	UPF1	100	90.617	Microcebus_murinus
ENSMMOG00000007881	upf1	100	90.142	ENSMOCG00000005699	Upf1	100	89.867	Microtus_ochrogaster
ENSMMOG00000007881	upf1	100	90.035	ENSMODG00000003689	UPF1	100	89.762	Monodelphis_domestica
ENSMMOG00000007881	upf1	100	91.591	ENSMALG00000018100	-	100	91.222	Monopterus_albus
ENSMMOG00000007881	upf1	100	96.242	ENSMALG00000000144	upf1	100	96.242	Monopterus_albus
ENSMMOG00000007881	upf1	100	90.942	MGP_CAROLIEiJ_G0031142	Upf1	100	90.575	Mus_caroli
ENSMMOG00000007881	upf1	100	90.942	ENSMUSG00000058301	Upf1	100	90.575	Mus_musculus
ENSMMOG00000007881	upf1	100	90.942	MGP_PahariEiJ_G0021607	Upf1	100	90.575	Mus_pahari
ENSMMOG00000007881	upf1	100	90.942	MGP_SPRETEiJ_G0032260	Upf1	100	90.575	Mus_spretus
ENSMMOG00000007881	upf1	100	91.071	ENSMPUG00000015516	UPF1	100	90.617	Mustela_putorius_furo
ENSMMOG00000007881	upf1	99	90.950	ENSMLUG00000012122	UPF1	99	90.493	Myotis_lucifugus
ENSMMOG00000007881	upf1	100	89.903	ENSNGAG00000024107	Upf1	100	89.539	Nannospalax_galili
ENSMMOG00000007881	upf1	100	93.984	ENSNBRG00000000670	upf1	100	93.619	Neolamprologus_brichardi
ENSMMOG00000007881	upf1	100	89.239	ENSNBRG00000022069	-	100	91.934	Neolamprologus_brichardi
ENSMMOG00000007881	upf1	94	86.940	ENSNLEG00000006062	UPF1	99	86.355	Nomascus_leucogenys
ENSMMOG00000007881	upf1	83	87.671	ENSMEUG00000014146	-	83	86.667	Notamacropus_eugenii
ENSMMOG00000007881	upf1	94	86.898	ENSOPRG00000014018	UPF1	99	84.863	Ochotona_princeps
ENSMMOG00000007881	upf1	100	91.179	ENSODEG00000012426	UPF1	100	90.721	Octodon_degus
ENSMMOG00000007881	upf1	100	92.650	ENSONIG00000012729	-	100	92.371	Oreochromis_niloticus
ENSMMOG00000007881	upf1	100	95.586	ENSONIG00000010452	upf1	100	95.586	Oreochromis_niloticus
ENSMMOG00000007881	upf1	100	90.160	ENSOANG00000004568	UPF1	100	89.530	Ornithorhynchus_anatinus
ENSMMOG00000007881	upf1	100	92.105	ENSORLG00000008453	upf1	100	91.553	Oryzias_latipes
ENSMMOG00000007881	upf1	100	91.938	ENSORLG00020014758	upf1	100	91.387	Oryzias_latipes_hni
ENSMMOG00000007881	upf1	100	91.938	ENSORLG00015010165	upf1	100	91.387	Oryzias_latipes_hsok
ENSMMOG00000007881	upf1	100	92.468	ENSOMEG00000003665	upf1	100	91.916	Oryzias_melastigma
ENSMMOG00000007881	upf1	100	91.071	ENSOGAG00000012866	UPF1	100	90.617	Otolemur_garnettii
ENSMMOG00000007881	upf1	96	89.236	ENSOARG00000010739	UPF1	100	88.582	Ovis_aries
ENSMMOG00000007881	upf1	94	92.564	ENSPPAG00000043884	UPF1	96	91.985	Pan_paniscus
ENSMMOG00000007881	upf1	100	90.186	ENSPPRG00000023470	UPF1	100	89.735	Panthera_pardus
ENSMMOG00000007881	upf1	94	91.522	ENSPTIG00000010159	UPF1	99	90.935	Panthera_tigris_altaica
ENSMMOG00000007881	upf1	100	90.739	ENSPTRG00000010721	UPF1	100	90.285	Pan_troglodytes
ENSMMOG00000007881	upf1	100	90.739	ENSPANG00000008847	UPF1	100	90.285	Papio_anubis
ENSMMOG00000007881	upf1	92	94.632	ENSPKIG00000006069	upf1	95	95.947	Paramormyrops_kingsleyae
ENSMMOG00000007881	upf1	70	92.167	ENSPSIG00000009491	UPF1	100	91.373	Pelodiscus_sinensis
ENSMMOG00000007881	upf1	100	92.831	ENSPMGG00000017327	upf1	100	92.831	Periophthalmus_magnuspinnatus
ENSMMOG00000007881	upf1	100	90.142	ENSPEMG00000001085	Upf1	100	89.778	Peromyscus_maniculatus_bairdii
ENSMMOG00000007881	upf1	100	87.173	ENSPMAG00000001206	upf1	100	86.799	Petromyzon_marinus
ENSMMOG00000007881	upf1	100	91.421	ENSPCIG00000006156	UPF1	100	91.055	Phascolarctos_cinereus
ENSMMOG00000007881	upf1	100	93.321	ENSPLAG00000018155	-	100	93.231	Poecilia_latipinna
ENSMMOG00000007881	upf1	100	92.623	ENSPLAG00000016232	-	100	92.343	Poecilia_latipinna
ENSMMOG00000007881	upf1	100	92.539	ENSPMEG00000016319	-	100	92.259	Poecilia_mexicana
ENSMMOG00000007881	upf1	100	93.973	ENSPMEG00000011443	-	100	93.790	Poecilia_mexicana
ENSMMOG00000007881	upf1	100	92.441	ENSPREG00000011247	-	100	92.160	Poecilia_reticulata
ENSMMOG00000007881	upf1	100	93.423	ENSPREG00000009940	upf1	100	93.333	Poecilia_reticulata
ENSMMOG00000007881	upf1	100	85.310	ENSPPYG00000009752	UPF1	100	85.195	Pongo_abelii
ENSMMOG00000007881	upf1	70	98.316	ENSPCAG00000012962	UPF1	68	98.316	Procavia_capensis
ENSMMOG00000007881	upf1	100	90.667	ENSPCOG00000023813	UPF1	100	90.214	Propithecus_coquereli
ENSMMOG00000007881	upf1	68	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSMMOG00000007881	upf1	100	95.586	ENSPNYG00000003694	upf1	100	95.586	Pundamilia_nyererei
ENSMMOG00000007881	upf1	100	92.740	ENSPNYG00000016731	-	100	92.371	Pundamilia_nyererei
ENSMMOG00000007881	upf1	100	93.909	ENSPNAG00000025614	upf1	100	93.818	Pygocentrus_nattereri
ENSMMOG00000007881	upf1	100	90.942	ENSRNOG00000020134	Upf1	100	90.575	Rattus_norvegicus
ENSMMOG00000007881	upf1	94	90.181	ENSRBIG00000013894	UPF1	98	92.662	Rhinopithecus_bieti
ENSMMOG00000007881	upf1	94	92.564	ENSRROG00000040935	UPF1	98	92.662	Rhinopithecus_roxellana
ENSMMOG00000007881	upf1	79	54.954	YMR080C	NAM7	84	56.793	Saccharomyces_cerevisiae
ENSMMOG00000007881	upf1	94	92.564	ENSSBOG00000023632	UPF1	96	91.985	Saimiri_boliviensis_boliviensis
ENSMMOG00000007881	upf1	94	92.681	ENSSHAG00000010499	UPF1	99	92.198	Sarcophilus_harrisii
ENSMMOG00000007881	upf1	100	93.466	ENSSFOG00015021095	upf1	100	93.370	Scleropages_formosus
ENSMMOG00000007881	upf1	100	92.426	ENSSMAG00000021018	-	100	92.468	Scophthalmus_maximus
ENSMMOG00000007881	upf1	100	94.879	ENSSMAG00000005055	upf1	100	94.879	Scophthalmus_maximus
ENSMMOG00000007881	upf1	100	95.964	ENSSDUG00000013320	upf1	100	95.964	Seriola_dumerili
ENSMMOG00000007881	upf1	100	92.838	ENSSDUG00000009629	-	100	92.377	Seriola_dumerili
ENSMMOG00000007881	upf1	100	92.838	ENSSLDG00000006878	-	100	92.377	Seriola_lalandi_dorsalis
ENSMMOG00000007881	upf1	100	96.109	ENSSLDG00000020868	upf1	100	96.109	Seriola_lalandi_dorsalis
ENSMMOG00000007881	upf1	100	91.449	ENSSPUG00000010538	UPF1	100	91.081	Sphenodon_punctatus
ENSMMOG00000007881	upf1	100	93.710	ENSSPAG00000000003	upf1	100	93.522	Stegastes_partitus
ENSMMOG00000007881	upf1	100	92.825	ENSSPAG00000011521	-	100	92.455	Stegastes_partitus
ENSMMOG00000007881	upf1	100	91.316	ENSSSCG00000039301	UPF1	99	93.057	Sus_scrofa
ENSMMOG00000007881	upf1	83	86.489	ENSTGUG00000001057	UPF1	100	89.941	Taeniopygia_guttata
ENSMMOG00000007881	upf1	100	96.059	ENSTRUG00000000150	upf1	100	96.059	Takifugu_rubripes
ENSMMOG00000007881	upf1	100	92.455	ENSTRUG00000005131	-	100	91.902	Takifugu_rubripes
ENSMMOG00000007881	upf1	100	87.645	ENSTTRG00000011544	UPF1	100	87.097	Tursiops_truncatus
ENSMMOG00000007881	upf1	100	91.071	ENSUAMG00000007093	UPF1	100	90.617	Ursus_americanus
ENSMMOG00000007881	upf1	94	93.642	ENSUMAG00000006652	UPF1	99	93.257	Ursus_maritimus
ENSMMOG00000007881	upf1	100	91.071	ENSVVUG00000007797	UPF1	100	90.617	Vulpes_vulpes
ENSMMOG00000007881	upf1	100	78.345	ENSXETG00000013602	upf1	100	77.797	Xenopus_tropicalis
ENSMMOG00000007881	upf1	94	93.385	ENSXCOG00000005764	-	99	93.087	Xiphophorus_couchianus
ENSMMOG00000007881	upf1	97	93.928	ENSXCOG00000015275	-	96	93.928	Xiphophorus_couchianus
ENSMMOG00000007881	upf1	100	92.630	ENSXMAG00000002540	-	100	92.350	Xiphophorus_maculatus
ENSMMOG00000007881	upf1	100	93.951	ENSXMAG00000001703	-	100	93.951	Xiphophorus_maculatus