EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMMUG00000020214 (Gene tree)
Gene ID: 677703
Gene Symbol: SMN1
Alias: -
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Macaca_mulatta
Status: putative
Strand: Minus strand
Length: 34670 bases
Position: chr6:67893960-67928629
Accession: 677703
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMUP00000026612	SMN	PF06003.12	1.9e-105	1	1
ENSMMUP00000060628	SMN	PF06003.12	1.8e-101	1	1
ENSMMUP00000050754	SMN	PF06003.12	1.9e-101	1	1
ENSMMUP00000026613	SMN	PF06003.12	1.8e-92	1	2
ENSMMUP00000026613	SMN	PF06003.12	1.8e-92	2	2
ENSMMUP00000050154	SMN	PF06003.12	5.1e-57	1	2
ENSMMUP00000050154	SMN	PF06003.12	5.1e-57	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMUT00000066139	-	885	-	ENSMMUP00000050754	294 (aa)	-	A0A1D5QRS6
ENSMMUT00000068888	-	684	-	ENSMMUP00000050154	227 (aa)	-	A0A1D5QQ27
ENSMMUT00000028438	-	885	-	ENSMMUP00000026612	294 (aa)	-	F6V985
ENSMMUT00000028439	-	789	-	ENSMMUP00000026613	262 (aa)	-	F6V977
ENSMMUT00000072147	-	849	-	ENSMMUP00000060628	282 (aa)	-	A0A1D5RJY4

Gene Model

Click here to download ENSMMUG00000020214's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcc03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMMUG00000020214's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMMUG00000020214	SMN1	100	93.407	ENSMMUG00000030594	-	100	93.197

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMUG00000020214	SMN1	100	97.802	ENSG00000172062	SMN1	100	97.802	Homo_sapiens
ENSMMUG00000020214	SMN1	100	97.802	ENSG00000205571	SMN2	98	100.000	Homo_sapiens
ENSMMUG00000020214	SMN1	92	52.809	ENSAPOG00000011324	smn1	94	53.237	Acanthochromis_polyacanthus
ENSMMUG00000020214	SMN1	94	90.000	ENSAMEG00000003316	-	93	88.968	Ailuropoda_melanoleuca
ENSMMUG00000020214	SMN1	91	52.060	ENSACIG00000019772	-	97	51.154	Amphilophus_citrinellus
ENSMMUG00000020214	SMN1	92	52.809	ENSAOCG00000024444	smn1	94	53.237	Amphiprion_ocellaris
ENSMMUG00000020214	SMN1	92	53.184	ENSAPEG00000016504	smn1	94	53.597	Amphiprion_percula
ENSMMUG00000020214	SMN1	92	54.613	ENSATEG00000002182	smn1	79	55.303	Anabas_testudineus
ENSMMUG00000020214	SMN1	68	55.959	ENSAPLG00000010912	-	97	54.500	Anas_platyrhynchos
ENSMMUG00000020214	SMN1	81	81.633	ENSACAG00000010017	-	95	57.651	Anolis_carolinensis
ENSMMUG00000020214	SMN1	100	91.554	ENSANAG00000032133	-	100	91.554	Aotus_nancymaae
ENSMMUG00000020214	SMN1	92	54.815	ENSACLG00000007308	smn1	88	55.985	Astatotilapia_calliptera
ENSMMUG00000020214	SMN1	54	57.746	ENSAMXG00000013884	smn1	97	48.375	Astyanax_mexicanus
ENSMMUG00000020214	SMN1	95	84.701	ENSBTAG00000005743	SMN2	97	84.342	Bos_taurus
ENSMMUG00000020214	SMN1	85	33.188	WBGene00004887	smn-1	94	32.432	Caenorhabditis_elegans
ENSMMUG00000020214	SMN1	100	97.802	ENSCJAG00000016290	-	100	97.802	Callithrix_jacchus
ENSMMUG00000020214	SMN1	95	87.900	ENSCAFG00000007812	SMN	97	87.900	Canis_familiaris
ENSMMUG00000020214	SMN1	95	87.900	ENSCAFG00020019229	-	90	87.900	Canis_lupus_dingo
ENSMMUG00000020214	SMN1	95	85.502	ENSCHIG00000015559	-	95	85.106	Capra_hircus
ENSMMUG00000020214	SMN1	99	90.110	ENSTSYG00000012058	-	96	95.000	Carlito_syrichta
ENSMMUG00000020214	SMN1	77	70.776	ENSCAPG00000011021	-	100	69.737	Cavia_aperea
ENSMMUG00000020214	SMN1	99	83.516	ENSCPOG00000036973	-	99	82.594	Cavia_porcellus
ENSMMUG00000020214	SMN1	100	81.250	ENSCPOG00000012328	-	96	82.578	Cavia_porcellus
ENSMMUG00000020214	SMN1	100	96.703	ENSCCAG00000018127	-	100	96.703	Cebus_capucinus
ENSMMUG00000020214	SMN1	100	98.901	ENSCATG00000037002	-	100	98.901	Cercocebus_atys
ENSMMUG00000020214	SMN1	99	81.509	ENSCLAG00000000284	-	99	81.509	Chinchilla_lanigera
ENSMMUG00000020214	SMN1	100	99.320	ENSCSAG00000015688	-	100	99.320	Chlorocebus_sabaeus
ENSMMUG00000020214	SMN1	81	85.938	ENSCHOG00000007346	-	100	74.603	Choloepus_hoffmanni
ENSMMUG00000020214	SMN1	98	61.538	ENSCPBG00000010968	-	99	61.852	Chrysemys_picta_bellii
ENSMMUG00000020214	SMN1	99	92.115	ENSCANG00000033324	-	100	86.641	Colobus_angolensis_palliatus
ENSMMUG00000020214	SMN1	100	99.237	ENSCANG00000038242	-	100	99.237	Colobus_angolensis_palliatus
ENSMMUG00000020214	SMN1	99	85.714	ENSCGRG00001017959	-	97	84.698	Cricetulus_griseus_chok1gshd
ENSMMUG00000020214	SMN1	99	65.068	ENSCGRG00001016998	-	96	65.480	Cricetulus_griseus_chok1gshd
ENSMMUG00000020214	SMN1	99	85.714	ENSCGRG00000007698	Smn1	97	84.698	Cricetulus_griseus_crigri
ENSMMUG00000020214	SMN1	82	64.286	ENSCSEG00000015227	smn1	97	50.534	Cynoglossus_semilaevis
ENSMMUG00000020214	SMN1	94	52.416	ENSCVAG00000007498	smn1	94	52.381	Cyprinodon_variegatus
ENSMMUG00000020214	SMN1	94	53.285	ENSDARG00000018494	smn1	96	54.380	Danio_rerio
ENSMMUG00000020214	SMN1	82	84.232	ENSDNOG00000007283	-	99	84.232	Dasypus_novemcinctus
ENSMMUG00000020214	SMN1	77	74.627	ENSDNOG00000045949	-	86	74.020	Dasypus_novemcinctus
ENSMMUG00000020214	SMN1	99	85.106	ENSDORG00000007082	Smn1	99	80.756	Dipodomys_ordii
ENSMMUG00000020214	SMN1	80	70.476	ENSETEG00000001406	-	89	70.652	Echinops_telfairi
ENSMMUG00000020214	SMN1	94	39.796	ENSEBUG00000011902	smn1	92	39.630	Eptatretus_burgeri
ENSMMUG00000020214	SMN1	99	77.739	ENSEASG00005018000	-	89	84.190	Equus_asinus_asinus
ENSMMUG00000020214	SMN1	95	88.929	ENSECAG00000015215	-	96	88.929	Equus_caballus
ENSMMUG00000020214	SMN1	89	81.746	ENSEEUG00000015777	-	100	81.746	Erinaceus_europaeus
ENSMMUG00000020214	SMN1	93	55.515	ENSELUG00000018067	smn1	94	53.818	Esox_lucius
ENSMMUG00000020214	SMN1	99	88.699	ENSFCAG00000028292	SMN	97	90.036	Felis_catus
ENSMMUG00000020214	SMN1	90	60.700	ENSFALG00000012320	-	91	59.470	Ficedula_albicollis
ENSMMUG00000020214	SMN1	99	79.798	ENSFDAG00000017683	-	99	80.808	Fukomys_damarensis
ENSMMUG00000020214	SMN1	68	57.303	ENSFHEG00000018508	smn1	96	51.292	Fundulus_heteroclitus
ENSMMUG00000020214	SMN1	97	49.451	ENSGMOG00000017279	smn1	93	50.000	Gadus_morhua
ENSMMUG00000020214	SMN1	93	59.623	ENSGALG00000002430	SMN	95	57.721	Gallus_gallus
ENSMMUG00000020214	SMN1	90	56.198	ENSGAFG00000009501	smn1	93	56.432	Gambusia_affinis
ENSMMUG00000020214	SMN1	92	54.615	ENSGACG00000010584	smn1	91	53.077	Gasterosteus_aculeatus
ENSMMUG00000020214	SMN1	91	38.679	ENSGAGG00000013639	-	90	38.624	Gopherus_agassizii
ENSMMUG00000020214	SMN1	96	63.636	ENSGAGG00000011374	-	97	61.566	Gopherus_agassizii
ENSMMUG00000020214	SMN1	100	83.588	ENSGGOG00000026704	-	99	96.667	Gorilla_gorilla
ENSMMUG00000020214	SMN1	97	97.802	ENSGGOG00000003872	-	100	97.561	Gorilla_gorilla
ENSMMUG00000020214	SMN1	92	55.725	ENSHBUG00000013987	smn1	94	55.805	Haplochromis_burtoni
ENSMMUG00000020214	SMN1	99	79.452	ENSHGLG00000001905	-	99	79.452	Heterocephalus_glaber_female
ENSMMUG00000020214	SMN1	99	79.798	ENSHGLG00000001018	-	96	81.119	Heterocephalus_glaber_female
ENSMMUG00000020214	SMN1	99	78.853	ENSHGLG00100018676	-	100	79.078	Heterocephalus_glaber_male
ENSMMUG00000020214	SMN1	99	79.798	ENSHGLG00100011252	-	96	81.119	Heterocephalus_glaber_male
ENSMMUG00000020214	SMN1	85	82.609	ENSHCOG00000017136	smn1	87	51.331	Hippocampus_comes
ENSMMUG00000020214	SMN1	91	51.866	ENSIPUG00000012580	smn1	83	50.725	Ictalurus_punctatus
ENSMMUG00000020214	SMN1	99	87.814	ENSSTOG00000012288	-	100	87.814	Ictidomys_tridecemlineatus
ENSMMUG00000020214	SMN1	66	61.494	ENSJJAG00000014853	-	89	65.143	Jaculus_jaculus
ENSMMUG00000020214	SMN1	92	55.109	ENSKMAG00000007239	smn1	96	53.435	Kryptolebias_marmoratus
ENSMMUG00000020214	SMN1	91	54.417	ENSLBEG00000022550	smn1	94	53.957	Labrus_bergylta
ENSMMUG00000020214	SMN1	93	37.410	ENSLACG00000009808	-	90	40.072	Latimeria_chalumnae
ENSMMUG00000020214	SMN1	93	53.788	ENSLOCG00000011339	smn1	93	56.379	Lepisosteus_oculatus
ENSMMUG00000020214	SMN1	99	87.912	ENSLAFG00000003425	-	100	81.690	Loxodonta_africana
ENSMMUG00000020214	SMN1	100	95.604	ENSMFAG00000008812	-	100	93.878	Macaca_fascicularis
ENSMMUG00000020214	SMN1	100	100.000	ENSMFAG00000031523	SMN1	100	100.000	Macaca_fascicularis
ENSMMUG00000020214	SMN1	76	85.202	ENSMNEG00000036423	-	87	85.202	Macaca_nemestrina
ENSMMUG00000020214	SMN1	100	100.000	ENSMNEG00000035094	-	100	100.000	Macaca_nemestrina
ENSMMUG00000020214	SMN1	100	99.618	ENSMLEG00000041902	-	100	99.618	Mandrillus_leucophaeus
ENSMMUG00000020214	SMN1	92	53.383	ENSMAMG00000011034	smn1	94	52.174	Mastacembelus_armatus
ENSMMUG00000020214	SMN1	92	53.435	ENSMZEG00005013634	smn1	94	55.805	Maylandia_zebra
ENSMMUG00000020214	SMN1	68	55.959	ENSMGAG00000008889	-	95	53.769	Meleagris_gallopavo
ENSMMUG00000020214	SMN1	99	83.516	ENSMAUG00000010262	Smn1	96	83.871	Mesocricetus_auratus
ENSMMUG00000020214	SMN1	99	89.011	ENSMICG00000034708	-	99	89.011	Microcebus_murinus
ENSMMUG00000020214	SMN1	99	83.154	ENSMOCG00000017833	Smn1	97	83.688	Microtus_ochrogaster
ENSMMUG00000020214	SMN1	93	50.763	ENSMMOG00000005504	smn1	94	52.045	Mola_mola
ENSMMUG00000020214	SMN1	85	83.333	ENSMODG00000001436	-	95	69.366	Monodelphis_domestica
ENSMMUG00000020214	SMN1	93	50.000	ENSMALG00000008025	smn1	94	51.095	Monopterus_albus
ENSMMUG00000020214	SMN1	99	84.615	MGP_CAROLIEiJ_G0018836	Smn1	96	85.000	Mus_caroli
ENSMMUG00000020214	SMN1	99	83.871	ENSMUSG00000021645	Smn1	96	85.000	Mus_musculus
ENSMMUG00000020214	SMN1	99	82.418	MGP_PahariEiJ_G0015911	Smn1	96	81.429	Mus_pahari
ENSMMUG00000020214	SMN1	99	83.516	MGP_SPRETEiJ_G0019718	Smn1	96	84.286	Mus_spretus
ENSMMUG00000020214	SMN1	99	88.929	ENSMPUG00000014470	-	95	89.963	Mustela_putorius_furo
ENSMMUG00000020214	SMN1	94	90.000	ENSMLUG00000010603	-	92	88.502	Myotis_lucifugus
ENSMMUG00000020214	SMN1	99	84.946	ENSNGAG00000019833	Smn1	97	85.765	Nannospalax_galili
ENSMMUG00000020214	SMN1	92	54.579	ENSNBRG00000023000	smn1	94	55.556	Neolamprologus_brichardi
ENSMMUG00000020214	SMN1	100	97.357	ENSNLEG00000004454	-	100	97.357	Nomascus_leucogenys
ENSMMUG00000020214	SMN1	80	63.596	ENSMEUG00000011393	-	99	65.066	Notamacropus_eugenii
ENSMMUG00000020214	SMN1	81	90.625	ENSOPRG00000002015	-	100	83.004	Ochotona_princeps
ENSMMUG00000020214	SMN1	99	81.690	ENSODEG00000015976	-	97	81.690	Octodon_degus
ENSMMUG00000020214	SMN1	92	55.830	ENSONIG00000011799	smn1	95	54.779	Oreochromis_niloticus
ENSMMUG00000020214	SMN1	78	90.698	ENSOANG00000001626	-	95	64.835	Ornithorhynchus_anatinus
ENSMMUG00000020214	SMN1	99	84.247	ENSOCUG00000017097	-	99	84.247	Oryctolagus_cuniculus
ENSMMUG00000020214	SMN1	99	80.000	ENSOCUG00000025183	-	96	80.282	Oryctolagus_cuniculus
ENSMMUG00000020214	SMN1	94	88.406	ENSOCUG00000026649	-	97	83.045	Oryctolagus_cuniculus
ENSMMUG00000020214	SMN1	92	53.612	ENSORLG00000010552	smn1	94	53.137	Oryzias_latipes
ENSMMUG00000020214	SMN1	92	52.692	ENSORLG00020007936	smn1	93	55.285	Oryzias_latipes_hni
ENSMMUG00000020214	SMN1	92	50.558	ENSORLG00015022425	smn1	94	52.747	Oryzias_latipes_hsok
ENSMMUG00000020214	SMN1	92	52.985	ENSOMEG00000007824	smn1	94	53.455	Oryzias_melastigma
ENSMMUG00000020214	SMN1	95	81.181	ENSOGAG00000031414	-	94	81.181	Otolemur_garnettii
ENSMMUG00000020214	SMN1	93	82.847	ENSOARG00000005425	-	99	82.847	Ovis_aries
ENSMMUG00000020214	SMN1	100	97.802	ENSPPAG00000036640	-	100	97.802	Pan_paniscus
ENSMMUG00000020214	SMN1	99	89.041	ENSPPRG00000005575	-	97	90.391	Panthera_pardus
ENSMMUG00000020214	SMN1	99	89.384	ENSPTIG00000007745	-	97	90.747	Panthera_tigris_altaica
ENSMMUG00000020214	SMN1	100	97.802	ENSPTRG00000016955	-	100	97.802	Pan_troglodytes
ENSMMUG00000020214	SMN1	100	94.505	ENSPANG00000000253	-	98	93.056	Papio_anubis
ENSMMUG00000020214	SMN1	100	99.660	ENSPANG00000013601	-	100	99.660	Papio_anubis
ENSMMUG00000020214	SMN1	76	91.892	ENSPKIG00000011096	smn1	93	54.772	Paramormyrops_kingsleyae
ENSMMUG00000020214	SMN1	92	60.741	ENSPSIG00000014787	-	90	59.041	Pelodiscus_sinensis
ENSMMUG00000020214	SMN1	92	49.446	ENSPMGG00000012285	smn1	95	51.311	Periophthalmus_magnuspinnatus
ENSMMUG00000020214	SMN1	90	41.985	ENSPMAG00000005004	smn1	91	41.155	Petromyzon_marinus
ENSMMUG00000020214	SMN1	95	71.084	ENSPCIG00000025764	-	97	71.127	Phascolarctos_cinereus
ENSMMUG00000020214	SMN1	92	53.612	ENSPFOG00000007786	smn1	94	53.309	Poecilia_formosa
ENSMMUG00000020214	SMN1	90	57.851	ENSPLAG00000012071	smn1	93	58.091	Poecilia_latipinna
ENSMMUG00000020214	SMN1	90	57.438	ENSPMEG00000017085	smn1	93	57.676	Poecilia_mexicana
ENSMMUG00000020214	SMN1	90	57.851	ENSPREG00000005824	smn1	93	58.091	Poecilia_reticulata
ENSMMUG00000020214	SMN1	91	96.283	ENSPPYG00000015533	-	97	96.283	Pongo_abelii
ENSMMUG00000020214	SMN1	83	65.138	ENSPPYG00000019189	-	99	65.596	Pongo_abelii
ENSMMUG00000020214	SMN1	87	85.938	ENSPCAG00000004187	-	99	81.111	Procavia_capensis
ENSMMUG00000020214	SMN1	85	94.915	ENSPCOG00000022307	-	99	77.632	Propithecus_coquereli
ENSMMUG00000020214	SMN1	99	89.384	ENSPVAG00000005977	-	99	89.384	Pteropus_vampyrus
ENSMMUG00000020214	SMN1	92	54.579	ENSPNYG00000014148	smn1	94	55.556	Pundamilia_nyererei
ENSMMUG00000020214	SMN1	93	51.145	ENSPNAG00000014007	smn1	82	49.821	Pygocentrus_nattereri
ENSMMUG00000020214	SMN1	99	83.516	ENSRNOG00000018067	Smn1	96	83.630	Rattus_norvegicus
ENSMMUG00000020214	SMN1	93	92.308	ENSRBIG00000036775	-	95	83.214	Rhinopithecus_bieti
ENSMMUG00000020214	SMN1	100	99.237	ENSRBIG00000037052	-	100	99.237	Rhinopithecus_bieti
ENSMMUG00000020214	SMN1	100	99.237	ENSRROG00000039399	-	100	99.237	Rhinopithecus_roxellana
ENSMMUG00000020214	SMN1	100	83.212	ENSRROG00000031088	-	100	80.339	Rhinopithecus_roxellana
ENSMMUG00000020214	SMN1	78	93.846	ENSSBOG00000020112	-	87	86.800	Saimiri_boliviensis_boliviensis
ENSMMUG00000020214	SMN1	100	96.703	ENSSBOG00000011665	-	100	96.703	Saimiri_boliviensis_boliviensis
ENSMMUG00000020214	SMN1	99	68.601	ENSSHAG00000001499	-	96	71.004	Sarcophilus_harrisii
ENSMMUG00000020214	SMN1	90	54.472	ENSSFOG00015015507	smn1	94	54.472	Scleropages_formosus
ENSMMUG00000020214	SMN1	93	51.311	ENSSMAG00000007922	smn1	94	52.518	Scophthalmus_maximus
ENSMMUG00000020214	SMN1	92	52.920	ENSSDUG00000018533	smn1	94	53.047	Seriola_dumerili
ENSMMUG00000020214	SMN1	92	53.285	ENSSLDG00000021135	smn1	94	53.405	Seriola_lalandi_dorsalis
ENSMMUG00000020214	SMN1	89	71.622	ENSSPUG00000000373	-	93	63.333	Sphenodon_punctatus
ENSMMUG00000020214	SMN1	92	53.160	ENSSPAG00000004345	smn1	94	54.545	Stegastes_partitus
ENSMMUG00000020214	SMN1	99	89.041	ENSSSCG00000016970	-	99	89.041	Sus_scrofa
ENSMMUG00000020214	SMN1	72	58.685	ENSSSCG00000033865	-	94	62.617	Sus_scrofa
ENSMMUG00000020214	SMN1	97	66.142	ENSSSCG00000029127	-	96	66.532	Sus_scrofa
ENSMMUG00000020214	SMN1	98	59.075	ENSTGUG00000001548	-	96	60.902	Taeniopygia_guttata
ENSMMUG00000020214	SMN1	91	48.881	ENSTRUG00000000736	smn	95	49.627	Takifugu_rubripes
ENSMMUG00000020214	SMN1	93	48.897	ENSTNIG00000009892	smn1	95	48.387	Tetraodon_nigroviridis
ENSMMUG00000020214	SMN1	70	88.043	ENSTBEG00000002399	-	89	88.043	Tupaia_belangeri
ENSMMUG00000020214	SMN1	94	87.500	ENSTTRG00000005080	-	95	85.053	Tursiops_truncatus
ENSMMUG00000020214	SMN1	70	89.130	ENSUAMG00000024947	-	67	89.130	Ursus_americanus
ENSMMUG00000020214	SMN1	94	91.250	ENSUMAG00000007842	-	72	89.680	Ursus_maritimus
ENSMMUG00000020214	SMN1	88	90.000	ENSVPAG00000009887	-	96	76.030	Vicugna_pacos
ENSMMUG00000020214	SMN1	95	87.900	ENSVVUG00000006934	-	97	87.900	Vulpes_vulpes
ENSMMUG00000020214	SMN1	90	67.901	ENSXETG00000018189	smn2	95	52.414	Xenopus_tropicalis
ENSMMUG00000020214	SMN1	90	36.620	ENSXETG00000004912	-	79	60.317	Xenopus_tropicalis
ENSMMUG00000020214	SMN1	91	56.557	ENSXMAG00000001521	smn1	94	56.790	Xiphophorus_maculatus