EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSMMUG00000023161 (Gene tree)
Gene ID: 721291
Gene Symbol: SMG6
Alias: C17orf31|EST1A|KIAA0732|SMG-6
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Macaca_mulatta
Status: putative
Strand: Minus strand
Length: 288855 bases
Position: chr16:1952262-2241116
Accession: 721291
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMUP00000030488	EST1	PF10374.9	5.3e-15	1	1
ENSMMUP00000030488	EST1_DNA_bind	PF10373.9	2e-60	1	1
ENSMMUP00000030488	PIN_4	PF13638.6	1.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMUT00000032581	SMG6-201	6867	XM_015118204	ENSMMUP00000030488	1419 (aa)	XP_014973690	F7FDL6
ENSMMUT00000074365	SMG6-202	591	-	ENSMMUP00000055432	197 (aa)	-	A0A1D5R545

Gene Model

Click here to download ENSMMUG00000023161's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcc03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMMUG00000023161's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMUG00000023161	SMG6	100	96.970	ENSG00000070366	SMG6	100	99.217	Homo_sapiens
ENSMMUG00000023161	SMG6	83	54.816	ENSAPOG00000019448	smg6	74	54.992	Acanthochromis_polyacanthus
ENSMMUG00000023161	SMG6	100	93.517	ENSAMEG00000007632	SMG6	100	93.517	Ailuropoda_melanoleuca
ENSMMUG00000023161	SMG6	71	59.670	ENSAOCG00000002630	smg6	74	55.234	Amphiprion_ocellaris
ENSMMUG00000023161	SMG6	71	59.670	ENSAPEG00000019101	smg6	74	55.312	Amphiprion_percula
ENSMMUG00000023161	SMG6	83	54.808	ENSATEG00000006483	smg6	73	54.701	Anabas_testudineus
ENSMMUG00000023161	SMG6	87	58.031	ENSACAG00000011783	SMG6	99	59.355	Anolis_carolinensis
ENSMMUG00000023161	SMG6	100	95.983	ENSANAG00000035760	SMG6	100	95.983	Aotus_nancymaae
ENSMMUG00000023161	SMG6	71	59.355	ENSACLG00000005288	smg6	86	53.145	Astatotilapia_calliptera
ENSMMUG00000023161	SMG6	73	61.443	ENSAMXG00000017326	smg6	99	50.863	Astyanax_mexicanus
ENSMMUG00000023161	SMG6	100	93.446	ENSBTAG00000000267	SMG6	100	93.446	Bos_taurus
ENSMMUG00000023161	SMG6	100	95.419	ENSCJAG00000001820	SMG6	100	95.419	Callithrix_jacchus
ENSMMUG00000023161	SMG6	100	93.446	ENSCAFG00000019260	SMG6	100	93.446	Canis_familiaris
ENSMMUG00000023161	SMG6	100	93.446	ENSCAFG00020009770	SMG6	100	93.446	Canis_lupus_dingo
ENSMMUG00000023161	SMG6	100	93.305	ENSCHIG00000021998	SMG6	100	93.305	Capra_hircus
ENSMMUG00000023161	SMG6	100	93.587	ENSTSYG00000003406	SMG6	100	97.065	Carlito_syrichta
ENSMMUG00000023161	SMG6	98	77.338	ENSCAPG00000016197	SMG6	99	82.670	Cavia_aperea
ENSMMUG00000023161	SMG6	100	90.845	ENSCPOG00000014878	SMG6	100	90.845	Cavia_porcellus
ENSMMUG00000023161	SMG6	100	95.983	ENSCCAG00000035801	SMG6	100	95.983	Cebus_capucinus
ENSMMUG00000023161	SMG6	100	99.084	ENSCATG00000031956	SMG6	100	99.084	Cercocebus_atys
ENSMMUG00000023161	SMG6	100	92.389	ENSCLAG00000006748	SMG6	100	92.389	Chinchilla_lanigera
ENSMMUG00000023161	SMG6	100	99.436	ENSCSAG00000013800	SMG6	100	99.436	Chlorocebus_sabaeus
ENSMMUG00000023161	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSMMUG00000023161	SMG6	100	72.261	ENSCPBG00000020369	SMG6	100	72.816	Chrysemys_picta_bellii
ENSMMUG00000023161	SMG6	98	98.848	ENSCANG00000031764	SMG6	100	100.000	Colobus_angolensis_palliatus
ENSMMUG00000023161	SMG6	55	88.107	ENSCGRG00001019595	Smg6	98	88.107	Cricetulus_griseus_chok1gshd
ENSMMUG00000023161	SMG6	98	84.870	ENSCGRG00000007782	Smg6	100	85.014	Cricetulus_griseus_crigri
ENSMMUG00000023161	SMG6	87	53.394	ENSCSEG00000012757	smg6	83	52.279	Cynoglossus_semilaevis
ENSMMUG00000023161	SMG6	74	56.743	ENSCVAG00000012789	smg6	74	53.417	Cyprinodon_variegatus
ENSMMUG00000023161	SMG6	98	55.129	ENSDARG00000100481	smg6	90	56.490	Danio_rerio
ENSMMUG00000023161	SMG6	100	93.023	ENSDNOG00000048283	SMG6	100	93.023	Dasypus_novemcinctus
ENSMMUG00000023161	SMG6	100	89.123	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
ENSMMUG00000023161	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSMMUG00000023161	SMG6	73	50.536	ENSEBUG00000005059	smg6	66	50.000	Eptatretus_burgeri
ENSMMUG00000023161	SMG6	99	94.072	ENSEASG00005009318	SMG6	99	94.072	Equus_asinus_asinus
ENSMMUG00000023161	SMG6	99	93.790	ENSECAG00000006519	SMG6	99	93.790	Equus_caballus
ENSMMUG00000023161	SMG6	100	82.030	ENSEEUG00000003493	SMG6	100	82.030	Erinaceus_europaeus
ENSMMUG00000023161	SMG6	71	60.185	ENSELUG00000005934	smg6	69	55.318	Esox_lucius
ENSMMUG00000023161	SMG6	100	94.292	ENSFCAG00000028817	SMG6	100	94.292	Felis_catus
ENSMMUG00000023161	SMG6	98	71.673	ENSFALG00000006538	SMG6	100	71.744	Ficedula_albicollis
ENSMMUG00000023161	SMG6	100	92.178	ENSFDAG00000015106	SMG6	100	92.178	Fukomys_damarensis
ENSMMUG00000023161	SMG6	83	53.230	ENSFHEG00000013282	smg6	75	53.385	Fundulus_heteroclitus
ENSMMUG00000023161	SMG6	53	69.159	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSMMUG00000023161	SMG6	100	71.756	ENSGALG00000003108	SMG6	98	71.825	Gallus_gallus
ENSMMUG00000023161	SMG6	83	53.997	ENSGAFG00000000379	smg6	74	54.225	Gambusia_affinis
ENSMMUG00000023161	SMG6	91	53.761	ENSGACG00000020521	smg6	100	53.466	Gasterosteus_aculeatus
ENSMMUG00000023161	SMG6	98	71.915	ENSGAGG00000025617	SMG6	100	72.482	Gopherus_agassizii
ENSMMUG00000023161	SMG6	100	98.168	ENSGGOG00000017156	SMG6	100	98.168	Gorilla_gorilla
ENSMMUG00000023161	SMG6	88	53.011	ENSHBUG00000021311	smg6	80	53.227	Haplochromis_burtoni
ENSMMUG00000023161	SMG6	100	91.907	ENSHGLG00000012882	SMG6	100	91.907	Heterocephalus_glaber_female
ENSMMUG00000023161	SMG6	100	91.977	ENSHGLG00100017815	SMG6	100	91.977	Heterocephalus_glaber_male
ENSMMUG00000023161	SMG6	71	59.065	ENSHCOG00000008761	smg6	83	59.009	Hippocampus_comes
ENSMMUG00000023161	SMG6	83	55.346	ENSIPUG00000012493	smg6	75	54.659	Ictalurus_punctatus
ENSMMUG00000023161	SMG6	100	94.010	ENSSTOG00000028127	SMG6	100	94.010	Ictidomys_tridecemlineatus
ENSMMUG00000023161	SMG6	79	88.938	ENSJJAG00000015367	Smg6	95	87.002	Jaculus_jaculus
ENSMMUG00000023161	SMG6	73	59.156	ENSKMAG00000000279	smg6	91	48.940	Kryptolebias_marmoratus
ENSMMUG00000023161	SMG6	55	58.974	ENSLACG00000000806	-	98	59.417	Latimeria_chalumnae
ENSMMUG00000023161	SMG6	73	65.482	ENSLOCG00000006448	smg6	100	55.232	Lepisosteus_oculatus
ENSMMUG00000023161	SMG6	100	92.812	ENSLAFG00000001261	SMG6	100	92.812	Loxodonta_africana
ENSMMUG00000023161	SMG6	100	99.789	ENSMFAG00000003394	SMG6	100	99.789	Macaca_fascicularis
ENSMMUG00000023161	SMG6	100	94.589	ENSMNEG00000044592	SMG6	100	94.589	Macaca_nemestrina
ENSMMUG00000023161	SMG6	98	97.044	ENSMLEG00000029353	SMG6	100	100.000	Mandrillus_leucophaeus
ENSMMUG00000023161	SMG6	83	56.138	ENSMAMG00000020119	smg6	98	49.646	Mastacembelus_armatus
ENSMMUG00000023161	SMG6	71	59.375	ENSMZEG00005024736	smg6	80	53.304	Maylandia_zebra
ENSMMUG00000023161	SMG6	73	66.320	ENSMGAG00000005401	-	99	66.320	Meleagris_gallopavo
ENSMMUG00000023161	SMG6	100	95.137	ENSMICG00000012913	SMG6	100	95.137	Microcebus_murinus
ENSMMUG00000023161	SMG6	100	48.104	ENSMMOG00000010883	smg6	100	48.310	Mola_mola
ENSMMUG00000023161	SMG6	100	86.146	ENSMODG00000010622	SMG6	100	86.146	Monodelphis_domestica
ENSMMUG00000023161	SMG6	83	54.390	ENSMALG00000001106	smg6	73	54.891	Monopterus_albus
ENSMMUG00000023161	SMG6	100	91.614	MGP_CAROLIEiJ_G0016729	Smg6	100	91.614	Mus_caroli
ENSMMUG00000023161	SMG6	100	91.402	ENSMUSG00000038290	Smg6	100	91.402	Mus_musculus
ENSMMUG00000023161	SMG6	100	91.121	MGP_PahariEiJ_G0017866	Smg6	100	91.121	Mus_pahari
ENSMMUG00000023161	SMG6	100	91.402	MGP_SPRETEiJ_G0017572	Smg6	100	91.402	Mus_spretus
ENSMMUG00000023161	SMG6	100	93.517	ENSMPUG00000013046	SMG6	100	93.517	Mustela_putorius_furo
ENSMMUG00000023161	SMG6	100	93.094	ENSMLUG00000005739	SMG6	100	93.094	Myotis_lucifugus
ENSMMUG00000023161	SMG6	98	90.569	ENSNGAG00000007287	Smg6	100	90.569	Nannospalax_galili
ENSMMUG00000023161	SMG6	88	52.580	ENSNBRG00000009511	smg6	87	52.941	Neolamprologus_brichardi
ENSMMUG00000023161	SMG6	98	97.561	ENSNLEG00000017171	SMG6	100	99.413	Nomascus_leucogenys
ENSMMUG00000023161	SMG6	98	82.471	ENSMEUG00000015804	SMG6	100	82.471	Notamacropus_eugenii
ENSMMUG00000023161	SMG6	62	90.950	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSMMUG00000023161	SMG6	100	85.574	ENSODEG00000008038	SMG6	100	84.469	Octodon_degus
ENSMMUG00000023161	SMG6	100	51.071	ENSONIG00000005594	smg6	100	52.032	Oreochromis_niloticus
ENSMMUG00000023161	SMG6	100	93.315	ENSOCUG00000013018	SMG6	100	93.455	Oryctolagus_cuniculus
ENSMMUG00000023161	SMG6	83	54.724	ENSORLG00000003317	smg6	74	54.867	Oryzias_latipes
ENSMMUG00000023161	SMG6	83	54.574	ENSORLG00020015343	smg6	74	54.403	Oryzias_latipes_hni
ENSMMUG00000023161	SMG6	83	54.524	ENSORLG00015020454	smg6	74	54.667	Oryzias_latipes_hsok
ENSMMUG00000023161	SMG6	83	53.616	ENSOMEG00000010838	smg6	75	54.058	Oryzias_melastigma
ENSMMUG00000023161	SMG6	100	94.507	ENSOGAG00000004483	SMG6	100	94.507	Otolemur_garnettii
ENSMMUG00000023161	SMG6	100	91.549	ENSOARG00000015076	SMG6	100	93.141	Ovis_aries
ENSMMUG00000023161	SMG6	100	97.886	ENSPPAG00000043296	SMG6	100	97.886	Pan_paniscus
ENSMMUG00000023161	SMG6	100	94.362	ENSPPRG00000014581	SMG6	100	94.362	Panthera_pardus
ENSMMUG00000023161	SMG6	98	94.440	ENSPTIG00000008925	SMG6	100	97.260	Panthera_tigris_altaica
ENSMMUG00000023161	SMG6	100	97.956	ENSPTRG00000008544	SMG6	100	99.217	Pan_troglodytes
ENSMMUG00000023161	SMG6	100	99.366	ENSPANG00000024588	SMG6	100	99.366	Papio_anubis
ENSMMUG00000023161	SMG6	89	70.993	ENSPSIG00000006660	SMG6	96	71.071	Pelodiscus_sinensis
ENSMMUG00000023161	SMG6	98	60.152	ENSPMGG00000000844	smg6	100	60.742	Periophthalmus_magnuspinnatus
ENSMMUG00000023161	SMG6	100	92.389	ENSPEMG00000020707	Smg6	100	92.389	Peromyscus_maniculatus_bairdii
ENSMMUG00000023161	SMG6	100	51.773	ENSPFOG00000012035	smg6	100	51.743	Poecilia_formosa
ENSMMUG00000023161	SMG6	77	56.947	ENSPLAG00000017660	smg6	74	54.403	Poecilia_latipinna
ENSMMUG00000023161	SMG6	77	56.667	ENSPMEG00000000258	smg6	74	54.717	Poecilia_mexicana
ENSMMUG00000023161	SMG6	83	54.710	ENSPREG00000010066	smg6	74	54.631	Poecilia_reticulata
ENSMMUG00000023161	SMG6	100	92.335	ENSPPYG00000007790	SMG6	100	92.335	Pongo_abelii
ENSMMUG00000023161	SMG6	100	88.654	ENSPCAG00000000552	SMG6	100	88.654	Procavia_capensis
ENSMMUG00000023161	SMG6	100	94.926	ENSPCOG00000020925	SMG6	100	94.926	Propithecus_coquereli
ENSMMUG00000023161	SMG6	86	100.000	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSMMUG00000023161	SMG6	88	53.840	ENSPNYG00000024151	smg6	86	55.123	Pundamilia_nyererei
ENSMMUG00000023161	SMG6	85	53.071	ENSPNAG00000015480	smg6	87	63.102	Pygocentrus_nattereri
ENSMMUG00000023161	SMG6	100	91.755	ENSRNOG00000003041	Smg6	100	91.755	Rattus_norvegicus
ENSMMUG00000023161	SMG6	100	98.661	ENSRBIG00000024746	SMG6	100	98.661	Rhinopithecus_bieti
ENSMMUG00000023161	SMG6	100	98.732	ENSRROG00000030423	SMG6	100	99.609	Rhinopithecus_roxellana
ENSMMUG00000023161	SMG6	100	95.842	ENSSBOG00000022518	SMG6	100	94.221	Saimiri_boliviensis_boliviensis
ENSMMUG00000023161	SMG6	98	85.366	ENSSHAG00000010045	SMG6	98	85.366	Sarcophilus_harrisii
ENSMMUG00000023161	SMG6	72	62.326	ENSSFOG00015005436	smg6	73	55.120	Scleropages_formosus
ENSMMUG00000023161	SMG6	83	55.400	ENSSMAG00000019777	smg6	73	55.027	Scophthalmus_maximus
ENSMMUG00000023161	SMG6	83	55.035	ENSSDUG00000016412	smg6	74	54.992	Seriola_dumerili
ENSMMUG00000023161	SMG6	80	54.170	ENSSLDG00000020747	smg6	77	54.045	Seriola_lalandi_dorsalis
ENSMMUG00000023161	SMG6	99	70.334	ENSSPUG00000007152	SMG6	99	70.334	Sphenodon_punctatus
ENSMMUG00000023161	SMG6	71	58.991	ENSSPAG00000015633	smg6	74	54.945	Stegastes_partitus
ENSMMUG00000023161	SMG6	100	92.746	ENSSSCG00000017826	SMG6	100	92.746	Sus_scrofa
ENSMMUG00000023161	SMG6	100	72.090	ENSTGUG00000005836	SMG6	100	72.230	Taeniopygia_guttata
ENSMMUG00000023161	SMG6	100	48.203	ENSTRUG00000000358	smg6	100	48.738	Takifugu_rubripes
ENSMMUG00000023161	SMG6	100	49.901	ENSTNIG00000016164	smg6	100	50.331	Tetraodon_nigroviridis
ENSMMUG00000023161	SMG6	100	89.359	ENSTBEG00000011424	SMG6	100	89.359	Tupaia_belangeri
ENSMMUG00000023161	SMG6	91	91.667	ENSTTRG00000001175	SMG6	91	91.667	Tursiops_truncatus
ENSMMUG00000023161	SMG6	100	93.741	ENSUAMG00000025152	SMG6	100	93.732	Ursus_americanus
ENSMMUG00000023161	SMG6	98	94.079	ENSUMAG00000009306	SMG6	100	94.079	Ursus_maritimus
ENSMMUG00000023161	SMG6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSMMUG00000023161	SMG6	100	93.305	ENSVVUG00000021727	SMG6	100	93.305	Vulpes_vulpes
ENSMMUG00000023161	SMG6	98	59.168	ENSXETG00000023799	SMG6	100	59.126	Xenopus_tropicalis
ENSMMUG00000023161	SMG6	72	59.796	ENSXCOG00000009867	smg6	74	55.183	Xiphophorus_couchianus
ENSMMUG00000023161	SMG6	83	54.460	ENSXMAG00000010321	smg6	74	54.105	Xiphophorus_maculatus