EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMMOG00000010883 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Mola_mola
Status: putative
Strand: Plus strand
Length: 14447 bases
Position: chrKV751332.1:8713599-8728045
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMOP00000014221	EST1	PF10374.9	2.3e-12	1	1
ENSMMOP00000014221	EST1_DNA_bind	PF10373.9	1.8e-54	1	1
ENSMMOP00000014221	PIN_4	PF13638.6	8.5e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMOT00000014451	-	4536	-	ENSMMOP00000014221	1511 (aa)	-	-

Gene Model

Click here to download ENSMMOG00000010883's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMMOG00000010883's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMOG00000010883	smg6	100	49.018	ENSG00000070366	SMG6	100	60.646	Homo_sapiens
ENSMMOG00000010883	smg6	100	72.865	ENSAPOG00000019448	smg6	100	72.683	Acanthochromis_polyacanthus
ENSMMOG00000010883	smg6	100	48.284	ENSAMEG00000007632	SMG6	100	47.702	Ailuropoda_melanoleuca
ENSMMOG00000010883	smg6	93	71.771	ENSACIG00000012997	smg6	100	71.971	Amphilophus_citrinellus
ENSMMOG00000010883	smg6	100	72.502	ENSAOCG00000002630	smg6	100	72.595	Amphiprion_ocellaris
ENSMMOG00000010883	smg6	100	72.078	ENSAPEG00000019101	smg6	100	72.138	Amphiprion_percula
ENSMMOG00000010883	smg6	100	69.874	ENSATEG00000006483	smg6	100	69.695	Anabas_testudineus
ENSMMOG00000010883	smg6	66	50.095	ENSACAG00000011783	SMG6	87	48.743	Anolis_carolinensis
ENSMMOG00000010883	smg6	100	48.065	ENSANAG00000035760	SMG6	100	47.604	Aotus_nancymaae
ENSMMOG00000010883	smg6	100	68.535	ENSACLG00000005288	smg6	100	70.741	Astatotilapia_calliptera
ENSMMOG00000010883	smg6	100	48.595	ENSBTAG00000000267	SMG6	100	48.485	Bos_taurus
ENSMMOG00000010883	smg6	100	48.564	ENSCJAG00000001820	SMG6	100	47.815	Callithrix_jacchus
ENSMMOG00000010883	smg6	100	48.093	ENSCAFG00000019260	SMG6	100	48.101	Canis_familiaris
ENSMMOG00000010883	smg6	100	48.093	ENSCAFG00020009770	SMG6	100	48.101	Canis_lupus_dingo
ENSMMOG00000010883	smg6	100	48.523	ENSCHIG00000021998	SMG6	100	48.167	Capra_hircus
ENSMMOG00000010883	smg6	100	48.220	ENSTSYG00000003406	SMG6	100	60.456	Carlito_syrichta
ENSMMOG00000010883	smg6	83	57.664	ENSCAPG00000016197	SMG6	90	56.934	Cavia_aperea
ENSMMOG00000010883	smg6	100	48.059	ENSCPOG00000014878	SMG6	100	47.189	Cavia_porcellus
ENSMMOG00000010883	smg6	100	47.973	ENSCCAG00000035801	SMG6	100	47.172	Cebus_capucinus
ENSMMOG00000010883	smg6	100	48.310	ENSCATG00000031956	SMG6	100	48.104	Cercocebus_atys
ENSMMOG00000010883	smg6	100	48.443	ENSCLAG00000006748	SMG6	100	47.858	Chinchilla_lanigera
ENSMMOG00000010883	smg6	100	48.436	ENSCSAG00000013800	SMG6	100	48.230	Chlorocebus_sabaeus
ENSMMOG00000010883	smg6	79	54.553	ENSCPBG00000020369	SMG6	84	54.236	Chrysemys_picta_bellii
ENSMMOG00000010883	smg6	90	51.695	ENSCANG00000031764	SMG6	100	60.837	Colobus_angolensis_palliatus
ENSMMOG00000010883	smg6	59	38.639	ENSCGRG00001019595	Smg6	99	38.010	Cricetulus_griseus_chok1gshd
ENSMMOG00000010883	smg6	77	51.334	ENSCGRG00000007782	Smg6	92	46.788	Cricetulus_griseus_crigri
ENSMMOG00000010883	smg6	100	64.089	ENSCSEG00000012757	smg6	99	66.257	Cynoglossus_semilaevis
ENSMMOG00000010883	smg6	100	63.680	ENSCVAG00000012789	smg6	100	62.959	Cyprinodon_variegatus
ENSMMOG00000010883	smg6	100	57.974	ENSDARG00000100481	smg6	100	57.420	Danio_rerio
ENSMMOG00000010883	smg6	100	48.221	ENSDNOG00000048283	SMG6	100	47.802	Dasypus_novemcinctus
ENSMMOG00000010883	smg6	95	62.037	ENSDORG00000016614	Smg6	99	60.916	Dipodomys_ordii
ENSMMOG00000010883	smg6	88	90.000	ENSETEG00000016790	SMG6	87	90.000	Echinops_telfairi
ENSMMOG00000010883	smg6	62	46.766	ENSEBUG00000005059	smg6	63	46.407	Eptatretus_burgeri
ENSMMOG00000010883	smg6	99	49.207	ENSEASG00005009318	SMG6	99	48.267	Equus_asinus_asinus
ENSMMOG00000010883	smg6	99	49.144	ENSECAG00000006519	SMG6	99	48.204	Equus_caballus
ENSMMOG00000010883	smg6	76	55.401	ENSEEUG00000003493	SMG6	83	54.381	Erinaceus_europaeus
ENSMMOG00000010883	smg6	96	65.446	ENSELUG00000005934	smg6	86	66.540	Esox_lucius
ENSMMOG00000010883	smg6	100	48.498	ENSFCAG00000028817	SMG6	100	48.252	Felis_catus
ENSMMOG00000010883	smg6	90	50.375	ENSFALG00000006538	SMG6	89	54.231	Ficedula_albicollis
ENSMMOG00000010883	smg6	100	47.938	ENSFDAG00000015106	SMG6	100	47.231	Fukomys_damarensis
ENSMMOG00000010883	smg6	100	63.884	ENSFHEG00000013282	smg6	100	63.368	Fundulus_heteroclitus
ENSMMOG00000010883	smg6	100	47.352	ENSGALG00000003108	SMG6	98	47.062	Gallus_gallus
ENSMMOG00000010883	smg6	100	63.385	ENSGAFG00000000379	smg6	100	63.401	Gambusia_affinis
ENSMMOG00000010883	smg6	90	70.459	ENSGACG00000020521	smg6	100	70.580	Gasterosteus_aculeatus
ENSMMOG00000010883	smg6	68	58.672	ENSGAGG00000025617	SMG6	73	58.395	Gopherus_agassizii
ENSMMOG00000010883	smg6	100	48.345	ENSGGOG00000017156	SMG6	100	47.352	Gorilla_gorilla
ENSMMOG00000010883	smg6	100	68.475	ENSHBUG00000021311	smg6	100	68.874	Haplochromis_burtoni
ENSMMOG00000010883	smg6	100	47.910	ENSHGLG00000012882	SMG6	100	46.824	Heterocephalus_glaber_female
ENSMMOG00000010883	smg6	80	54.651	ENSHGLG00100017815	SMG6	82	60.891	Heterocephalus_glaber_male
ENSMMOG00000010883	smg6	68	70.416	ENSHCOG00000008761	smg6	83	70.132	Hippocampus_comes
ENSMMOG00000010883	smg6	100	53.598	ENSIPUG00000012493	smg6	100	53.203	Ictalurus_punctatus
ENSMMOG00000010883	smg6	100	49.368	ENSSTOG00000028127	SMG6	100	48.146	Ictidomys_tridecemlineatus
ENSMMOG00000010883	smg6	81	43.988	ENSJJAG00000015367	Smg6	95	42.673	Jaculus_jaculus
ENSMMOG00000010883	smg6	100	66.527	ENSKMAG00000000279	smg6	100	66.407	Kryptolebias_marmoratus
ENSMMOG00000010883	smg6	100	70.275	ENSLBEG00000002184	smg6	100	70.215	Labrus_bergylta
ENSMMOG00000010883	smg6	70	64.551	ENSLOCG00000006448	smg6	99	56.747	Lepisosteus_oculatus
ENSMMOG00000010883	smg6	100	47.995	ENSLAFG00000001261	SMG6	100	47.085	Loxodonta_africana
ENSMMOG00000010883	smg6	100	47.913	ENSMFAG00000003394	SMG6	100	47.703	Macaca_fascicularis
ENSMMOG00000010883	smg6	100	48.310	ENSMMUG00000023161	SMG6	100	48.104	Macaca_mulatta
ENSMMOG00000010883	smg6	100	46.823	ENSMNEG00000044592	SMG6	100	46.528	Macaca_nemestrina
ENSMMOG00000010883	smg6	86	63.148	ENSMLEG00000029353	SMG6	92	61.792	Mandrillus_leucophaeus
ENSMMOG00000010883	smg6	100	71.266	ENSMAMG00000020119	smg6	100	72.046	Mastacembelus_armatus
ENSMMOG00000010883	smg6	100	68.577	ENSMZEG00005024736	smg6	100	69.481	Maylandia_zebra
ENSMMOG00000010883	smg6	63	48.211	ENSMGAG00000005401	-	89	47.964	Meleagris_gallopavo
ENSMMOG00000010883	smg6	100	48.375	ENSMICG00000012913	SMG6	100	47.791	Microcebus_murinus
ENSMMOG00000010883	smg6	81	54.670	ENSMODG00000010622	SMG6	87	53.916	Monodelphis_domestica
ENSMMOG00000010883	smg6	100	71.377	ENSMALG00000001106	smg6	100	70.958	Monopterus_albus
ENSMMOG00000010883	smg6	77	56.003	MGP_CAROLIEiJ_G0016729	Smg6	97	63.739	Mus_caroli
ENSMMOG00000010883	smg6	100	48.125	ENSMUSG00000038290	Smg6	96	63.739	Mus_musculus
ENSMMOG00000010883	smg6	100	47.719	MGP_PahariEiJ_G0017866	Smg6	92	65.465	Mus_pahari
ENSMMOG00000010883	smg6	77	55.958	MGP_SPRETEiJ_G0017572	Smg6	97	63.456	Mus_spretus
ENSMMOG00000010883	smg6	100	48.405	ENSMPUG00000013046	SMG6	100	48.172	Mustela_putorius_furo
ENSMMOG00000010883	smg6	100	48.312	ENSMLUG00000005739	SMG6	100	47.791	Myotis_lucifugus
ENSMMOG00000010883	smg6	90	51.133	ENSNGAG00000007287	Smg6	83	61.386	Nannospalax_galili
ENSMMOG00000010883	smg6	98	69.416	ENSNBRG00000009511	smg6	99	70.794	Neolamprologus_brichardi
ENSMMOG00000010883	smg6	90	50.974	ENSNLEG00000017171	SMG6	100	60.646	Nomascus_leucogenys
ENSMMOG00000010883	smg6	80	53.745	ENSMEUG00000015804	SMG6	88	52.819	Notamacropus_eugenii
ENSMMOG00000010883	smg6	54	67.598	ENSOPRG00000000579	SMG6	83	67.598	Ochotona_princeps
ENSMMOG00000010883	smg6	95	61.479	ENSODEG00000008038	SMG6	98	60.366	Octodon_degus
ENSMMOG00000010883	smg6	100	68.614	ENSONIG00000005594	smg6	100	69.458	Oreochromis_niloticus
ENSMMOG00000010883	smg6	100	48.502	ENSOCUG00000013018	SMG6	100	47.607	Oryctolagus_cuniculus
ENSMMOG00000010883	smg6	100	61.970	ENSORLG00000003317	smg6	100	63.234	Oryzias_latipes
ENSMMOG00000010883	smg6	100	62.493	ENSORLG00020015343	smg6	100	63.505	Oryzias_latipes_hni
ENSMMOG00000010883	smg6	100	62.261	ENSORLG00015020454	smg6	100	63.527	Oryzias_latipes_hsok
ENSMMOG00000010883	smg6	100	63.222	ENSOMEG00000010838	smg6	100	63.526	Oryzias_melastigma
ENSMMOG00000010883	smg6	100	47.957	ENSOGAG00000004483	SMG6	100	47.434	Otolemur_garnettii
ENSMMOG00000010883	smg6	99	48.032	ENSOARG00000015076	SMG6	89	53.469	Ovis_aries
ENSMMOG00000010883	smg6	100	48.282	ENSPPAG00000043296	SMG6	100	47.826	Pan_paniscus
ENSMMOG00000010883	smg6	100	48.498	ENSPPRG00000014581	SMG6	100	48.252	Panthera_pardus
ENSMMOG00000010883	smg6	77	56.455	ENSPTIG00000008925	SMG6	100	60.837	Panthera_tigris_altaica
ENSMMOG00000010883	smg6	100	49.048	ENSPTRG00000008544	SMG6	100	60.646	Pan_troglodytes
ENSMMOG00000010883	smg6	100	49.078	ENSPANG00000024588	SMG6	100	48.104	Papio_anubis
ENSMMOG00000010883	smg6	70	52.327	ENSPSIG00000006660	SMG6	81	51.888	Pelodiscus_sinensis
ENSMMOG00000010883	smg6	94	79.552	ENSPMGG00000000844	smg6	99	78.852	Periophthalmus_magnuspinnatus
ENSMMOG00000010883	smg6	77	56.406	ENSPEMG00000020707	Smg6	100	47.509	Peromyscus_maniculatus_bairdii
ENSMMOG00000010883	smg6	100	64.221	ENSPFOG00000012035	smg6	100	63.877	Poecilia_formosa
ENSMMOG00000010883	smg6	100	64.281	ENSPLAG00000017660	smg6	100	63.937	Poecilia_latipinna
ENSMMOG00000010883	smg6	100	64.342	ENSPMEG00000000258	smg6	100	64.058	Poecilia_mexicana
ENSMMOG00000010883	smg6	100	64.166	ENSPREG00000010066	smg6	100	63.882	Poecilia_reticulata
ENSMMOG00000010883	smg6	100	45.415	ENSPPYG00000007790	SMG6	100	44.836	Pongo_abelii
ENSMMOG00000010883	smg6	100	46.768	ENSPCAG00000000552	SMG6	100	45.931	Procavia_capensis
ENSMMOG00000010883	smg6	100	48.250	ENSPCOG00000020925	SMG6	100	47.699	Propithecus_coquereli
ENSMMOG00000010883	smg6	77	52.615	ENSPVAG00000002159	SMG6	78	53.209	Pteropus_vampyrus
ENSMMOG00000010883	smg6	93	69.470	ENSPNYG00000024151	smg6	99	70.929	Pundamilia_nyererei
ENSMMOG00000010883	smg6	98	60.803	ENSPNAG00000015480	smg6	100	53.271	Pygocentrus_nattereri
ENSMMOG00000010883	smg6	100	47.842	ENSRNOG00000003041	Smg6	96	64.306	Rattus_norvegicus
ENSMMOG00000010883	smg6	100	48.095	ENSRBIG00000024746	SMG6	100	47.826	Rhinopithecus_bieti
ENSMMOG00000010883	smg6	100	48.095	ENSRROG00000030423	SMG6	100	60.837	Rhinopithecus_roxellana
ENSMMOG00000010883	smg6	100	47.661	ENSSBOG00000022518	SMG6	100	45.833	Saimiri_boliviensis_boliviensis
ENSMMOG00000010883	smg6	79	55.765	ENSSHAG00000010045	SMG6	85	54.824	Sarcophilus_harrisii
ENSMMOG00000010883	smg6	83	59.179	ENSSFOG00015005436	smg6	80	60.514	Scleropages_formosus
ENSMMOG00000010883	smg6	100	69.539	ENSSMAG00000019777	smg6	100	69.797	Scophthalmus_maximus
ENSMMOG00000010883	smg6	100	73.923	ENSSDUG00000016412	smg6	100	73.684	Seriola_dumerili
ENSMMOG00000010883	smg6	91	74.391	ENSSLDG00000020747	smg6	98	74.128	Seriola_lalandi_dorsalis
ENSMMOG00000010883	smg6	99	46.779	ENSSPUG00000007152	SMG6	87	52.297	Sphenodon_punctatus
ENSMMOG00000010883	smg6	100	72.380	ENSSPAG00000015633	smg6	100	72.744	Stegastes_partitus
ENSMMOG00000010883	smg6	100	49.396	ENSSSCG00000017826	SMG6	100	48.293	Sus_scrofa
ENSMMOG00000010883	smg6	100	47.022	ENSTGUG00000005836	SMG6	100	46.683	Taeniopygia_guttata
ENSMMOG00000010883	smg6	93	73.156	ENSTRUG00000000358	smg6	98	72.614	Takifugu_rubripes
ENSMMOG00000010883	smg6	97	63.542	ENSTBEG00000011424	SMG6	100	45.641	Tupaia_belangeri
ENSMMOG00000010883	smg6	91	57.949	ENSTTRG00000001175	SMG6	91	56.912	Tursiops_truncatus
ENSMMOG00000010883	smg6	100	47.955	ENSUAMG00000025152	SMG6	100	47.494	Ursus_americanus
ENSMMOG00000010883	smg6	90	51.367	ENSUMAG00000009306	SMG6	85	55.117	Ursus_maritimus
ENSMMOG00000010883	smg6	85	88.889	ENSVPAG00000000225	SMG6	88	88.889	Vicugna_pacos
ENSMMOG00000010883	smg6	100	48.218	ENSVVUG00000021727	SMG6	100	48.165	Vulpes_vulpes
ENSMMOG00000010883	smg6	69	54.977	ENSXETG00000023799	SMG6	87	50.892	Xenopus_tropicalis
ENSMMOG00000010883	smg6	98	65.397	ENSXCOG00000009867	smg6	99	65.016	Xiphophorus_couchianus
ENSMMOG00000010883	smg6	100	64.243	ENSXMAG00000010321	smg6	100	63.839	Xiphophorus_maculatus