EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMMUG00000000090 (Gene tree)
Gene ID: 719446
Gene Symbol: SMG5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Macaca_mulatta
Status: putative
Strand: Minus strand
Length: 35167 bases
Position: chr1:130862526-130897692
Accession: 719446
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMUP00000038750	EST1	PF10374.9	8.4e-24	1	1
ENSMMUP00000000123	EST1	PF10374.9	1e-23	1	1
ENSMMUP00000038750	EST1_DNA_bind	PF10373.9	2.6e-40	1	2
ENSMMUP00000038750	EST1_DNA_bind	PF10373.9	2.6e-40	2	2
ENSMMUP00000000123	EST1_DNA_bind	PF10373.9	4.6e-40	1	2
ENSMMUP00000000123	EST1_DNA_bind	PF10373.9	4.6e-40	2	2
ENSMMUP00000038750	PIN_4	PF13638.6	3e-05	1	1
ENSMMUP00000000123	PIN_4	PF13638.6	3.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMUT00000000134	-	3155	-	ENSMMUP00000000123	1016 (aa)	-	F7HAH9
ENSMMUT00000045706	-	3015	XM_015110242	ENSMMUP00000038750	1004 (aa)	XP_014965728	F6W9F4

Gene Model

Click here to download ENSMMUG00000000090's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMMUG00000000090's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMUG00000000090	SMG5	100	99.114	ENSG00000198952	SMG5	100	99.114	Homo_sapiens
ENSMMUG00000000090	SMG5	99	68.353	ENSAPOG00000019690	smg5	93	77.336	Acanthochromis_polyacanthus
ENSMMUG00000000090	SMG5	98	92.548	ENSAMEG00000014458	SMG5	100	92.548	Ailuropoda_melanoleuca
ENSMMUG00000000090	SMG5	99	65.795	ENSACIG00000001353	smg5	99	67.444	Amphilophus_citrinellus
ENSMMUG00000000090	SMG5	98	65.898	ENSAOCG00000019483	smg5	93	78.302	Amphiprion_ocellaris
ENSMMUG00000000090	SMG5	98	67.205	ENSAPEG00000022949	smg5	93	78.066	Amphiprion_percula
ENSMMUG00000000090	SMG5	99	65.868	ENSATEG00000005348	smg5	93	78.723	Anabas_testudineus
ENSMMUG00000000090	SMG5	98	78.927	ENSAPLG00000010263	SMG5	100	78.634	Anas_platyrhynchos
ENSMMUG00000000090	SMG5	100	98.130	ENSANAG00000032899	SMG5	100	98.130	Aotus_nancymaae
ENSMMUG00000000090	SMG5	99	65.247	ENSACLG00000009311	smg5	92	78.588	Astatotilapia_calliptera
ENSMMUG00000000090	SMG5	100	96.063	ENSBTAG00000009435	SMG5	100	96.063	Bos_taurus
ENSMMUG00000000090	SMG5	99	44.023	ENSBTAG00000021747	-	99	43.988	Bos_taurus
ENSMMUG00000000090	SMG5	100	98.130	ENSCJAG00000005684	SMG5	100	98.130	Callithrix_jacchus
ENSMMUG00000000090	SMG5	100	94.587	ENSCAFG00000016839	SMG5	100	93.799	Canis_familiaris
ENSMMUG00000000090	SMG5	100	94.587	ENSCAFG00020006061	SMG5	100	93.799	Canis_lupus_dingo
ENSMMUG00000000090	SMG5	99	44.930	ENSCHIG00000006323	-	99	44.422	Capra_hircus
ENSMMUG00000000090	SMG5	100	95.965	ENSCHIG00000007709	SMG5	100	95.965	Capra_hircus
ENSMMUG00000000090	SMG5	100	97.148	ENSTSYG00000004099	SMG5	100	97.148	Carlito_syrichta
ENSMMUG00000000090	SMG5	97	75.051	ENSCAPG00000003631	SMG5	100	75.597	Cavia_aperea
ENSMMUG00000000090	SMG5	100	96.267	ENSCPOG00000015696	SMG5	100	96.267	Cavia_porcellus
ENSMMUG00000000090	SMG5	100	98.130	ENSCCAG00000027409	SMG5	100	98.130	Cebus_capucinus
ENSMMUG00000000090	SMG5	100	99.803	ENSCATG00000030539	SMG5	100	99.803	Cercocebus_atys
ENSMMUG00000000090	SMG5	100	96.562	ENSCLAG00000003983	SMG5	100	96.562	Chinchilla_lanigera
ENSMMUG00000000090	SMG5	100	99.705	ENSCSAG00000002120	SMG5	100	99.705	Chlorocebus_sabaeus
ENSMMUG00000000090	SMG5	55	93.796	ENSCHOG00000008741	-	57	93.796	Choloepus_hoffmanni
ENSMMUG00000000090	SMG5	94	78.702	ENSCPBG00000025848	SMG5	100	78.398	Chrysemys_picta_bellii
ENSMMUG00000000090	SMG5	93	35.130	ENSCING00000008706	-	98	35.118	Ciona_intestinalis
ENSMMUG00000000090	SMG5	100	95.374	ENSCANG00000029208	SMG5	100	95.374	Colobus_angolensis_palliatus
ENSMMUG00000000090	SMG5	100	93.026	ENSCGRG00001006336	Smg5	100	92.633	Cricetulus_griseus_chok1gshd
ENSMMUG00000000090	SMG5	98	93.058	ENSCGRG00000005111	Smg5	100	92.649	Cricetulus_griseus_crigri
ENSMMUG00000000090	SMG5	99	65.558	ENSCSEG00000014220	smg5	92	78.014	Cynoglossus_semilaevis
ENSMMUG00000000090	SMG5	99	61.637	ENSCVAG00000000529	smg5	99	62.340	Cyprinodon_variegatus
ENSMMUG00000000090	SMG5	94	79.196	ENSDARG00000041481	smg5	99	62.996	Danio_rerio
ENSMMUG00000000090	SMG5	100	91.732	ENSDNOG00000000051	SMG5	100	91.732	Dasypus_novemcinctus
ENSMMUG00000000090	SMG5	92	36.977	ENSDNOG00000039862	-	100	35.798	Dasypus_novemcinctus
ENSMMUG00000000090	SMG5	100	93.713	ENSDORG00000010382	Smg5	100	93.517	Dipodomys_ordii
ENSMMUG00000000090	SMG5	66	35.256	FBgn0019890	Smg5	62	35.443	Drosophila_melanogaster
ENSMMUG00000000090	SMG5	82	97.087	ENSETEG00000010336	SMG5	89	97.087	Echinops_telfairi
ENSMMUG00000000090	SMG5	90	47.323	ENSEBUG00000003739	smg5	98	47.216	Eptatretus_burgeri
ENSMMUG00000000090	SMG5	100	96.949	ENSEASG00005019122	SMG5	100	96.949	Equus_asinus_asinus
ENSMMUG00000000090	SMG5	100	96.949	ENSECAG00000001389	SMG5	100	96.949	Equus_caballus
ENSMMUG00000000090	SMG5	73	98.559	ENSEEUG00000012690	SMG5	73	98.559	Erinaceus_europaeus
ENSMMUG00000000090	SMG5	99	65.823	ENSELUG00000012585	smg5	93	79.335	Esox_lucius
ENSMMUG00000000090	SMG5	100	93.898	ENSFCAG00000011783	SMG5	100	93.215	Felis_catus
ENSMMUG00000000090	SMG5	58	82.137	ENSFALG00000001166	-	99	82.245	Ficedula_albicollis
ENSMMUG00000000090	SMG5	98	93.051	ENSFDAG00000017388	SMG5	100	92.951	Fukomys_damarensis
ENSMMUG00000000090	SMG5	97	62.588	ENSFHEG00000013939	smg5	95	69.069	Fundulus_heteroclitus
ENSMMUG00000000090	SMG5	99	61.282	ENSGMOG00000007310	smg5	92	76.606	Gadus_morhua
ENSMMUG00000000090	SMG5	99	78.014	ENSGALG00000029918	-	100	77.714	Gallus_gallus
ENSMMUG00000000090	SMG5	87	75.737	ENSGAFG00000021691	smg5	87	78.588	Gambusia_affinis
ENSMMUG00000000090	SMG5	100	79.487	ENSGAGG00000016131	SMG5	100	79.297	Gopherus_agassizii
ENSMMUG00000000090	SMG5	100	99.114	ENSGGOG00000010932	SMG5	100	99.114	Gorilla_gorilla
ENSMMUG00000000090	SMG5	99	64.865	ENSHBUG00000008654	smg5	92	78.588	Haplochromis_burtoni
ENSMMUG00000000090	SMG5	100	92.927	ENSHGLG00000019152	SMG5	100	93.124	Heterocephalus_glaber_female
ENSMMUG00000000090	SMG5	90	93.100	ENSHGLG00100015948	SMG5	99	93.319	Heterocephalus_glaber_male
ENSMMUG00000000090	SMG5	87	73.594	ENSHCOG00000010229	smg5	83	78.571	Hippocampus_comes
ENSMMUG00000000090	SMG5	99	61.378	ENSIPUG00000006624	Smg5	99	61.987	Ictalurus_punctatus
ENSMMUG00000000090	SMG5	100	96.559	ENSSTOG00000001780	SMG5	100	96.559	Ictidomys_tridecemlineatus
ENSMMUG00000000090	SMG5	100	93.032	ENSJJAG00000022763	Smg5	100	92.836	Jaculus_jaculus
ENSMMUG00000000090	SMG5	94	75.682	ENSKMAG00000014586	smg5	93	78.824	Kryptolebias_marmoratus
ENSMMUG00000000090	SMG5	99	67.090	ENSLBEG00000002145	smg5	93	78.538	Labrus_bergylta
ENSMMUG00000000090	SMG5	100	64.862	ENSLACG00000010521	SMG5	100	64.862	Latimeria_chalumnae
ENSMMUG00000000090	SMG5	97	78.638	ENSLOCG00000008380	smg5	92	78.673	Lepisosteus_oculatus
ENSMMUG00000000090	SMG5	100	94.390	ENSLAFG00000006241	SMG5	100	94.390	Loxodonta_africana
ENSMMUG00000000090	SMG5	100	99.902	ENSMFAG00000045357	SMG5	100	99.902	Macaca_fascicularis
ENSMMUG00000000090	SMG5	100	99.803	ENSMNEG00000044425	SMG5	100	99.803	Macaca_nemestrina
ENSMMUG00000000090	SMG5	100	93.431	ENSMLEG00000041192	SMG5	100	93.431	Mandrillus_leucophaeus
ENSMMUG00000000090	SMG5	99	60.749	ENSMAMG00000010683	smg5	92	79.444	Mastacembelus_armatus
ENSMMUG00000000090	SMG5	99	63.977	ENSMZEG00005015815	smg5	99	65.574	Maylandia_zebra
ENSMMUG00000000090	SMG5	63	58.709	ENSMZEG00005016543	smg5	100	60.583	Maylandia_zebra
ENSMMUG00000000090	SMG5	100	92.141	ENSMAUG00000010381	Smg5	100	91.945	Mesocricetus_auratus
ENSMMUG00000000090	SMG5	54	45.826	ENSMAUG00000000043	-	96	45.053	Mesocricetus_auratus
ENSMMUG00000000090	SMG5	100	97.244	ENSMICG00000002257	SMG5	100	97.244	Microcebus_murinus
ENSMMUG00000000090	SMG5	100	91.765	ENSMOCG00000016590	Smg5	100	91.471	Microtus_ochrogaster
ENSMMUG00000000090	SMG5	99	59.216	ENSMMOG00000017199	smg5	93	74.292	Mola_mola
ENSMMUG00000000090	SMG5	87	89.977	ENSMODG00000016901	SMG5	98	90.428	Monodelphis_domestica
ENSMMUG00000000090	SMG5	97	35.030	ENSMODG00000004511	-	99	34.328	Monodelphis_domestica
ENSMMUG00000000090	SMG5	93	37.317	ENSMODG00000004532	-	83	37.940	Monodelphis_domestica
ENSMMUG00000000090	SMG5	81	38.407	ENSMODG00000004735	-	86	39.733	Monodelphis_domestica
ENSMMUG00000000090	SMG5	79	37.783	ENSMODG00000010675	-	84	37.931	Monodelphis_domestica
ENSMMUG00000000090	SMG5	99	60.711	ENSMALG00000010375	smg5	93	75.352	Monopterus_albus
ENSMMUG00000000090	SMG5	100	92.633	MGP_CAROLIEiJ_G0025163	Smg5	100	98.883	Mus_caroli
ENSMMUG00000000090	SMG5	100	92.829	ENSMUSG00000001415	Smg5	99	98.883	Mus_musculus
ENSMMUG00000000090	SMG5	100	92.444	MGP_PahariEiJ_G0026606	Smg5	100	98.883	Mus_pahari
ENSMMUG00000000090	SMG5	100	92.633	MGP_SPRETEiJ_G0026104	Smg5	100	98.883	Mus_spretus
ENSMMUG00000000090	SMG5	94	92.842	ENSMPUG00000004546	SMG5	100	92.211	Mustela_putorius_furo
ENSMMUG00000000090	SMG5	100	95.285	ENSMLUG00000008518	SMG5	100	95.285	Myotis_lucifugus
ENSMMUG00000000090	SMG5	100	94.100	ENSNGAG00000020706	Smg5	100	93.805	Nannospalax_galili
ENSMMUG00000000090	SMG5	98	44.828	ENSNGAG00000012101	-	98	45.226	Nannospalax_galili
ENSMMUG00000000090	SMG5	97	63.802	ENSNBRG00000004332	smg5	98	65.789	Neolamprologus_brichardi
ENSMMUG00000000090	SMG5	100	99.016	ENSNLEG00000012439	SMG5	100	99.016	Nomascus_leucogenys
ENSMMUG00000000090	SMG5	100	87.906	ENSMEUG00000012834	SMG5	100	87.021	Notamacropus_eugenii
ENSMMUG00000000090	SMG5	100	94.390	ENSOPRG00000009152	SMG5	100	94.390	Ochotona_princeps
ENSMMUG00000000090	SMG5	100	95.669	ENSODEG00000012237	SMG5	100	95.669	Octodon_degus
ENSMMUG00000000090	SMG5	99	60.053	ENSONIG00000008632	smg5	92	78.588	Oreochromis_niloticus
ENSMMUG00000000090	SMG5	98	95.665	ENSOCUG00000012886	SMG5	100	95.665	Oryctolagus_cuniculus
ENSMMUG00000000090	SMG5	89	41.280	ENSOCUG00000023338	-	99	40.909	Oryctolagus_cuniculus
ENSMMUG00000000090	SMG5	99	64.522	ENSORLG00020013127	smg5	99	66.145	Oryzias_latipes_hni
ENSMMUG00000000090	SMG5	99	64.237	ENSORLG00015019014	smg5	99	65.951	Oryzias_latipes_hsok
ENSMMUG00000000090	SMG5	82	60.345	ENSOMEG00000021330	smg5	92	60.814	Oryzias_melastigma
ENSMMUG00000000090	SMG5	100	95.177	ENSOGAG00000004966	SMG5	100	95.177	Otolemur_garnettii
ENSMMUG00000000090	SMG5	99	44.477	ENSOARG00000011963	-	99	44.170	Ovis_aries
ENSMMUG00000000090	SMG5	100	96.063	ENSOARG00000005778	SMG5	100	96.063	Ovis_aries
ENSMMUG00000000090	SMG5	100	98.819	ENSPPAG00000011996	SMG5	100	98.819	Pan_paniscus
ENSMMUG00000000090	SMG5	98	93.750	ENSPPRG00000011901	SMG5	100	93.044	Panthera_pardus
ENSMMUG00000000090	SMG5	99	85.572	ENSPTIG00000007892	SMG5	98	85.526	Panthera_tigris_altaica
ENSMMUG00000000090	SMG5	100	99.016	ENSPTRG00000049282	-	100	99.016	Pan_troglodytes
ENSMMUG00000000090	SMG5	100	99.016	ENSPTRG00000023925	SMG5	100	99.016	Pan_troglodytes
ENSMMUG00000000090	SMG5	100	99.803	ENSPANG00000011201	SMG5	100	99.803	Papio_anubis
ENSMMUG00000000090	SMG5	99	66.275	ENSPKIG00000009402	smg5	99	66.732	Paramormyrops_kingsleyae
ENSMMUG00000000090	SMG5	98	80.834	ENSPSIG00000015198	SMG5	100	80.476	Pelodiscus_sinensis
ENSMMUG00000000090	SMG5	99	60.422	ENSPMGG00000010465	smg5	99	60.813	Periophthalmus_magnuspinnatus
ENSMMUG00000000090	SMG5	100	93.320	ENSPEMG00000001819	Smg5	100	92.927	Peromyscus_maniculatus_bairdii
ENSMMUG00000000090	SMG5	56	46.060	ENSPEMG00000010022	-	95	45.614	Peromyscus_maniculatus_bairdii
ENSMMUG00000000090	SMG5	99	49.466	ENSPMAG00000000410	smg5	100	50.239	Petromyzon_marinus
ENSMMUG00000000090	SMG5	100	89.391	ENSPCIG00000018938	SMG5	100	89.784	Phascolarctos_cinereus
ENSMMUG00000000090	SMG5	94	75.964	ENSPFOG00000010191	smg5	92	78.824	Poecilia_formosa
ENSMMUG00000000090	SMG5	94	75.964	ENSPLAG00000009332	smg5	92	78.824	Poecilia_latipinna
ENSMMUG00000000090	SMG5	94	75.964	ENSPMEG00000014105	smg5	92	78.824	Poecilia_mexicana
ENSMMUG00000000090	SMG5	94	75.964	ENSPREG00000017713	smg5	92	78.824	Poecilia_reticulata
ENSMMUG00000000090	SMG5	100	99.311	ENSPPYG00000000723	SMG5	100	99.311	Pongo_abelii
ENSMMUG00000000090	SMG5	75	97.790	ENSPCAG00000008412	SMG5	81	97.790	Procavia_capensis
ENSMMUG00000000090	SMG5	100	97.441	ENSPCOG00000004741	SMG5	100	97.441	Propithecus_coquereli
ENSMMUG00000000090	SMG5	100	86.024	ENSPVAG00000016748	SMG5	100	86.024	Pteropus_vampyrus
ENSMMUG00000000090	SMG5	99	59.614	ENSPNYG00000013397	smg5	99	61.327	Pundamilia_nyererei
ENSMMUG00000000090	SMG5	99	62.534	ENSPNAG00000028363	smg5	99	60.854	Pygocentrus_nattereri
ENSMMUG00000000090	SMG5	100	92.829	ENSRNOG00000019590	Smg5	100	92.436	Rattus_norvegicus
ENSMMUG00000000090	SMG5	100	99.508	ENSRBIG00000027428	SMG5	100	99.508	Rhinopithecus_bieti
ENSMMUG00000000090	SMG5	100	99.409	ENSRROG00000030035	SMG5	100	99.409	Rhinopithecus_roxellana
ENSMMUG00000000090	SMG5	100	98.130	ENSSBOG00000033339	SMG5	100	98.130	Saimiri_boliviensis_boliviensis
ENSMMUG00000000090	SMG5	64	39.766	ENSSHAG00000000935	-	92	40.854	Sarcophilus_harrisii
ENSMMUG00000000090	SMG5	98	88.989	ENSSHAG00000014163	SMG5	100	89.389	Sarcophilus_harrisii
ENSMMUG00000000090	SMG5	88	39.578	ENSSHAG00000000561	-	87	39.578	Sarcophilus_harrisii
ENSMMUG00000000090	SMG5	99	34.694	ENSSHAG00000009572	-	80	42.998	Sarcophilus_harrisii
ENSMMUG00000000090	SMG5	99	66.765	ENSSFOG00015024175	smg5	93	78.043	Scleropages_formosus
ENSMMUG00000000090	SMG5	93	76.744	ENSSMAG00000013059	smg5	93	78.353	Scophthalmus_maximus
ENSMMUG00000000090	SMG5	92	75.751	ENSSDUG00000007122	smg5	92	77.103	Seriola_dumerili
ENSMMUG00000000090	SMG5	99	60.866	ENSSLDG00000011418	smg5	92	77.830	Seriola_lalandi_dorsalis
ENSMMUG00000000090	SMG5	90	81.134	ENSSARG00000012484	SMG5	100	81.134	Sorex_araneus
ENSMMUG00000000090	SMG5	94	77.553	ENSSPUG00000002260	SMG5	100	76.263	Sphenodon_punctatus
ENSMMUG00000000090	SMG5	92	76.815	ENSSPAG00000014266	smg5	93	77.752	Stegastes_partitus
ENSMMUG00000000090	SMG5	99	75.149	ENSSSCG00000039308	-	100	75.271	Sus_scrofa
ENSMMUG00000000090	SMG5	100	97.047	ENSSSCG00000006490	-	100	97.047	Sus_scrofa
ENSMMUG00000000090	SMG5	99	80.613	ENSTGUG00000003748	-	100	80.371	Taeniopygia_guttata
ENSMMUG00000000090	SMG5	99	64.513	ENSTRUG00000012580	smg5	99	64.479	Takifugu_rubripes
ENSMMUG00000000090	SMG5	99	65.310	ENSTNIG00000010303	smg5	92	74.713	Tetraodon_nigroviridis
ENSMMUG00000000090	SMG5	61	100.000	ENSTBEG00000002777	SMG5	60	100.000	Tupaia_belangeri
ENSMMUG00000000090	SMG5	100	91.732	ENSTTRG00000001401	SMG5	100	91.732	Tursiops_truncatus
ENSMMUG00000000090	SMG5	100	93.406	ENSUAMG00000013721	SMG5	100	92.815	Ursus_americanus
ENSMMUG00000000090	SMG5	98	88.945	ENSUMAG00000018041	SMG5	97	88.342	Ursus_maritimus
ENSMMUG00000000090	SMG5	98	86.781	ENSVPAG00000009446	SMG5	99	86.781	Vicugna_pacos
ENSMMUG00000000090	SMG5	100	94.291	ENSVVUG00000005887	SMG5	100	93.701	Vulpes_vulpes
ENSMMUG00000000090	SMG5	77	65.952	ENSXETG00000033791	SMG5	99	65.195	Xenopus_tropicalis
ENSMMUG00000000090	SMG5	76	75.510	ENSXCOG00000004379	smg5	95	68.681	Xiphophorus_couchianus
ENSMMUG00000000090	SMG5	94	75.283	ENSXMAG00000013499	smg5	92	78.118	Xiphophorus_maculatus