EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSMMUG00000018038 (Gene tree)
Gene ID
694036
Gene Symbol
CPSF3
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Macaca_mulatta
Status
putative
Strand
Plus strand
Length
51502 bases
Position
chr13:9411306-9462807
Accession
694036
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMMUP00000048444CPSF73-100_CPF11718.81.3e-5411
ENSMMUP00000023711CPSF73-100_CPF11718.81.3e-5411
ENSMMUP00000059722CPSF73-100_CPF11718.81.8e-3911
ENSMMUP00000060253Beta-CaspPF10996.85.5e-3411
ENSMMUP00000048444Beta-CaspPF10996.87e-3411
ENSMMUP00000023711Beta-CaspPF10996.87.1e-3411
ENSMMUP00000059722Beta-CaspPF10996.87.5e-3411
ENSMMUP00000060253Lactamase_BPF00753.271.1e-1811
ENSMMUP00000059722Lactamase_BPF00753.271.7e-1811
ENSMMUP00000048444Lactamase_BPF00753.273.9e-1511
ENSMMUP00000023711Lactamase_BPF00753.278.7e-1511
ENSMMUP00000060253RMMBLPF07521.121.7e-2111
ENSMMUP00000048444RMMBLPF07521.121.9e-2111
ENSMMUP00000023711RMMBLPF07521.121.9e-2111
ENSMMUP00000059722RMMBLPF07521.122.4e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMMUT00000070261CPSF3-2022160-ENSMMUP00000059722653 (aa)-A0A1D5RHC8
ENSMMUT00000057243CPSF3-2012363XM_015111667ENSMMUP00000048444647 (aa)XP_014967153A0A1D5QK71
ENSMMUT00000025345CPSF3-2041947-ENSMMUP00000023711648 (aa)-F7EVB1
ENSMMUT00000071929CPSF3-2031572-ENSMMUP00000060253523 (aa)-A0A1D5RIV9
Gene Model
Click here to download ENSMMUG00000018038's gene model file
Pathways
Pathway IDPathway NameSource
mcc03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMMUG00000018038's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMMUG00000018038CPSF38440.089ENSMMUG00000013866INTS117941.410
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMMUG00000018038CPSF310099.691ENSG00000119203CPSF3100100.000Homo_sapiens
ENSMMUG00000018038CPSF39295.208ENSAPOG00000012241CPSF39096.982Acanthochromis_polyacanthus
ENSMMUG00000018038CPSF39293.750ENSAPOG00000022087cpsf39982.119Acanthochromis_polyacanthus
ENSMMUG00000018038CPSF310099.382ENSAMEG00000008493CPSF39599.382Ailuropoda_melanoleuca
ENSMMUG00000018038CPSF39782.643ENSACIG00000009846cpsf39982.643Amphilophus_citrinellus
ENSMMUG00000018038CPSF39786.349ENSACIG00000023663CPSF39986.349Amphilophus_citrinellus
ENSMMUG00000018038CPSF39293.750ENSAOCG00000022056cpsf39491.156Amphiprion_ocellaris
ENSMMUG00000018038CPSF39295.208ENSAOCG00000010077CPSF39984.603Amphiprion_ocellaris
ENSMMUG00000018038CPSF39295.208ENSAPEG00000021167CPSF39984.921Amphiprion_percula
ENSMMUG00000018038CPSF39293.750ENSAPEG00000019526cpsf39981.890Amphiprion_percula
ENSMMUG00000018038CPSF39295.208ENSATEG00000014525CPSF39087.809Anabas_testudineus
ENSMMUG00000018038CPSF39293.763ENSATEG00000003959cpsf39982.962Anabas_testudineus
ENSMMUG00000018038CPSF310095.518ENSAPLG00000006941CPSF39595.518Anas_platyrhynchos
ENSMMUG00000018038CPSF39892.913ENSACAG00000001759CPSF39992.913Anolis_carolinensis
ENSMMUG00000018038CPSF310093.354ENSANAG00000031254CPSF39693.354Aotus_nancymaae
ENSMMUG00000018038CPSF39985.116ENSACLG00000014484cpsf39983.121Astatotilapia_calliptera
ENSMMUG00000018038CPSF39786.190ENSACLG00000018846CPSF39986.190Astatotilapia_calliptera
ENSMMUG00000018038CPSF39295.208ENSAMXG00000004786cpsf39985.215Astyanax_mexicanus
ENSMMUG00000018038CPSF310099.536ENSBTAG00000019735CPSF39599.536Bos_taurus
ENSMMUG00000018038CPSF39166.667WBGene00013460cpsf-38561.564Caenorhabditis_elegans
ENSMMUG00000018038CPSF310099.691ENSCJAG00000006276CPSF39599.691Callithrix_jacchus
ENSMMUG00000018038CPSF310099.382ENSCAFG00000003375CPSF39099.382Canis_familiaris
ENSMMUG00000018038CPSF391100.000ENSCAFG00020026799CPSF396100.000Canis_lupus_dingo
ENSMMUG00000018038CPSF310099.536ENSCHIG00000013973CPSF39599.536Capra_hircus
ENSMMUG00000018038CPSF310099.691ENSTSYG00000002967CPSF39599.691Carlito_syrichta
ENSMMUG00000018038CPSF310097.682ENSCAPG00000013851CPSF39797.682Cavia_aperea
ENSMMUG00000018038CPSF310097.682ENSCPOG00000011299CPSF39597.682Cavia_porcellus
ENSMMUG00000018038CPSF310099.845ENSCCAG00000036730CPSF39699.845Cebus_capucinus
ENSMMUG00000018038CPSF310097.222ENSCATG00000014770CPSF399100.000Cercocebus_atys
ENSMMUG00000018038CPSF310097.218ENSCLAG00000002727CPSF39597.218Chinchilla_lanigera
ENSMMUG00000018038CPSF310091.808ENSCSAG00000007125CPSF39491.808Chlorocebus_sabaeus
ENSMMUG00000018038CPSF377100.000ENSCHOG00000000180CPSF38572.281Choloepus_hoffmanni
ENSMMUG00000018038CPSF39995.511ENSCPBG00000014074CPSF39395.511Chrysemys_picta_bellii
ENSMMUG00000018038CPSF39277.244ENSCING00000007214-9368.203Ciona_intestinalis
ENSMMUG00000018038CPSF310085.781ENSCANG00000034435CPSF39485.781Colobus_angolensis_palliatus
ENSMMUG00000018038CPSF310098.764ENSCGRG00001013134Cpsf39598.764Cricetulus_griseus_chok1gshd
ENSMMUG00000018038CPSF310098.764ENSCGRG00000018319Cpsf39598.764Cricetulus_griseus_crigri
ENSMMUG00000018038CPSF39294.167ENSCSEG00000002021CPSF39986.399Cynoglossus_semilaevis
ENSMMUG00000018038CPSF39295.000ENSCVAG00000015067CPSF39387.616Cyprinodon_variegatus
ENSMMUG00000018038CPSF39295.417ENSDARG00000027649cpsf39388.390Danio_rerio
ENSMMUG00000018038CPSF310097.685ENSDNOG00000008940CPSF39097.685Dasypus_novemcinctus
ENSMMUG00000018038CPSF39599.023ENSDORG00000014263Cpsf39499.023Dipodomys_ordii
ENSMMUG00000018038CPSF39277.917FBgn0261065Cpsf739366.512Drosophila_melanogaster
ENSMMUG00000018038CPSF39588.091ENSETEG00000003893CPSF39488.091Echinops_telfairi
ENSMMUG00000018038CPSF39289.562ENSEBUG00000009018cpsf39478.346Eptatretus_burgeri
ENSMMUG00000018038CPSF310099.382ENSEASG00005003970CPSF39599.382Equus_asinus_asinus
ENSMMUG00000018038CPSF310099.382ENSECAG00000019911CPSF397100.000Equus_caballus
ENSMMUG00000018038CPSF310082.998ENSEEUG00000015422CPSF39582.998Erinaceus_europaeus
ENSMMUG00000018038CPSF39987.597ENSELUG00000013775cpsf39985.197Esox_lucius
ENSMMUG00000018038CPSF310099.536ENSFCAG00000007852CPSF310099.536Felis_catus
ENSMMUG00000018038CPSF310095.209ENSFALG00000006572CPSF310095.209Ficedula_albicollis
ENSMMUG00000018038CPSF39997.054ENSFDAG00000006317CPSF39497.054Fukomys_damarensis
ENSMMUG00000018038CPSF36368.537ENSFHEG00000012186CPSF39968.537Fundulus_heteroclitus
ENSMMUG00000018038CPSF39292.917ENSFHEG00000014774cpsf39384.341Fundulus_heteroclitus
ENSMMUG00000018038CPSF39293.347ENSGMOG00000003157cpsf39386.068Gadus_morhua
ENSMMUG00000018038CPSF310094.745ENSGALG00000016424CPSF39994.646Gallus_gallus
ENSMMUG00000018038CPSF39782.671ENSGAFG00000019449cpsf39982.671Gambusia_affinis
ENSMMUG00000018038CPSF39295.010ENSGAFG00000008016CPSF39387.442Gambusia_affinis
ENSMMUG00000018038CPSF37293.362ENSGAGG00000025583CPSF39393.362Gopherus_agassizii
ENSMMUG00000018038CPSF39899.843ENSGGOG00000001757CPSF310099.843Gorilla_gorilla
ENSMMUG00000018038CPSF36381.235ENSHBUG00000014332CPSF39981.235Haplochromis_burtoni
ENSMMUG00000018038CPSF39293.568ENSHBUG00000001188cpsf39983.121Haplochromis_burtoni
ENSMMUG00000018038CPSF310096.600ENSHGLG00000000666CPSF39496.600Heterocephalus_glaber_female
ENSMMUG00000018038CPSF310096.600ENSHGLG00100007765CPSF39496.600Heterocephalus_glaber_male
ENSMMUG00000018038CPSF39294.792ENSHCOG00000015957CPSF39285.759Hippocampus_comes
ENSMMUG00000018038CPSF39293.568ENSHCOG00000007251cpsf38790.909Hippocampus_comes
ENSMMUG00000018038CPSF39293.750ENSIPUG00000023488cpsf39982.992Ictalurus_punctatus
ENSMMUG00000018038CPSF310098.764ENSSTOG00000004476CPSF39598.764Ictidomys_tridecemlineatus
ENSMMUG00000018038CPSF310097.682ENSJJAG00000023415Cpsf39597.682Jaculus_jaculus
ENSMMUG00000018038CPSF39293.555ENSKMAG00000002806cpsf39384.031Kryptolebias_marmoratus
ENSMMUG00000018038CPSF39295.000ENSKMAG00000007317CPSF39386.997Kryptolebias_marmoratus
ENSMMUG00000018038CPSF39295.208ENSLBEG00000013492CPSF39092.462Labrus_bergylta
ENSMMUG00000018038CPSF39288.981ENSLBEG00000020569cpsf38786.167Labrus_bergylta
ENSMMUG00000018038CPSF35879.357ENSLBEG00000015018-9979.357Labrus_bergylta
ENSMMUG00000018038CPSF39983.256ENSLACG00000008308CPSF39383.256Latimeria_chalumnae
ENSMMUG00000018038CPSF39988.717ENSLOCG00000016823cpsf39388.717Lepisosteus_oculatus
ENSMMUG00000018038CPSF310098.918ENSLAFG00000009467CPSF39598.918Loxodonta_africana
ENSMMUG00000018038CPSF3100100.000ENSMFAG00000001339CPSF3100100.000Macaca_fascicularis
ENSMMUG00000018038CPSF310088.717ENSMNEG00000039447CPSF39488.717Macaca_nemestrina
ENSMMUG00000018038CPSF310099.845ENSMLEG00000026825CPSF39997.217Mandrillus_leucophaeus
ENSMMUG00000018038CPSF39785.127ENSMAMG00000008835CPSF39985.127Mastacembelus_armatus
ENSMMUG00000018038CPSF39294.167ENSMAMG00000003076cpsf39287.796Mastacembelus_armatus
ENSMMUG00000018038CPSF39295.417ENSMZEG00005006258CPSF39986.190Maylandia_zebra
ENSMMUG00000018038CPSF39293.568ENSMZEG00005014358cpsf39983.121Maylandia_zebra
ENSMMUG00000018038CPSF310094.900ENSMGAG00000013995CPSF39794.900Meleagris_gallopavo
ENSMMUG00000018038CPSF35897.074ENSMAUG00000000166Cpsf310097.074Mesocricetus_auratus
ENSMMUG00000018038CPSF310093.509ENSMICG00000002363CPSF310093.281Microcebus_murinus
ENSMMUG00000018038CPSF310093.972ENSMOCG00000020067Cpsf39199.496Microtus_ochrogaster
ENSMMUG00000018038CPSF37777.857ENSMMOG00000011923CPSF38477.857Mola_mola
ENSMMUG00000018038CPSF39982.171ENSMMOG00000018212CPSF39882.171Mola_mola
ENSMMUG00000018038CPSF310095.719ENSMODG00000014703CPSF39595.719Monodelphis_domestica
ENSMMUG00000018038CPSF39293.568ENSMALG00000016416cpsf39983.280Monopterus_albus
ENSMMUG00000018038CPSF39883.281ENSMALG00000011474CPSF39983.281Monopterus_albus
ENSMMUG00000018038CPSF310098.454MGP_CAROLIEiJ_G0017640Cpsf39598.454Mus_caroli
ENSMMUG00000018038CPSF310098.454ENSMUSG00000054309Cpsf396100.000Mus_musculus
ENSMMUG00000018038CPSF310098.300MGP_PahariEiJ_G0029397Cpsf39598.300Mus_pahari
ENSMMUG00000018038CPSF310098.454MGP_SPRETEiJ_G0018481Cpsf39598.454Mus_spretus
ENSMMUG00000018038CPSF310098.609ENSMPUG00000013213CPSF39598.609Mustela_putorius_furo
ENSMMUG00000018038CPSF310098.302ENSMLUG00000010636CPSF39598.302Myotis_lucifugus
ENSMMUG00000018038CPSF310098.609ENSNGAG00000019836Cpsf39598.609Nannospalax_galili
ENSMMUG00000018038CPSF39293.568ENSNBRG00000004770cpsf39982.643Neolamprologus_brichardi
ENSMMUG00000018038CPSF39786.190ENSNBRG00000010525CPSF39986.190Neolamprologus_brichardi
ENSMMUG00000018038CPSF3100100.000ENSNLEG00000013359CPSF3100100.000Nomascus_leucogenys
ENSMMUG00000018038CPSF39966.718ENSMEUG00000013117-9466.718Notamacropus_eugenii
ENSMMUG00000018038CPSF310089.181ENSOPRG00000008902CPSF39589.181Ochotona_princeps
ENSMMUG00000018038CPSF310096.754ENSODEG00000003129CPSF39596.754Octodon_degus
ENSMMUG00000018038CPSF39293.568ENSONIG00000018812cpsf39385.271Oreochromis_niloticus
ENSMMUG00000018038CPSF38796.277ENSOANG00000008577CPSF310096.277Ornithorhynchus_anatinus
ENSMMUG00000018038CPSF310098.918ENSOCUG00000003728CPSF39598.918Oryctolagus_cuniculus
ENSMMUG00000018038CPSF39293.154ENSORLG00000018854cpsf38789.057Oryzias_latipes
ENSMMUG00000018038CPSF39293.154ENSORLG00020013331cpsf39980.127Oryzias_latipes_hni
ENSMMUG00000018038CPSF39293.154ENSORLG00015011017cpsf39980.286Oryzias_latipes_hsok
ENSMMUG00000018038CPSF39293.154ENSOMEG00000010647cpsf38983.256Oryzias_melastigma
ENSMMUG00000018038CPSF310089.026ENSOGAG00000001680CPSF39589.026Otolemur_garnettii
ENSMMUG00000018038CPSF310099.536ENSOARG00000015073CPSF39599.536Ovis_aries
ENSMMUG00000018038CPSF310099.845ENSPPAG00000042457CPSF39997.638Pan_paniscus
ENSMMUG00000018038CPSF310099.227ENSPPRG00000016790CPSF310099.227Panthera_pardus
ENSMMUG00000018038CPSF310099.227ENSPTIG00000003920CPSF310099.213Panthera_tigris_altaica
ENSMMUG00000018038CPSF310099.845ENSPTRG00000011638CPSF39997.835Pan_troglodytes
ENSMMUG00000018038CPSF310099.845ENSPANG00000016798CPSF399100.000Papio_anubis
ENSMMUG00000018038CPSF39989.147ENSPKIG00000023646cpsf39989.147Paramormyrops_kingsleyae
ENSMMUG00000018038CPSF310094.436ENSPSIG00000016144CPSF39594.436Pelodiscus_sinensis
ENSMMUG00000018038CPSF38291.142ENSPMGG00000006141-9985.340Periophthalmus_magnuspinnatus
ENSMMUG00000018038CPSF36379.012ENSPMGG00000015311CPSF39979.012Periophthalmus_magnuspinnatus
ENSMMUG00000018038CPSF310098.145ENSPEMG00000017668Cpsf39598.145Peromyscus_maniculatus_bairdii
ENSMMUG00000018038CPSF39290.103ENSPMAG00000004841cpsf39990.317Petromyzon_marinus
ENSMMUG00000018038CPSF310097.372ENSPCIG00000009823CPSF39597.468Phascolarctos_cinereus
ENSMMUG00000018038CPSF39293.154ENSPFOG00000015922cpsf39384.211Poecilia_formosa
ENSMMUG00000018038CPSF39295.010ENSPFOG00000010418-9386.977Poecilia_formosa
ENSMMUG00000018038CPSF36280.446ENSPLAG00000021300-9980.446Poecilia_latipinna
ENSMMUG00000018038CPSF39293.154ENSPLAG00000000882cpsf39384.211Poecilia_latipinna
ENSMMUG00000018038CPSF39293.154ENSPMEG00000018309cpsf39384.365Poecilia_mexicana
ENSMMUG00000018038CPSF39881.918ENSPREG00000014875cpsf39981.918Poecilia_reticulata
ENSMMUG00000018038CPSF39295.208ENSPREG00000004482CPSF38195.301Poecilia_reticulata
ENSMMUG00000018038CPSF310095.363ENSPPYG00000012666CPSF39495.363Pongo_abelii
ENSMMUG00000018038CPSF38972.043ENSPCAG00000015042CPSF39464.927Procavia_capensis
ENSMMUG00000018038CPSF38791.020ENSPCOG00000023016CPSF39191.020Propithecus_coquereli
ENSMMUG00000018038CPSF39999.380ENSPVAG00000005324CPSF39499.380Pteropus_vampyrus
ENSMMUG00000018038CPSF38491.529ENSPNYG00000021047CPSF39191.529Pundamilia_nyererei
ENSMMUG00000018038CPSF39293.568ENSPNYG00000004405cpsf39983.121Pundamilia_nyererei
ENSMMUG00000018038CPSF39295.208ENSPNAG00000023060cpsf39985.215Pygocentrus_nattereri
ENSMMUG00000018038CPSF39998.450ENSRNOG00000052418Cpsf39498.450Rattus_norvegicus
ENSMMUG00000018038CPSF310095.209ENSRBIG00000041615CPSF39995.356Rhinopithecus_bieti
ENSMMUG00000018038CPSF310099.845ENSRROG00000033792CPSF39599.845Rhinopithecus_roxellana
ENSMMUG00000018038CPSF38653.205YLR277CYSH19340.331Saccharomyces_cerevisiae
ENSMMUG00000018038CPSF310095.392ENSSBOG00000027263CPSF39495.392Saimiri_boliviensis_boliviensis
ENSMMUG00000018038CPSF310097.527ENSSHAG00000007024CPSF39597.527Sarcophilus_harrisii
ENSMMUG00000018038CPSF39989.302ENSSFOG00015002108cpsf39989.100Scleropages_formosus
ENSMMUG00000018038CPSF39294.802ENSSMAG00000020534CPSF38992.580Scophthalmus_maximus
ENSMMUG00000018038CPSF39295.208ENSSDUG00000018498CPSF39985.873Seriola_dumerili
ENSMMUG00000018038CPSF39293.568ENSSDUG00000002828cpsf39185.116Seriola_dumerili
ENSMMUG00000018038CPSF39293.568ENSSLDG00000008469cpsf39190.847Seriola_lalandi_dorsalis
ENSMMUG00000018038CPSF39295.208ENSSLDG00000005234CPSF39985.873Seriola_lalandi_dorsalis
ENSMMUG00000018038CPSF310080.216ENSSARG00000005186CPSF39580.216Sorex_araneus
ENSMMUG00000018038CPSF310092.012ENSSPUG00000015525CPSF39492.012Sphenodon_punctatus
ENSMMUG00000018038CPSF39295.000ENSSPAG00000002906CPSF39985.556Stegastes_partitus
ENSMMUG00000018038CPSF39293.958ENSSPAG00000018579cpsf39384.651Stegastes_partitus
ENSMMUG00000018038CPSF39999.226ENSSSCG00000020799CPSF39997.923Sus_scrofa
ENSMMUG00000018038CPSF310095.054ENSTGUG00000013016CPSF39595.054Taeniopygia_guttata
ENSMMUG00000018038CPSF39294.179ENSTRUG00000007030cpsf39284.186Takifugu_rubripes
ENSMMUG00000018038CPSF36272.973ENSTRUG00000013905CPSF39972.973Takifugu_rubripes
ENSMMUG00000018038CPSF38592.988ENSTBEG00000002707CPSF37992.988Tupaia_belangeri
ENSMMUG00000018038CPSF38798.387ENSTTRG00000000861CPSF38298.387Tursiops_truncatus
ENSMMUG00000018038CPSF39996.124ENSUAMG00000007535CPSF39396.124Ursus_americanus
ENSMMUG00000018038CPSF310099.382ENSUMAG00000003676CPSF310099.382Ursus_maritimus
ENSMMUG00000018038CPSF39595.603ENSVPAG00000008041CPSF39795.603Vicugna_pacos
ENSMMUG00000018038CPSF310099.382ENSVVUG00000002194CPSF39599.382Vulpes_vulpes
ENSMMUG00000018038CPSF39989.457ENSXETG00000008263cpsf39389.457Xenopus_tropicalis
ENSMMUG00000018038CPSF35778.976ENSXCOG00000000957-8778.976Xiphophorus_couchianus
ENSMMUG00000018038CPSF39293.361ENSXCOG00000019695cpsf39384.520Xiphophorus_couchianus
ENSMMUG00000018038CPSF39293.361ENSXMAG00000009784cpsf39984.211Xiphophorus_maculatus
ENSMMUG00000018038CPSF39295.208ENSXMAG00000027291CPSF39387.287Xiphophorus_maculatus

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