EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMMUG00000042504 (Gene tree)
Gene ID: 721030
Gene Symbol: APOBEC3A
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 3A
Gene Type: protein_coding
Species: Macaca_mulatta
Status: putative
Strand: Plus strand
Length: 5745 bases
Position: chr10:80939352-80945096
Accession: 721030
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMMUP00000048744	APOBEC_N	PF08210.11	3.6e-47	1	1
ENSMMUP00000045305	APOBEC_N	PF08210.11	4e-47	1	1
ENSMMUP00000041419	APOBEC_N	PF08210.11	4.7e-47	1	1
ENSMMUP00000045305	APOBEC_C	PF05240.14	2.9e-31	1	1
ENSMMUP00000048744	APOBEC_C	PF05240.14	3e-31	1	1
ENSMMUP00000041419	APOBEC_C	PF05240.14	3.4e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMMUT00000056519	-	663	-	ENSMMUP00000041419	220 (aa)	-	A0A1D5Q057
ENSMMUT00000076322	-	921	-	ENSMMUP00000048744	202 (aa)	-	F6M3K4
ENSMMUT00000078363	-	633	-	ENSMMUP00000045305	210 (aa)	-	A0A1D5QB87

Gene Model

Click here to download ENSMMUG00000042504's gene model file

Pathways

Pathway ID	Pathway Name	Source
mcc05170	Human immunodeficiency virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMMUG00000042504's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMMUG00000042504	APOBEC3A	95	41.361	ENSMMUG00000004017	APOBEC3F	99	41.361
ENSMMUG00000042504	APOBEC3A	97	86.667	ENSMMUG00000004015	-	98	88.542
ENSMMUG00000042504	APOBEC3A	97	40.102	ENSMMUG00000004018	APOBEC3C	97	40.102
ENSMMUG00000042504	APOBEC3A	92	36.269	ENSMMUG00000001016	APOBEC3H	89	34.158
ENSMMUG00000042504	APOBEC3A	98	62.766	ENSMMUG00000039346	APOBEC3G	95	62.766
ENSMMUG00000042504	APOBEC3A	92	32.105	ENSMMUG00000021171	APOBEC2	79	32.461
ENSMMUG00000042504	APOBEC3A	92	45.745	ENSMMUG00000019134	AICDA	98	43.871

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMMUG00000042504	APOBEC3A	97	81.383	ENSG00000179750	APOBEC3B	98	81.865	Homo_sapiens
ENSMMUG00000042504	APOBEC3A	100	81.188	ENSG00000128383	APOBEC3A	100	81.188	Homo_sapiens
ENSMMUG00000042504	APOBEC3A	96	54.639	ENSCJAG00000012500	-	96	54.639	Callithrix_jacchus
ENSMMUG00000042504	APOBEC3A	100	58.911	ENSTSYG00000035593	-	100	58.911	Carlito_syrichta
ENSMMUG00000042504	APOBEC3A	97	65.426	ENSCCAG00000027450	-	96	66.321	Cebus_capucinus
ENSMMUG00000042504	APOBEC3A	100	92.079	ENSCATG00000013527	-	100	92.079	Cercocebus_atys
ENSMMUG00000042504	APOBEC3A	73	89.116	ENSCSAG00000018401	-	70	89.116	Chlorocebus_sabaeus
ENSMMUG00000042504	APOBEC3A	97	84.043	ENSCSAG00000006445	-	77	82.383	Chlorocebus_sabaeus
ENSMMUG00000042504	APOBEC3A	100	85.149	ENSCANG00000030513	-	100	85.149	Colobus_angolensis_palliatus
ENSMMUG00000042504	APOBEC3A	97	81.915	ENSGGOG00000006721	APOBEC3B	98	82.383	Gorilla_gorilla
ENSMMUG00000042504	APOBEC3A	100	98.515	ENSMFAG00000008980	APOBEC3A	100	98.515	Macaca_fascicularis
ENSMMUG00000042504	APOBEC3A	95	87.234	ENSMNEG00000043211	-	93	87.234	Macaca_nemestrina
ENSMMUG00000042504	APOBEC3A	97	84.574	ENSMLEG00000004809	-	98	84.974	Mandrillus_leucophaeus
ENSMMUG00000042504	APOBEC3A	100	79.208	ENSNLEG00000015215	-	100	79.208	Nomascus_leucogenys
ENSMMUG00000042504	APOBEC3A	97	83.511	ENSPPAG00000009288	APOBEC3B	99	83.069	Pan_paniscus
ENSMMUG00000042504	APOBEC3A	99	78.109	ENSPTRG00000014384	APOBEC3B	99	78.109	Pan_troglodytes
ENSMMUG00000042504	APOBEC3A	100	91.089	ENSPANG00000006941	APOBEC3B	100	91.089	Papio_anubis
ENSMMUG00000042504	APOBEC3A	96	77.419	ENSPPYG00000011831	-	98	77.202	Pongo_abelii
ENSMMUG00000042504	APOBEC3A	76	57.792	ENSPCOG00000017606	-	97	57.792	Propithecus_coquereli
ENSMMUG00000042504	APOBEC3A	100	85.149	ENSRBIG00000042829	-	100	85.789	Rhinopithecus_bieti
ENSMMUG00000042504	APOBEC3A	100	84.158	ENSRROG00000028773	APOBEC3G	100	85.789	Rhinopithecus_roxellana