EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMMUG00000007380 (Gene tree)
Gene ID: 702082
Gene Symbol: CPSF1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Macaca_mulatta
Status: putative
Strand: Minus strand
Length: 17463 bases
Position: chr8:143637901-143655363
Accession: 702082
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMUP00000051552	CPSF_A	PF03178.15	5.9e-92	1	1
ENSMMUP00000057758	CPSF_A	PF03178.15	1e-91	1	1
ENSMMUP00000009686	CPSF_A	PF03178.15	1.1e-91	1	1
ENSMMUP00000047664	CPSF_A	PF03178.15	1.5e-68	1	2
ENSMMUP00000047664	CPSF_A	PF03178.15	1.5e-68	2	2
ENSMMUP00000048575	CPSF_A	PF03178.15	2.4e-33	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMUT00000010324	-	4393	-	ENSMMUP00000009686	1442 (aa)	-	H9FTK0
ENSMMUT00000065894	-	4284	-	ENSMMUP00000057758	1427 (aa)	-	A0A1D5RBR7
ENSMMUT00000059617	-	3285	-	ENSMMUP00000051552	1094 (aa)	-	A0A1D5QU22
ENSMMUT00000068320	-	615	-	ENSMMUP00000048575	204 (aa)	-	A0A1D5QKK2
ENSMMUT00000061740	-	4161	-	ENSMMUP00000047664	1386 (aa)	-	A0A1D5QHZ2

Gene Model

Click here to download ENSMMUG00000007380's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMMUG00000007380's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMUG00000007380	CPSF1	100	99.238	ENSG00000071894	CPSF1	100	99.238	Homo_sapiens
ENSMMUG00000007380	CPSF1	100	80.556	ENSAPOG00000019621	cpsf1	100	77.905	Acanthochromis_polyacanthus
ENSMMUG00000007380	CPSF1	97	94.782	ENSAMEG00000005557	CPSF1	100	94.782	Ailuropoda_melanoleuca
ENSMMUG00000007380	CPSF1	100	80.093	ENSACIG00000006112	cpsf1	100	77.855	Amphilophus_citrinellus
ENSMMUG00000007380	CPSF1	100	80.556	ENSAOCG00000007120	cpsf1	100	79.103	Amphiprion_ocellaris
ENSMMUG00000007380	CPSF1	100	80.556	ENSAPEG00000005755	cpsf1	100	79.394	Amphiprion_percula
ENSMMUG00000007380	CPSF1	100	80.093	ENSATEG00000011097	cpsf1	100	77.950	Anabas_testudineus
ENSMMUG00000007380	CPSF1	88	89.137	ENSACAG00000009655	CPSF1	100	81.548	Anolis_carolinensis
ENSMMUG00000007380	CPSF1	100	98.890	ENSANAG00000036514	CPSF1	100	98.890	Aotus_nancymaae
ENSMMUG00000007380	CPSF1	100	79.167	ENSACLG00000012231	cpsf1	99	78.536	Astatotilapia_calliptera
ENSMMUG00000007380	CPSF1	100	79.630	ENSAMXG00000008485	cpsf1	100	74.876	Astyanax_mexicanus
ENSMMUG00000007380	CPSF1	98	96.519	ENSBTAG00000008355	CPSF1	100	94.672	Bos_taurus
ENSMMUG00000007380	CPSF1	99	33.333	WBGene00022301	cpsf-1	100	40.282	Caenorhabditis_elegans
ENSMMUG00000007380	CPSF1	100	98.682	ENSCJAG00000021421	CPSF1	100	98.682	Callithrix_jacchus
ENSMMUG00000007380	CPSF1	97	96.212	ENSCAFG00000001600	CPSF1	100	96.480	Canis_familiaris
ENSMMUG00000007380	CPSF1	100	96.401	ENSCAFG00020020821	CPSF1	100	96.401	Canis_lupus_dingo
ENSMMUG00000007380	CPSF1	98	95.886	ENSCHIG00000015833	CPSF1	100	90.765	Capra_hircus
ENSMMUG00000007380	CPSF1	100	97.781	ENSTSYG00000028560	CPSF1	99	98.830	Carlito_syrichta
ENSMMUG00000007380	CPSF1	97	95.125	ENSCAPG00000014921	CPSF1	99	95.125	Cavia_aperea
ENSMMUG00000007380	CPSF1	100	94.872	ENSCPOG00000011448	CPSF1	100	94.872	Cavia_porcellus
ENSMMUG00000007380	CPSF1	100	98.960	ENSCCAG00000037658	CPSF1	100	98.960	Cebus_capucinus
ENSMMUG00000007380	CPSF1	100	100.000	ENSCATG00000037234	CPSF1	100	100.000	Cercocebus_atys
ENSMMUG00000007380	CPSF1	100	96.602	ENSCLAG00000012166	CPSF1	100	96.602	Chinchilla_lanigera
ENSMMUG00000007380	CPSF1	100	99.723	ENSCSAG00000008502	CPSF1	100	99.723	Chlorocebus_sabaeus
ENSMMUG00000007380	CPSF1	99	87.404	ENSCPBG00000018910	CPSF1	96	87.404	Chrysemys_picta_bellii
ENSMMUG00000007380	CPSF1	92	54.459	ENSCING00000000514	-	100	48.422	Ciona_intestinalis
ENSMMUG00000007380	CPSF1	98	51.746	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSMMUG00000007380	CPSF1	100	99.020	ENSCANG00000032760	CPSF1	100	99.020	Colobus_angolensis_palliatus
ENSMMUG00000007380	CPSF1	100	96.463	ENSCGRG00001016344	Cpsf1	100	96.463	Cricetulus_griseus_chok1gshd
ENSMMUG00000007380	CPSF1	100	94.383	ENSCGRG00000003118	Cpsf1	100	94.383	Cricetulus_griseus_crigri
ENSMMUG00000007380	CPSF1	100	77.770	ENSCSEG00000013464	cpsf1	100	77.561	Cynoglossus_semilaevis
ENSMMUG00000007380	CPSF1	100	81.463	ENSCVAG00000014059	cpsf1	100	81.463	Cyprinodon_variegatus
ENSMMUG00000007380	CPSF1	56	30.065	ENSCVAG00000019531	ddb1	58	30.065	Cyprinodon_variegatus
ENSMMUG00000007380	CPSF1	100	79.821	ENSDARG00000034178	cpsf1	100	79.890	Danio_rerio
ENSMMUG00000007380	CPSF1	59	95.652	ENSDNOG00000043654	CPSF1	94	95.652	Dasypus_novemcinctus
ENSMMUG00000007380	CPSF1	97	95.914	ENSDORG00000006278	Cpsf1	99	95.914	Dipodomys_ordii
ENSMMUG00000007380	CPSF1	97	54.573	FBgn0024698	Cpsf160	100	45.393	Drosophila_melanogaster
ENSMMUG00000007380	CPSF1	83	97.315	ENSETEG00000006022	CPSF1	83	97.315	Echinops_telfairi
ENSMMUG00000007380	CPSF1	90	62.245	ENSEBUG00000006844	-	97	74.541	Eptatretus_burgeri
ENSMMUG00000007380	CPSF1	100	96.955	ENSEASG00005010774	CPSF1	100	96.955	Equus_asinus_asinus
ENSMMUG00000007380	CPSF1	100	96.955	ENSECAG00000022209	CPSF1	100	96.955	Equus_caballus
ENSMMUG00000007380	CPSF1	100	94.671	ENSEEUG00000000471	CPSF1	100	94.671	Erinaceus_europaeus
ENSMMUG00000007380	CPSF1	100	79.630	ENSELUG00000012271	cpsf1	100	78.562	Esox_lucius
ENSMMUG00000007380	CPSF1	100	96.602	ENSFDAG00000016060	CPSF1	100	96.602	Fukomys_damarensis
ENSMMUG00000007380	CPSF1	98	79.233	ENSFHEG00000016801	cpsf1	100	76.838	Fundulus_heteroclitus
ENSMMUG00000007380	CPSF1	98	81.150	ENSGMOG00000000796	cpsf1	100	78.069	Gadus_morhua
ENSMMUG00000007380	CPSF1	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSMMUG00000007380	CPSF1	56	30.065	ENSGAFG00000013142	ddb1	57	30.065	Gambusia_affinis
ENSMMUG00000007380	CPSF1	100	78.704	ENSGACG00000008703	cpsf1	100	78.404	Gasterosteus_aculeatus
ENSMMUG00000007380	CPSF1	97	89.137	ENSGAGG00000004276	CPSF1	98	87.416	Gopherus_agassizii
ENSMMUG00000007380	CPSF1	100	99.376	ENSGGOG00000016185	CPSF1	100	99.376	Gorilla_gorilla
ENSMMUG00000007380	CPSF1	100	62.745	ENSGGOG00000040487	-	100	70.833	Gorilla_gorilla
ENSMMUG00000007380	CPSF1	100	79.804	ENSHBUG00000018900	cpsf1	100	79.525	Haplochromis_burtoni
ENSMMUG00000007380	CPSF1	100	96.463	ENSHGLG00000016139	CPSF1	100	96.463	Heterocephalus_glaber_female
ENSMMUG00000007380	CPSF1	100	96.394	ENSHGLG00100009750	CPSF1	100	96.394	Heterocephalus_glaber_male
ENSMMUG00000007380	CPSF1	100	79.233	ENSHCOG00000018509	cpsf1	100	76.866	Hippocampus_comes
ENSMMUG00000007380	CPSF1	100	80.093	ENSIPUG00000011259	cpsf1	100	76.632	Ictalurus_punctatus
ENSMMUG00000007380	CPSF1	97	96.500	ENSSTOG00000009957	CPSF1	99	96.500	Ictidomys_tridecemlineatus
ENSMMUG00000007380	CPSF1	100	96.255	ENSJJAG00000023002	Cpsf1	100	96.255	Jaculus_jaculus
ENSMMUG00000007380	CPSF1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSMMUG00000007380	CPSF1	56	30.065	ENSKMAG00000002315	ddb1	58	30.065	Kryptolebias_marmoratus
ENSMMUG00000007380	CPSF1	98	81.470	ENSLBEG00000003601	cpsf1	100	77.617	Labrus_bergylta
ENSMMUG00000007380	CPSF1	100	82.407	ENSLACG00000000233	CPSF1	92	81.370	Latimeria_chalumnae
ENSMMUG00000007380	CPSF1	100	81.662	ENSLOCG00000008484	cpsf1	100	78.261	Lepisosteus_oculatus
ENSMMUG00000007380	CPSF1	97	95.351	ENSLAFG00000022601	CPSF1	100	95.351	Loxodonta_africana
ENSMMUG00000007380	CPSF1	100	100.000	ENSMFAG00000037013	CPSF1	100	100.000	Macaca_fascicularis
ENSMMUG00000007380	CPSF1	100	100.000	ENSMNEG00000043564	CPSF1	100	100.000	Macaca_nemestrina
ENSMMUG00000007380	CPSF1	100	100.000	ENSMLEG00000043010	CPSF1	100	100.000	Mandrillus_leucophaeus
ENSMMUG00000007380	CPSF1	98	82.109	ENSMAMG00000003803	cpsf1	100	78.311	Mastacembelus_armatus
ENSMMUG00000007380	CPSF1	100	79.167	ENSMZEG00005001168	cpsf1	100	77.358	Maylandia_zebra
ENSMMUG00000007380	CPSF1	100	96.255	ENSMAUG00000003601	Cpsf1	100	96.255	Mesocricetus_auratus
ENSMMUG00000007380	CPSF1	100	97.365	ENSMICG00000015767	CPSF1	100	97.365	Microcebus_murinus
ENSMMUG00000007380	CPSF1	100	96.463	ENSMOCG00000022758	Cpsf1	100	96.463	Microtus_ochrogaster
ENSMMUG00000007380	CPSF1	100	78.838	ENSMMOG00000021245	cpsf1	100	78.838	Mola_mola
ENSMMUG00000007380	CPSF1	100	92.966	ENSMODG00000010755	CPSF1	100	92.966	Monodelphis_domestica
ENSMMUG00000007380	CPSF1	100	81.150	ENSMALG00000020545	cpsf1	100	77.537	Monopterus_albus
ENSMMUG00000007380	CPSF1	100	96.533	MGP_CAROLIEiJ_G0019936	Cpsf1	100	96.533	Mus_caroli
ENSMMUG00000007380	CPSF1	100	96.463	ENSMUSG00000034022	Cpsf1	100	96.463	Mus_musculus
ENSMMUG00000007380	CPSF1	100	96.463	MGP_PahariEiJ_G0019946	Cpsf1	100	96.463	Mus_pahari
ENSMMUG00000007380	CPSF1	100	96.463	MGP_SPRETEiJ_G0020839	Cpsf1	100	96.463	Mus_spretus
ENSMMUG00000007380	CPSF1	94	95.630	ENSMPUG00000006419	CPSF1	93	95.630	Mustela_putorius_furo
ENSMMUG00000007380	CPSF1	78	97.484	ENSMLUG00000000667	-	100	96.667	Myotis_lucifugus
ENSMMUG00000007380	CPSF1	100	96.255	ENSNGAG00000022460	Cpsf1	100	96.255	Nannospalax_galili
ENSMMUG00000007380	CPSF1	100	79.167	ENSNBRG00000000813	cpsf1	100	75.209	Neolamprologus_brichardi
ENSMMUG00000007380	CPSF1	100	99.020	ENSNLEG00000010633	-	100	99.020	Nomascus_leucogenys
ENSMMUG00000007380	CPSF1	85	96.512	ENSMEUG00000014922	CPSF1	85	96.512	Notamacropus_eugenii
ENSMMUG00000007380	CPSF1	61	96.939	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSMMUG00000007380	CPSF1	100	96.741	ENSODEG00000013995	CPSF1	100	96.741	Octodon_degus
ENSMMUG00000007380	CPSF1	100	79.723	ENSONIG00000007676	cpsf1	100	79.516	Oreochromis_niloticus
ENSMMUG00000007380	CPSF1	60	89.583	ENSOANG00000010716	CPSF1	88	91.429	Ornithorhynchus_anatinus
ENSMMUG00000007380	CPSF1	100	77.778	ENSORLG00000013544	cpsf1	92	87.243	Oryzias_latipes
ENSMMUG00000007380	CPSF1	100	77.778	ENSORLG00020021693	cpsf1	92	87.243	Oryzias_latipes_hni
ENSMMUG00000007380	CPSF1	100	77.778	ENSORLG00015009979	cpsf1	100	77.498	Oryzias_latipes_hsok
ENSMMUG00000007380	CPSF1	98	79.872	ENSOMEG00000011849	cpsf1	100	77.413	Oryzias_melastigma
ENSMMUG00000007380	CPSF1	100	97.503	ENSOGAG00000000315	CPSF1	100	97.503	Otolemur_garnettii
ENSMMUG00000007380	CPSF1	51	84.462	ENSOARG00000013594	-	89	92.063	Ovis_aries
ENSMMUG00000007380	CPSF1	100	99.445	ENSPPAG00000019280	CPSF1	100	99.445	Pan_paniscus
ENSMMUG00000007380	CPSF1	100	61.765	ENSPTRG00000052516	-	100	69.444	Pan_troglodytes
ENSMMUG00000007380	CPSF1	100	99.020	ENSPTRG00000051253	-	100	99.020	Pan_troglodytes
ENSMMUG00000007380	CPSF1	100	99.445	ENSPTRG00000049288	-	100	99.445	Pan_troglodytes
ENSMMUG00000007380	CPSF1	100	99.510	ENSPANG00000015005	CPSF1	100	99.928	Papio_anubis
ENSMMUG00000007380	CPSF1	100	81.481	ENSPKIG00000002582	cpsf1	100	80.895	Paramormyrops_kingsleyae
ENSMMUG00000007380	CPSF1	100	75.926	ENSPMGG00000022177	-	100	84.259	Periophthalmus_magnuspinnatus
ENSMMUG00000007380	CPSF1	100	92.897	ENSPCIG00000009035	CPSF1	100	92.897	Phascolarctos_cinereus
ENSMMUG00000007380	CPSF1	98	78.914	ENSPFOG00000012870	cpsf1	100	76.252	Poecilia_formosa
ENSMMUG00000007380	CPSF1	64	30.827	ENSPLAG00000017227	ddb1	57	30.065	Poecilia_latipinna
ENSMMUG00000007380	CPSF1	64	30.827	ENSPMEG00000011398	ddb1	57	30.065	Poecilia_mexicana
ENSMMUG00000007380	CPSF1	98	78.914	ENSPREG00000016307	cpsf1	100	75.997	Poecilia_reticulata
ENSMMUG00000007380	CPSF1	56	30.065	ENSPREG00000004440	ddb1	59	30.065	Poecilia_reticulata
ENSMMUG00000007380	CPSF1	94	99.636	ENSPPYG00000018973	CPSF1	100	90.985	Pongo_abelii
ENSMMUG00000007380	CPSF1	91	94.886	ENSPCAG00000011541	CPSF1	94	94.886	Procavia_capensis
ENSMMUG00000007380	CPSF1	98	98.722	ENSPCOG00000020001	CPSF1	100	95.098	Propithecus_coquereli
ENSMMUG00000007380	CPSF1	91	98.571	ENSPVAG00000006761	CPSF1	91	98.571	Pteropus_vampyrus
ENSMMUG00000007380	CPSF1	100	79.167	ENSPNYG00000004906	cpsf1	100	78.483	Pundamilia_nyererei
ENSMMUG00000007380	CPSF1	97	80.831	ENSPNAG00000024395	cpsf1	100	75.276	Pygocentrus_nattereri
ENSMMUG00000007380	CPSF1	100	96.533	ENSRNOG00000030705	Cpsf1	100	96.533	Rattus_norvegicus
ENSMMUG00000007380	CPSF1	100	99.792	ENSRBIG00000044907	CPSF1	100	99.792	Rhinopithecus_bieti
ENSMMUG00000007380	CPSF1	100	99.723	ENSRROG00000044861	CPSF1	100	99.723	Rhinopithecus_roxellana
ENSMMUG00000007380	CPSF1	97	98.709	ENSSBOG00000027177	CPSF1	100	98.709	Saimiri_boliviensis_boliviensis
ENSMMUG00000007380	CPSF1	100	92.621	ENSSHAG00000006500	CPSF1	100	92.621	Sarcophilus_harrisii
ENSMMUG00000007380	CPSF1	100	81.944	ENSSFOG00015004606	cpsf1	100	81.164	Scleropages_formosus
ENSMMUG00000007380	CPSF1	100	80.556	ENSSMAG00000020547	cpsf1	100	77.808	Scophthalmus_maximus
ENSMMUG00000007380	CPSF1	100	80.093	ENSSDUG00000001100	cpsf1	100	79.749	Seriola_dumerili
ENSMMUG00000007380	CPSF1	100	80.093	ENSSLDG00000003619	cpsf1	100	79.804	Seriola_lalandi_dorsalis
ENSMMUG00000007380	CPSF1	89	100.000	ENSSARG00000003643	CPSF1	92	100.000	Sorex_araneus
ENSMMUG00000007380	CPSF1	100	88.725	ENSSPUG00000014396	CPSF1	100	88.725	Sphenodon_punctatus
ENSMMUG00000007380	CPSF1	100	80.093	ENSSPAG00000005349	cpsf1	100	78.026	Stegastes_partitus
ENSMMUG00000007380	CPSF1	100	95.848	ENSSSCG00000005906	CPSF1	100	95.848	Sus_scrofa
ENSMMUG00000007380	CPSF1	93	84.436	ENSTRUG00000013134	cpsf1	99	77.692	Takifugu_rubripes
ENSMMUG00000007380	CPSF1	100	78.625	ENSTNIG00000014027	cpsf1	100	78.419	Tetraodon_nigroviridis
ENSMMUG00000007380	CPSF1	77	89.138	ENSTBEG00000001756	CPSF1	91	89.138	Tupaia_belangeri
ENSMMUG00000007380	CPSF1	100	88.426	ENSTTRG00000001937	CPSF1	90	96.546	Tursiops_truncatus
ENSMMUG00000007380	CPSF1	97	96.569	ENSUAMG00000006476	CPSF1	98	96.569	Ursus_americanus
ENSMMUG00000007380	CPSF1	67	54.967	ENSVPAG00000000157	-	50	93.991	Vicugna_pacos
ENSMMUG00000007380	CPSF1	100	93.627	ENSVVUG00000005940	-	100	93.627	Vulpes_vulpes
ENSMMUG00000007380	CPSF1	100	77.786	ENSXCOG00000003608	cpsf1	100	77.577	Xiphophorus_couchianus
ENSMMUG00000007380	CPSF1	100	77.184	ENSXMAG00000005798	cpsf1	100	77.115	Xiphophorus_maculatus
ENSMMUG00000007380	CPSF1	56	30.065	ENSXMAG00000000022	ddb1	57	30.065	Xiphophorus_maculatus