EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMMUG00000011562 (Gene tree)
Gene ID: 696409
Gene Symbol: PABPC5
Alias: -
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Macaca_mulatta
Status: putative
Strand: Plus strand
Length: 4006 bases
Position: chrX:85524877-85528882
Accession: 696409
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMUP00000015191	RRM_5	PF13893.6	5.3e-13	1	2
ENSMMUP00000015191	RRM_5	PF13893.6	5.3e-13	2	2
ENSMMUP00000015191	RRM_1	PF00076.22	3.7e-77	1	4
ENSMMUP00000015191	RRM_1	PF00076.22	3.7e-77	2	4
ENSMMUP00000015191	RRM_1	PF00076.22	3.7e-77	3	4
ENSMMUP00000015191	RRM_1	PF00076.22	3.7e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMUT00000016209	-	3466	XM_015127767	ENSMMUP00000015191	382 (aa)	XP_014983253	Q7JGR2

Gene Model

Click here to download ENSMMUG00000011562's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcc03013	RNA transport	KEGG
mcc03015	mRNA surveillance pathway	KEGG
mcc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMMUG00000011562's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMMUG00000011562	PABPC5	93	59.694	ENSMMUG00000037681	-	98	59.375
ENSMMUG00000011562	PABPC5	98	64.420	ENSMMUG00000017786	PABPC1	68	64.928
ENSMMUG00000011562	PABPC5	96	61.708	ENSMMUG00000020835	PABPC3	77	61.798
ENSMMUG00000011562	PABPC5	93	59.694	ENSMMUG00000039929	-	98	59.375
ENSMMUG00000011562	PABPC5	64	30.357	ENSMMUG00000006561	TRNAU1AP	55	30.061
ENSMMUG00000011562	PABPC5	94	35.802	ENSMMUG00000010038	ELAVL2	88	35.802
ENSMMUG00000011562	PABPC5	93	59.694	ENSMMUG00000009740	-	98	59.375
ENSMMUG00000011562	PABPC5	95	64.935	ENSMMUG00000047411	-	62	64.935
ENSMMUG00000011562	PABPC5	96	66.942	ENSMMUG00000007497	PABPC4	57	67.135
ENSMMUG00000011562	PABPC5	91	43.931	ENSMMUG00000041053	-	52	43.931

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMUG00000011562	PABPC5	100	99.738	ENSG00000174740	PABPC5	100	99.738	Homo_sapiens
ENSMMUG00000011562	PABPC5	99	97.375	ENSAMEG00000020114	PABPC5	100	97.375	Ailuropoda_melanoleuca
ENSMMUG00000011562	PABPC5	100	99.738	ENSANAG00000005063	PABPC5	100	99.738	Aotus_nancymaae
ENSMMUG00000011562	PABPC5	99	96.588	ENSBTAG00000019942	PABPC5	99	96.588	Bos_taurus
ENSMMUG00000011562	PABPC5	100	99.215	ENSCJAG00000003665	PABPC5	100	99.215	Callithrix_jacchus
ENSMMUG00000011562	PABPC5	99	96.850	ENSCAFG00000017452	PABPC5	99	96.850	Canis_familiaris
ENSMMUG00000011562	PABPC5	99	96.588	ENSCHIG00000019004	PABPC5	99	96.588	Capra_hircus
ENSMMUG00000011562	PABPC5	99	97.638	ENSTSYG00000036351	PABPC5	99	97.638	Carlito_syrichta
ENSMMUG00000011562	PABPC5	99	88.421	ENSCAPG00000010714	PABPC5	99	88.421	Cavia_aperea
ENSMMUG00000011562	PABPC5	99	94.488	ENSCPOG00000002555	PABPC5	99	94.488	Cavia_porcellus
ENSMMUG00000011562	PABPC5	100	99.738	ENSCCAG00000032154	PABPC5	100	99.738	Cebus_capucinus
ENSMMUG00000011562	PABPC5	100	100.000	ENSCATG00000043083	PABPC5	100	100.000	Cercocebus_atys
ENSMMUG00000011562	PABPC5	99	95.801	ENSCLAG00000000647	PABPC5	99	95.801	Chinchilla_lanigera
ENSMMUG00000011562	PABPC5	100	100.000	ENSCSAG00000000065	PABPC5	100	100.000	Chlorocebus_sabaeus
ENSMMUG00000011562	PABPC5	100	100.000	ENSCANG00000011473	PABPC5	100	100.000	Colobus_angolensis_palliatus
ENSMMUG00000011562	PABPC5	99	94.488	ENSCGRG00000018699	Pabpc5	99	94.488	Cricetulus_griseus_crigri
ENSMMUG00000011562	PABPC5	99	78.534	ENSETEG00000011832	PABPC5	99	78.534	Echinops_telfairi
ENSMMUG00000011562	PABPC5	99	97.375	ENSEASG00005014396	PABPC5	99	97.375	Equus_asinus_asinus
ENSMMUG00000011562	PABPC5	99	97.375	ENSECAG00000003452	PABPC5	99	97.375	Equus_caballus
ENSMMUG00000011562	PABPC5	99	97.113	ENSFCAG00000004998	PABPC5	99	97.113	Felis_catus
ENSMMUG00000011562	PABPC5	99	96.325	ENSFDAG00000000126	PABPC5	99	96.325	Fukomys_damarensis
ENSMMUG00000011562	PABPC5	100	99.738	ENSGGOG00000007622	PABPC5	100	99.738	Gorilla_gorilla
ENSMMUG00000011562	PABPC5	95	97.235	ENSJJAG00000011960	Pabpc5	99	97.235	Jaculus_jaculus
ENSMMUG00000011562	PABPC5	100	100.000	ENSMFAG00000024561	PABPC5	100	100.000	Macaca_fascicularis
ENSMMUG00000011562	PABPC5	100	100.000	ENSMNEG00000037604	PABPC5	100	100.000	Macaca_nemestrina
ENSMMUG00000011562	PABPC5	100	100.000	ENSMLEG00000028318	PABPC5	100	100.000	Mandrillus_leucophaeus
ENSMMUG00000011562	PABPC5	99	96.325	ENSMICG00000041706	PABPC5	99	96.325	Microcebus_murinus
ENSMMUG00000011562	PABPC5	99	95.801	ENSMOCG00000001554	Pabpc5	99	95.801	Microtus_ochrogaster
ENSMMUG00000011562	PABPC5	99	94.723	MGP_CAROLIEiJ_G0033367	Pabpc5	99	94.723	Mus_caroli
ENSMMUG00000011562	PABPC5	99	95.251	ENSMUSG00000034732	Pabpc5	99	95.251	Mus_musculus
ENSMMUG00000011562	PABPC5	99	95.538	MGP_PahariEiJ_G0031908	Pabpc5	99	95.538	Mus_pahari
ENSMMUG00000011562	PABPC5	99	95.251	MGP_SPRETEiJ_G0034533	Pabpc5	99	95.251	Mus_spretus
ENSMMUG00000011562	PABPC5	99	96.588	ENSMPUG00000018465	PABPC5	99	96.588	Mustela_putorius_furo
ENSMMUG00000011562	PABPC5	99	96.063	ENSMLUG00000008244	PABPC5	99	96.063	Myotis_lucifugus
ENSMMUG00000011562	PABPC5	95	96.313	ENSNGAG00000004371	Pabpc5	99	96.313	Nannospalax_galili
ENSMMUG00000011562	PABPC5	100	99.738	ENSNLEG00000035086	PABPC5	100	99.738	Nomascus_leucogenys
ENSMMUG00000011562	PABPC5	98	97.285	ENSOPRG00000000856	PABPC5	100	97.285	Ochotona_princeps
ENSMMUG00000011562	PABPC5	99	97.638	ENSOCUG00000010919	PABPC5	99	97.638	Oryctolagus_cuniculus
ENSMMUG00000011562	PABPC5	99	96.850	ENSOGAG00000006882	PABPC5	99	96.850	Otolemur_garnettii
ENSMMUG00000011562	PABPC5	99	96.850	ENSOARG00000010260	PABPC5	99	96.850	Ovis_aries
ENSMMUG00000011562	PABPC5	100	99.476	ENSPPAG00000007378	PABPC5	100	99.476	Pan_paniscus
ENSMMUG00000011562	PABPC5	99	97.113	ENSPPRG00000010742	PABPC5	99	97.113	Panthera_pardus
ENSMMUG00000011562	PABPC5	99	97.113	ENSPTIG00000001480	PABPC5	99	97.113	Panthera_tigris_altaica
ENSMMUG00000011562	PABPC5	100	99.738	ENSPTRG00000022078	PABPC5	100	99.738	Pan_troglodytes
ENSMMUG00000011562	PABPC5	100	100.000	ENSPANG00000018282	PABPC5	100	100.000	Papio_anubis
ENSMMUG00000011562	PABPC5	99	95.276	ENSPEMG00000000171	Pabpc5	99	95.276	Peromyscus_maniculatus_bairdii
ENSMMUG00000011562	PABPC5	100	99.738	ENSPPYG00000020526	PABPC5	100	99.738	Pongo_abelii
ENSMMUG00000011562	PABPC5	99	97.091	ENSPCAG00000015577	PABPC5	100	97.091	Procavia_capensis
ENSMMUG00000011562	PABPC5	99	97.113	ENSPCOG00000000676	PABPC5	99	97.113	Propithecus_coquereli
ENSMMUG00000011562	PABPC5	99	97.113	ENSPVAG00000006465	PABPC5	99	97.113	Pteropus_vampyrus
ENSMMUG00000011562	PABPC5	99	95.801	ENSRNOG00000003354	Pabpc5	99	95.801	Rattus_norvegicus
ENSMMUG00000011562	PABPC5	100	100.000	ENSRBIG00000011760	PABPC5	100	100.000	Rhinopithecus_bieti
ENSMMUG00000011562	PABPC5	100	100.000	ENSRROG00000036708	PABPC5	100	100.000	Rhinopithecus_roxellana
ENSMMUG00000011562	PABPC5	100	99.476	ENSSBOG00000008658	PABPC5	100	99.476	Saimiri_boliviensis_boliviensis
ENSMMUG00000011562	PABPC5	99	94.488	ENSSARG00000014012	PABPC5	99	94.488	Sorex_araneus
ENSMMUG00000011562	PABPC5	99	97.113	ENSSSCG00000040194	PABPC5	99	97.113	Sus_scrofa
ENSMMUG00000011562	PABPC5	99	98.425	ENSTBEG00000016482	PABPC5	99	98.425	Tupaia_belangeri
ENSMMUG00000011562	PABPC5	99	96.850	ENSUAMG00000013627	PABPC5	99	96.850	Ursus_americanus
ENSMMUG00000011562	PABPC5	99	96.588	ENSUMAG00000023934	PABPC5	99	96.588	Ursus_maritimus
ENSMMUG00000011562	PABPC5	99	97.113	ENSVPAG00000001063	PABPC5	99	97.113	Vicugna_pacos
ENSMMUG00000011562	PABPC5	99	97.113	ENSVVUG00000013172	PABPC5	99	97.113	Vulpes_vulpes