EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMMUG00000014038 (Gene tree)
Gene ID: 714497
Gene Symbol: XRN1
Alias: SEP1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Macaca_mulatta
Status: putative
Strand: Plus strand
Length: 135530 bases
Position: chr2:159398518-159534047
Accession: 714497
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMUP00000018448	XRN_N	PF03159.18	6e-96	1	1
ENSMMUP00000038546	XRN_N	PF03159.18	6.1e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMUT00000019705	XRN1-202	10081	XM_015131995	ENSMMUP00000018448	1694 (aa)	XP_014987481	F7APA3
ENSMMUT00000045513	XRN1-201	10214	XM_001112305	ENSMMUP00000038546	1707 (aa)	XP_001112305	F6WU61

Gene Model

Click here to download ENSMMUG00000014038's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcc03008	Ribosome biogenesis in eukaryotes	KEGG
mcc03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMMUG00000014038's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMUG00000014038	XRN1	100	97.639	ENSG00000114127	XRN1	100	100.000	Homo_sapiens
ENSMMUG00000014038	XRN1	95	72.705	ENSAPOG00000000622	xrn1	93	76.119	Acanthochromis_polyacanthus
ENSMMUG00000014038	XRN1	100	92.046	ENSAMEG00000012538	XRN1	100	92.046	Ailuropoda_melanoleuca
ENSMMUG00000014038	XRN1	95	72.498	ENSACIG00000001057	xrn1	94	72.661	Amphilophus_citrinellus
ENSMMUG00000014038	XRN1	100	61.060	ENSAOCG00000014097	xrn1	95	69.478	Amphiprion_ocellaris
ENSMMUG00000014038	XRN1	100	60.654	ENSAPEG00000006620	xrn1	98	62.902	Amphiprion_percula
ENSMMUG00000014038	XRN1	94	71.281	ENSATEG00000009752	xrn1	97	71.349	Anabas_testudineus
ENSMMUG00000014038	XRN1	99	76.365	ENSAPLG00000004905	XRN1	100	76.365	Anas_platyrhynchos
ENSMMUG00000014038	XRN1	100	72.635	ENSACAG00000004985	XRN1	100	72.635	Anolis_carolinensis
ENSMMUG00000014038	XRN1	100	96.871	ENSANAG00000029013	XRN1	100	96.871	Aotus_nancymaae
ENSMMUG00000014038	XRN1	100	60.604	ENSACLG00000004806	xrn1	96	62.159	Astatotilapia_calliptera
ENSMMUG00000014038	XRN1	99	60.837	ENSAMXG00000019370	xrn1	96	93.269	Astyanax_mexicanus
ENSMMUG00000014038	XRN1	100	92.443	ENSBTAG00000011524	XRN1	100	92.267	Bos_taurus
ENSMMUG00000014038	XRN1	71	39.210	WBGene00012730	xrn-1	80	39.256	Caenorhabditis_elegans
ENSMMUG00000014038	XRN1	100	97.048	ENSCJAG00000001872	XRN1	100	97.048	Callithrix_jacchus
ENSMMUG00000014038	XRN1	100	93.380	ENSCAFG00000007783	XRN1	100	93.380	Canis_familiaris
ENSMMUG00000014038	XRN1	100	92.317	ENSCAFG00020009120	XRN1	99	94.286	Canis_lupus_dingo
ENSMMUG00000014038	XRN1	99	90.457	ENSCHIG00000019192	XRN1	99	90.283	Capra_hircus
ENSMMUG00000014038	XRN1	100	94.395	ENSTSYG00000002705	XRN1	100	94.395	Carlito_syrichta
ENSMMUG00000014038	XRN1	55	76.783	ENSCAPG00000004604	-	99	76.783	Cavia_aperea
ENSMMUG00000014038	XRN1	100	97.521	ENSCCAG00000034800	XRN1	99	99.208	Cebus_capucinus
ENSMMUG00000014038	XRN1	100	99.883	ENSCATG00000041794	XRN1	100	99.883	Cercocebus_atys
ENSMMUG00000014038	XRN1	100	88.229	ENSCLAG00000001451	XRN1	99	96.355	Chinchilla_lanigera
ENSMMUG00000014038	XRN1	100	99.707	ENSCSAG00000011265	XRN1	100	99.707	Chlorocebus_sabaeus
ENSMMUG00000014038	XRN1	58	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSMMUG00000014038	XRN1	71	45.327	ENSCSAVG00000008584	-	98	44.739	Ciona_savignyi
ENSMMUG00000014038	XRN1	100	99.351	ENSCANG00000037495	XRN1	100	99.351	Colobus_angolensis_palliatus
ENSMMUG00000014038	XRN1	100	88.099	ENSCGRG00001019411	Xrn1	99	96.355	Cricetulus_griseus_chok1gshd
ENSMMUG00000014038	XRN1	100	88.099	ENSCGRG00000012464	Xrn1	99	96.355	Cricetulus_griseus_crigri
ENSMMUG00000014038	XRN1	100	56.020	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSMMUG00000014038	XRN1	67	67.544	ENSCVAG00000013089	xrn1	99	71.958	Cyprinodon_variegatus
ENSMMUG00000014038	XRN1	99	63.050	ENSDARG00000091652	xrn1	98	79.958	Danio_rerio
ENSMMUG00000014038	XRN1	100	87.326	ENSDORG00000013833	Xrn1	100	87.269	Dipodomys_ordii
ENSMMUG00000014038	XRN1	75	39.860	FBgn0020261	pcm	76	39.768	Drosophila_melanogaster
ENSMMUG00000014038	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSMMUG00000014038	XRN1	100	93.204	ENSEASG00005002687	XRN1	99	96.513	Equus_asinus_asinus
ENSMMUG00000014038	XRN1	100	93.204	ENSECAG00000008301	XRN1	100	93.204	Equus_caballus
ENSMMUG00000014038	XRN1	92	83.382	ENSEEUG00000011323	XRN1	92	83.382	Erinaceus_europaeus
ENSMMUG00000014038	XRN1	100	61.696	ENSELUG00000000169	xrn1	94	63.571	Esox_lucius
ENSMMUG00000014038	XRN1	100	89.754	ENSFCAG00000027589	XRN1	99	96.264	Felis_catus
ENSMMUG00000014038	XRN1	100	74.902	ENSFALG00000007021	XRN1	100	74.958	Ficedula_albicollis
ENSMMUG00000014038	XRN1	100	89.152	ENSFDAG00000020494	XRN1	99	95.880	Fukomys_damarensis
ENSMMUG00000014038	XRN1	84	68.452	ENSGMOG00000006396	xrn1	80	68.452	Gadus_morhua
ENSMMUG00000014038	XRN1	100	75.183	ENSGALG00000002706	XRN1	100	75.183	Gallus_gallus
ENSMMUG00000014038	XRN1	100	59.795	ENSGACG00000014328	xrn1	96	61.452	Gasterosteus_aculeatus
ENSMMUG00000014038	XRN1	95	78.360	ENSGAGG00000017535	XRN1	99	78.360	Gopherus_agassizii
ENSMMUG00000014038	XRN1	100	97.832	ENSGGOG00000008047	XRN1	100	97.832	Gorilla_gorilla
ENSMMUG00000014038	XRN1	100	60.673	ENSHBUG00000005908	xrn1	98	72.690	Haplochromis_burtoni
ENSMMUG00000014038	XRN1	100	90.369	ENSHGLG00000014476	XRN1	99	96.830	Heterocephalus_glaber_female
ENSMMUG00000014038	XRN1	100	90.369	ENSHGLG00100015130	XRN1	99	96.830	Heterocephalus_glaber_male
ENSMMUG00000014038	XRN1	97	70.024	ENSHCOG00000014062	xrn1	96	70.174	Hippocampus_comes
ENSMMUG00000014038	XRN1	99	62.723	ENSIPUG00000015229	xrn1	96	64.766	Ictalurus_punctatus
ENSMMUG00000014038	XRN1	100	91.917	ENSSTOG00000013552	XRN1	99	97.781	Ictidomys_tridecemlineatus
ENSMMUG00000014038	XRN1	98	87.119	ENSJJAG00000010863	Xrn1	99	94.194	Jaculus_jaculus
ENSMMUG00000014038	XRN1	94	61.355	ENSKMAG00000021356	xrn1	94	75.949	Kryptolebias_marmoratus
ENSMMUG00000014038	XRN1	100	59.762	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSMMUG00000014038	XRN1	100	69.989	ENSLACG00000009020	XRN1	97	71.091	Latimeria_chalumnae
ENSMMUG00000014038	XRN1	100	66.034	ENSLOCG00000007944	xrn1	98	66.237	Lepisosteus_oculatus
ENSMMUG00000014038	XRN1	63	96.258	ENSLAFG00000015426	XRN1	100	96.258	Loxodonta_africana
ENSMMUG00000014038	XRN1	100	99.941	ENSMFAG00000032599	XRN1	100	99.941	Macaca_fascicularis
ENSMMUG00000014038	XRN1	100	99.707	ENSMNEG00000034217	XRN1	100	99.707	Macaca_nemestrina
ENSMMUG00000014038	XRN1	94	71.034	ENSMAMG00000013219	xrn1	94	77.113	Mastacembelus_armatus
ENSMMUG00000014038	XRN1	100	60.308	ENSMZEG00005015099	xrn1	96	62.040	Maylandia_zebra
ENSMMUG00000014038	XRN1	99	75.116	ENSMGAG00000006333	XRN1	100	75.116	Meleagris_gallopavo
ENSMMUG00000014038	XRN1	100	94.523	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSMMUG00000014038	XRN1	58	95.246	ENSMOCG00000008665	Xrn1	99	95.246	Microtus_ochrogaster
ENSMMUG00000014038	XRN1	100	82.555	ENSMODG00000021236	XRN1	100	82.264	Monodelphis_domestica
ENSMMUG00000014038	XRN1	100	58.007	ENSMALG00000004098	xrn1	100	57.616	Monopterus_albus
ENSMMUG00000014038	XRN1	96	95.419	MGP_CAROLIEiJ_G0032535	Xrn1	100	100.000	Mus_caroli
ENSMMUG00000014038	XRN1	100	87.002	ENSMUSG00000032410	Xrn1	100	100.000	Mus_musculus
ENSMMUG00000014038	XRN1	100	86.713	MGP_PahariEiJ_G0015404	Xrn1	100	100.000	Mus_pahari
ENSMMUG00000014038	XRN1	100	86.944	MGP_SPRETEiJ_G0033678	Xrn1	100	100.000	Mus_spretus
ENSMMUG00000014038	XRN1	100	93.732	ENSMPUG00000012040	XRN1	100	93.732	Mustela_putorius_furo
ENSMMUG00000014038	XRN1	100	89.665	ENSMLUG00000016885	XRN1	100	89.550	Myotis_lucifugus
ENSMMUG00000014038	XRN1	58	91.759	ENSNGAG00000023964	Xrn1	99	92.051	Nannospalax_galili
ENSMMUG00000014038	XRN1	100	98.229	ENSNLEG00000004726	XRN1	100	98.229	Nomascus_leucogenys
ENSMMUG00000014038	XRN1	77	98.969	ENSMEUG00000014473	-	80	99.029	Notamacropus_eugenii
ENSMMUG00000014038	XRN1	79	84.640	ENSOPRG00000007337	-	78	84.640	Ochotona_princeps
ENSMMUG00000014038	XRN1	100	61.425	ENSONIG00000016673	xrn1	99	64.710	Oreochromis_niloticus
ENSMMUG00000014038	XRN1	92	78.016	ENSOANG00000006735	XRN1	100	77.890	Ornithorhynchus_anatinus
ENSMMUG00000014038	XRN1	100	90.487	ENSOCUG00000001861	XRN1	100	90.315	Oryctolagus_cuniculus
ENSMMUG00000014038	XRN1	100	60.882	ENSORLG00000013005	xrn1	100	60.514	Oryzias_latipes
ENSMMUG00000014038	XRN1	100	61.102	ENSORLG00020005559	xrn1	100	61.357	Oryzias_latipes_hni
ENSMMUG00000014038	XRN1	100	61.136	ENSORLG00015022523	xrn1	96	62.300	Oryzias_latipes_hsok
ENSMMUG00000014038	XRN1	93	72.742	ENSOMEG00000015397	xrn1	99	72.742	Oryzias_melastigma
ENSMMUG00000014038	XRN1	100	91.335	ENSOGAG00000000170	XRN1	100	91.335	Otolemur_garnettii
ENSMMUG00000014038	XRN1	99	92.962	ENSOARG00000006343	XRN1	99	92.786	Ovis_aries
ENSMMUG00000014038	XRN1	100	97.715	ENSPPAG00000010180	XRN1	100	97.715	Pan_paniscus
ENSMMUG00000014038	XRN1	100	93.864	ENSPPRG00000007125	XRN1	100	93.864	Panthera_pardus
ENSMMUG00000014038	XRN1	100	93.923	ENSPTIG00000021081	XRN1	100	93.923	Panthera_tigris_altaica
ENSMMUG00000014038	XRN1	100	97.832	ENSPTRG00000015482	XRN1	100	97.832	Pan_troglodytes
ENSMMUG00000014038	XRN1	100	99.883	ENSPANG00000010638	XRN1	100	99.883	Papio_anubis
ENSMMUG00000014038	XRN1	100	77.042	ENSPSIG00000018050	XRN1	100	77.156	Pelodiscus_sinensis
ENSMMUG00000014038	XRN1	57	77.394	ENSPMGG00000002648	xrn1	98	78.493	Periophthalmus_magnuspinnatus
ENSMMUG00000014038	XRN1	58	96.038	ENSPEMG00000020610	Xrn1	99	96.038	Peromyscus_maniculatus_bairdii
ENSMMUG00000014038	XRN1	65	50.886	ENSPMAG00000002975	xrn1	91	78.448	Petromyzon_marinus
ENSMMUG00000014038	XRN1	100	81.818	ENSPCIG00000028735	XRN1	99	90.106	Phascolarctos_cinereus
ENSMMUG00000014038	XRN1	91	64.702	ENSPFOG00000013932	xrn1	99	65.083	Poecilia_formosa
ENSMMUG00000014038	XRN1	91	63.458	ENSPLAG00000021653	xrn1	99	64.295	Poecilia_latipinna
ENSMMUG00000014038	XRN1	89	64.295	ENSPMEG00000003076	xrn1	95	64.809	Poecilia_mexicana
ENSMMUG00000014038	XRN1	100	60.763	ENSPREG00000021147	xrn1	100	59.931	Poecilia_reticulata
ENSMMUG00000014038	XRN1	100	97.950	ENSPPYG00000014172	XRN1	100	97.950	Pongo_abelii
ENSMMUG00000014038	XRN1	90	81.865	ENSPCAG00000005638	XRN1	100	81.865	Procavia_capensis
ENSMMUG00000014038	XRN1	100	95.044	ENSPCOG00000013089	XRN1	99	97.440	Propithecus_coquereli
ENSMMUG00000014038	XRN1	96	92.548	ENSPVAG00000016265	XRN1	96	92.548	Pteropus_vampyrus
ENSMMUG00000014038	XRN1	96	71.282	ENSPNYG00000010570	xrn1	94	71.338	Pundamilia_nyererei
ENSMMUG00000014038	XRN1	99	60.657	ENSPNAG00000023531	xrn1	96	62.048	Pygocentrus_nattereri
ENSMMUG00000014038	XRN1	100	87.695	ENSRNOG00000042951	Xrn1	100	87.579	Rattus_norvegicus
ENSMMUG00000014038	XRN1	100	98.653	ENSRBIG00000041227	XRN1	100	98.653	Rhinopithecus_bieti
ENSMMUG00000014038	XRN1	67	54.496	YGL173C	XRN1	81	34.434	Saccharomyces_cerevisiae
ENSMMUG00000014038	XRN1	100	96.930	ENSSBOG00000029561	XRN1	100	96.930	Saimiri_boliviensis_boliviensis
ENSMMUG00000014038	XRN1	99	81.963	ENSSHAG00000016207	XRN1	100	81.716	Sarcophilus_harrisii
ENSMMUG00000014038	XRN1	100	61.454	ENSSFOG00015024211	xrn1	97	63.259	Scleropages_formosus
ENSMMUG00000014038	XRN1	94	72.617	ENSSMAG00000016534	xrn1	95	72.617	Scophthalmus_maximus
ENSMMUG00000014038	XRN1	93	72.254	ENSSDUG00000010306	xrn1	91	72.101	Seriola_dumerili
ENSMMUG00000014038	XRN1	95	71.815	ENSSLDG00000021543	xrn1	97	71.667	Seriola_lalandi_dorsalis
ENSMMUG00000014038	XRN1	68	85.537	ENSSARG00000007741	-	83	85.537	Sorex_araneus
ENSMMUG00000014038	XRN1	100	77.191	ENSTGUG00000008498	XRN1	100	77.249	Taeniopygia_guttata
ENSMMUG00000014038	XRN1	100	59.009	ENSTRUG00000004895	xrn1	96	75.365	Takifugu_rubripes
ENSMMUG00000014038	XRN1	96	68.526	ENSTNIG00000017615	xrn1	96	60.580	Tetraodon_nigroviridis
ENSMMUG00000014038	XRN1	84	97.844	ENSTBEG00000003256	XRN1	89	87.719	Tupaia_belangeri
ENSMMUG00000014038	XRN1	100	89.279	ENSTTRG00000012914	XRN1	100	89.045	Tursiops_truncatus
ENSMMUG00000014038	XRN1	100	92.857	ENSUAMG00000001608	XRN1	99	94.286	Ursus_americanus
ENSMMUG00000014038	XRN1	100	94.731	ENSUMAG00000013625	XRN1	100	94.731	Ursus_maritimus
ENSMMUG00000014038	XRN1	100	90.861	ENSVPAG00000004690	XRN1	100	90.861	Vicugna_pacos
ENSMMUG00000014038	XRN1	100	94.318	ENSVVUG00000024461	XRN1	99	97.306	Vulpes_vulpes
ENSMMUG00000014038	XRN1	100	69.298	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSMMUG00000014038	XRN1	100	61.242	ENSXCOG00000007917	xrn1	95	62.902	Xiphophorus_couchianus
ENSMMUG00000014038	XRN1	92	71.883	ENSXMAG00000018320	xrn1	98	71.964	Xiphophorus_maculatus