EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMMOG00000013458 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Mola_mola
Status: putative
Strand: Minus strand
Length: 11329 bases
Position: chrKV751318.1:2483595-2494923
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMOP00000017722	zf-C2H2	PF00096.26	4.1e-18	1	3
ENSMMOP00000017722	zf-C2H2	PF00096.26	4.1e-18	2	3
ENSMMOP00000017722	zf-C2H2	PF00096.26	4.1e-18	3	3
ENSMMOP00000017722	zf-met	PF12874.7	1.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMOT00000018014	-	1351	-	ENSMMOP00000017723	450 (aa)	-	-
ENSMMOT00000018013	-	1812	-	ENSMMOP00000017722	603 (aa)	-	-

Gene Model

Click here to download ENSMMOG00000013458's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMMOG00000013458's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMMOG00000013458	prdm1b	60	34.247	ENSMMOG00000005844	PRDM15	65	34.247

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMOG00000013458	prdm1b	73	71.041	ENSAPOG00000022084	prdm1b	93	73.756	Acanthochromis_polyacanthus
ENSMMOG00000013458	prdm1b	96	36.874	ENSAPOG00000014135	-	80	36.874	Acanthochromis_polyacanthus
ENSMMOG00000013458	prdm1b	94	36.037	ENSACIG00000009747	-	79	36.547	Amphilophus_citrinellus
ENSMMOG00000013458	prdm1b	98	78.057	ENSACIG00000014426	prdm1b	96	78.057	Amphilophus_citrinellus
ENSMMOG00000013458	prdm1b	97	73.729	ENSAOCG00000002230	prdm1b	99	74.576	Amphiprion_ocellaris
ENSMMOG00000013458	prdm1b	93	74.336	ENSAPEG00000019826	prdm1b	95	73.277	Amphiprion_percula
ENSMMOG00000013458	prdm1b	51	55.435	ENSATEG00000021017	prdm1a	56	55.435	Anabas_testudineus
ENSMMOG00000013458	prdm1b	96	83.649	ENSATEG00000006924	prdm1b	94	83.993	Anabas_testudineus
ENSMMOG00000013458	prdm1b	95	83.160	ENSACLG00000005487	prdm1b	90	83.160	Astatotilapia_calliptera
ENSMMOG00000013458	prdm1b	70	59.211	ENSCSEG00000009707	prdm1a	63	59.211	Cynoglossus_semilaevis
ENSMMOG00000013458	prdm1b	97	74.237	ENSCVAG00000016746	prdm1b	94	74.703	Cyprinodon_variegatus
ENSMMOG00000013458	prdm1b	56	61.842	ENSCVAG00000019081	prdm1a	60	61.842	Cyprinodon_variegatus
ENSMMOG00000013458	prdm1b	97	77.342	ENSFHEG00000019848	prdm1b	95	77.342	Fundulus_heteroclitus
ENSMMOG00000013458	prdm1b	96	77.872	ENSGAFG00000016191	prdm1b	94	78.209	Gambusia_affinis
ENSMMOG00000013458	prdm1b	94	73.650	ENSGACG00000002716	prdm1b	86	73.813	Gasterosteus_aculeatus
ENSMMOG00000013458	prdm1b	95	83.681	ENSHBUG00000001475	prdm1b	95	83.681	Haplochromis_burtoni
ENSMMOG00000013458	prdm1b	97	73.818	ENSHCOG00000003617	prdm1b	95	73.818	Hippocampus_comes
ENSMMOG00000013458	prdm1b	91	54.252	ENSIPUG00000013740	prdm1b	91	54.422	Ictalurus_punctatus
ENSMMOG00000013458	prdm1b	90	38.088	ENSKMAG00000016247	-	75	38.088	Kryptolebias_marmoratus
ENSMMOG00000013458	prdm1b	94	72.935	ENSKMAG00000011218	prdm1b	91	72.935	Kryptolebias_marmoratus
ENSMMOG00000013458	prdm1b	96	84.786	ENSLBEG00000020955	prdm1b	93	84.786	Labrus_bergylta
ENSMMOG00000013458	prdm1b	95	54.416	ENSLOCG00000004978	prdm1b	80	53.943	Lepisosteus_oculatus
ENSMMOG00000013458	prdm1b	96	81.475	ENSMZEG00005026361	prdm1b	89	81.475	Maylandia_zebra
ENSMMOG00000013458	prdm1b	96	79.725	ENSMALG00000011410	prdm1b	96	79.862	Monopterus_albus
ENSMMOG00000013458	prdm1b	92	87.952	ENSONIG00000013583	prdm1b	86	64.640	Oreochromis_niloticus
ENSMMOG00000013458	prdm1b	95	70.034	ENSORLG00000010025	prdm1b	95	70.202	Oryzias_latipes
ENSMMOG00000013458	prdm1b	93	69.831	ENSORLG00015009022	prdm1b	92	70.169	Oryzias_latipes_hsok
ENSMMOG00000013458	prdm1b	94	47.535	ENSPKIG00000022335	prdm1b	76	48.090	Paramormyrops_kingsleyae
ENSMMOG00000013458	prdm1b	88	70.054	ENSPFOG00000003103	prdm1b	85	70.054	Poecilia_formosa
ENSMMOG00000013458	prdm1b	96	79.392	ENSPLAG00000018491	prdm1b	93	79.392	Poecilia_latipinna
ENSMMOG00000013458	prdm1b	96	81.520	ENSPMEG00000007869	prdm1b	93	81.520	Poecilia_mexicana
ENSMMOG00000013458	prdm1b	96	78.824	ENSPREG00000011327	prdm1b	93	78.824	Poecilia_reticulata
ENSMMOG00000013458	prdm1b	93	40.276	ENSPVAG00000011732	PRDM1	80	40.429	Pteropus_vampyrus
ENSMMOG00000013458	prdm1b	92	42.691	ENSPNAG00000028442	prdm1a	75	42.691	Pygocentrus_nattereri
ENSMMOG00000013458	prdm1b	92	60.644	ENSSFOG00015021896	prdm1b	77	60.644	Scleropages_formosus
ENSMMOG00000013458	prdm1b	96	82.192	ENSSMAG00000020467	prdm1b	93	82.562	Scophthalmus_maximus
ENSMMOG00000013458	prdm1b	96	85.445	ENSSDUG00000020610	prdm1b	93	85.445	Seriola_dumerili
ENSMMOG00000013458	prdm1b	90	36.013	ENSSDUG00000000524	-	75	36.013	Seriola_dumerili
ENSMMOG00000013458	prdm1b	95	85.640	ENSSLDG00000021973	prdm1b	94	85.640	Seriola_lalandi_dorsalis
ENSMMOG00000013458	prdm1b	94	38.389	ENSSPAG00000009830	-	79	38.389	Stegastes_partitus
ENSMMOG00000013458	prdm1b	96	80.034	ENSSPAG00000000803	prdm1b	94	80.207	Stegastes_partitus
ENSMMOG00000013458	prdm1b	95	79.514	ENSXCOG00000018920	prdm1b	82	79.514	Xiphophorus_couchianus
ENSMMOG00000013458	prdm1b	98	76.014	ENSXMAG00000016765	prdm1b	97	76.014	Xiphophorus_maculatus