EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMNEG00000027401 (Gene tree)
Gene ID: 105490279
Gene Symbol: PSPC1
Alias: FLJ10955|PSP1
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Macaca_nemestrina
Status: putative
Strand: Minus strand
Length: 86640 bases
Position: chrKQ005265.1:19615418-19702057
Accession: 105490279
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMNEP00000006431	RRM_1	PF00076.22	3.1e-32	1	2
ENSMNEP00000006431	RRM_1	PF00076.22	3.1e-32	2	2
ENSMNEP00000006426	RRM_1	PF00076.22	4.3e-32	1	2
ENSMNEP00000006426	RRM_1	PF00076.22	4.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMNET00000030237	PSPC1-202	1410	-	ENSMNEP00000006431	469 (aa)	-	A0A2K6B4U9
ENSMNET00000030228	PSPC1-201	5792	XM_011755740	ENSMNEP00000006426	523 (aa)	XP_011754042	A0A2K6B4U4
ENSMNET00000030239	PSPC1-203	255	-	ENSMNEP00000006432	84 (aa)	-	A0A2K6B4U8

Gene Model

Click here to download ENSMNEG00000027401's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMNEG00000027401's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMNEG00000027401	PSPC1	88	58.723	ENSMNEG00000038895	SFPQ	51	68.579
ENSMNEG00000027401	PSPC1	88	60.390	ENSMNEG00000009698	NONO	87	72.549

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMNEG00000027401	PSPC1	100	99.235	ENSG00000121390	PSPC1	100	99.235	Homo_sapiens
ENSMNEG00000027401	PSPC1	85	76.427	ENSAPOG00000015946	pspc1	79	73.488	Acanthochromis_polyacanthus
ENSMNEG00000027401	PSPC1	100	98.470	ENSAMEG00000017420	PSPC1	100	98.470	Ailuropoda_melanoleuca
ENSMNEG00000027401	PSPC1	98	59.275	ENSACIG00000018695	pspc1	87	59.448	Amphilophus_citrinellus
ENSMNEG00000027401	PSPC1	85	75.931	ENSAOCG00000005279	pspc1	78	73.023	Amphiprion_ocellaris
ENSMNEG00000027401	PSPC1	85	75.931	ENSAPEG00000015927	pspc1	79	73.023	Amphiprion_percula
ENSMNEG00000027401	PSPC1	88	58.174	ENSATEG00000004878	pspc1	76	61.687	Anabas_testudineus
ENSMNEG00000027401	PSPC1	85	66.085	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSMNEG00000027401	PSPC1	77	93.812	ENSAPLG00000006246	PSPC1	100	93.812	Anas_platyrhynchos
ENSMNEG00000027401	PSPC1	88	53.066	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSMNEG00000027401	PSPC1	99	83.058	ENSACAG00000002093	PSPC1	88	91.631	Anolis_carolinensis
ENSMNEG00000027401	PSPC1	100	98.470	ENSANAG00000000059	PSPC1	100	98.470	Aotus_nancymaae
ENSMNEG00000027401	PSPC1	98	58.526	ENSACLG00000027220	pspc1	87	58.672	Astatotilapia_calliptera
ENSMNEG00000027401	PSPC1	85	74.939	ENSAMXG00000036881	pspc1	80	72.874	Astyanax_mexicanus
ENSMNEG00000027401	PSPC1	100	95.985	ENSBTAG00000003934	PSPC1	100	95.985	Bos_taurus
ENSMNEG00000027401	PSPC1	100	98.470	ENSCJAG00000004554	PSPC1	100	98.470	Callithrix_jacchus
ENSMNEG00000027401	PSPC1	100	98.470	ENSCAFG00020002009	PSPC1	100	98.470	Canis_lupus_dingo
ENSMNEG00000027401	PSPC1	100	95.985	ENSCHIG00000016708	PSPC1	100	95.985	Capra_hircus
ENSMNEG00000027401	PSPC1	80	88.152	ENSTSYG00000032882	PSPC1	93	85.511	Carlito_syrichta
ENSMNEG00000027401	PSPC1	100	96.558	ENSCPOG00000000395	PSPC1	100	96.558	Cavia_porcellus
ENSMNEG00000027401	PSPC1	100	98.470	ENSCCAG00000033498	PSPC1	100	98.470	Cebus_capucinus
ENSMNEG00000027401	PSPC1	100	99.618	ENSCATG00000036434	PSPC1	100	99.618	Cercocebus_atys
ENSMNEG00000027401	PSPC1	89	87.527	ENSCLAG00000005241	PSPC1	100	87.527	Chinchilla_lanigera
ENSMNEG00000027401	PSPC1	100	91.778	ENSCHOG00000008913	PSPC1	100	91.587	Choloepus_hoffmanni
ENSMNEG00000027401	PSPC1	99	86.692	ENSCPBG00000020859	PSPC1	89	94.004	Chrysemys_picta_bellii
ENSMNEG00000027401	PSPC1	65	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSMNEG00000027401	PSPC1	77	85.926	ENSCANG00000018948	PSPC1	87	100.000	Colobus_angolensis_palliatus
ENSMNEG00000027401	PSPC1	100	96.750	ENSCGRG00001018368	Pspc1	100	96.750	Cricetulus_griseus_chok1gshd
ENSMNEG00000027401	PSPC1	100	96.750	ENSCGRG00000011724	Pspc1	100	96.750	Cricetulus_griseus_crigri
ENSMNEG00000027401	PSPC1	84	70.127	ENSCVAG00000007679	-	78	68.246	Cyprinodon_variegatus
ENSMNEG00000027401	PSPC1	98	68.547	ENSDARG00000006621	pspc1	100	67.633	Danio_rerio
ENSMNEG00000027401	PSPC1	100	97.132	ENSDNOG00000011078	PSPC1	100	97.132	Dasypus_novemcinctus
ENSMNEG00000027401	PSPC1	100	94.073	ENSDORG00000016050	Pspc1	100	94.073	Dipodomys_ordii
ENSMNEG00000027401	PSPC1	55	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSMNEG00000027401	PSPC1	66	45.536	ENSEBUG00000010133	pspc1	72	51.273	Eptatretus_burgeri
ENSMNEG00000027401	PSPC1	86	65.926	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSMNEG00000027401	PSPC1	100	97.897	ENSEASG00005000119	PSPC1	100	97.897	Equus_asinus_asinus
ENSMNEG00000027401	PSPC1	100	97.897	ENSECAG00000017286	PSPC1	100	97.897	Equus_caballus
ENSMNEG00000027401	PSPC1	88	81.988	ENSEEUG00000011288	-	100	64.818	Erinaceus_europaeus
ENSMNEG00000027401	PSPC1	99	67.850	ENSELUG00000003746	pspc1	78	81.957	Esox_lucius
ENSMNEG00000027401	PSPC1	100	98.470	ENSFCAG00000027841	PSPC1	100	98.470	Felis_catus
ENSMNEG00000027401	PSPC1	89	94.647	ENSFALG00000008750	PSPC1	99	88.145	Ficedula_albicollis
ENSMNEG00000027401	PSPC1	100	94.646	ENSFDAG00000002617	PSPC1	100	94.646	Fukomys_damarensis
ENSMNEG00000027401	PSPC1	86	70.123	ENSGMOG00000015074	pspc1	86	65.376	Gadus_morhua
ENSMNEG00000027401	PSPC1	88	95.238	ENSGALG00000017142	PSPC1	89	94.647	Gallus_gallus
ENSMNEG00000027401	PSPC1	74	74.640	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSMNEG00000027401	PSPC1	85	70.250	ENSGACG00000014901	pspc1	92	73.394	Gasterosteus_aculeatus
ENSMNEG00000027401	PSPC1	91	59.583	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSMNEG00000027401	PSPC1	99	86.692	ENSGAGG00000019164	PSPC1	89	94.004	Gopherus_agassizii
ENSMNEG00000027401	PSPC1	100	99.044	ENSGGOG00000003414	PSPC1	100	99.044	Gorilla_gorilla
ENSMNEG00000027401	PSPC1	98	66.667	ENSHBUG00000001139	pspc1	87	69.528	Haplochromis_burtoni
ENSMNEG00000027401	PSPC1	100	96.558	ENSHGLG00000018811	PSPC1	100	96.558	Heterocephalus_glaber_female
ENSMNEG00000027401	PSPC1	75	92.286	ENSHGLG00100007962	PSPC1	100	92.286	Heterocephalus_glaber_male
ENSMNEG00000027401	PSPC1	89	66.430	ENSHCOG00000013251	pspc1	83	71.658	Hippocampus_comes
ENSMNEG00000027401	PSPC1	98	70.753	ENSIPUG00000013192	pspc1	88	73.673	Ictalurus_punctatus
ENSMNEG00000027401	PSPC1	100	97.706	ENSSTOG00000026833	PSPC1	100	97.706	Ictidomys_tridecemlineatus
ENSMNEG00000027401	PSPC1	100	97.323	ENSJJAG00000018334	Pspc1	100	97.323	Jaculus_jaculus
ENSMNEG00000027401	PSPC1	88	55.940	ENSKMAG00000013525	-	84	54.194	Kryptolebias_marmoratus
ENSMNEG00000027401	PSPC1	94	69.752	ENSLBEG00000004474	pspc1	73	74.716	Labrus_bergylta
ENSMNEG00000027401	PSPC1	99	76.111	ENSLACG00000010762	PSPC1	88	85.129	Latimeria_chalumnae
ENSMNEG00000027401	PSPC1	89	84.017	ENSLOCG00000010832	pspc1	91	84.017	Lepisosteus_oculatus
ENSMNEG00000027401	PSPC1	100	96.941	ENSLAFG00000010968	PSPC1	100	96.941	Loxodonta_africana
ENSMNEG00000027401	PSPC1	100	100.000	ENSMFAG00000032728	PSPC1	100	100.000	Macaca_fascicularis
ENSMNEG00000027401	PSPC1	100	100.000	ENSMMUG00000020262	PSPC1	100	100.000	Macaca_mulatta
ENSMNEG00000027401	PSPC1	100	100.000	ENSMLEG00000039043	PSPC1	99	100.000	Mandrillus_leucophaeus
ENSMNEG00000027401	PSPC1	85	73.201	ENSMAMG00000004333	pspc1	77	71.395	Mastacembelus_armatus
ENSMNEG00000027401	PSPC1	98	58.526	ENSMZEG00005005726	pspc1	87	58.672	Maylandia_zebra
ENSMNEG00000027401	PSPC1	77	93.596	ENSMGAG00000015134	PSPC1	100	93.596	Meleagris_gallopavo
ENSMNEG00000027401	PSPC1	99	90.733	ENSMAUG00000021067	Pspc1	99	90.909	Mesocricetus_auratus
ENSMNEG00000027401	PSPC1	100	98.088	ENSMICG00000013970	PSPC1	100	98.088	Microcebus_murinus
ENSMNEG00000027401	PSPC1	100	97.514	ENSMOCG00000006060	Pspc1	100	97.514	Microtus_ochrogaster
ENSMNEG00000027401	PSPC1	88	43.927	ENSMMOG00000004352	pspc1	58	52.923	Mola_mola
ENSMNEG00000027401	PSPC1	99	96.753	ENSMODG00000008029	PSPC1	78	96.289	Monodelphis_domestica
ENSMNEG00000027401	PSPC1	89	69.555	ENSMALG00000008914	pspc1	88	67.377	Monopterus_albus
ENSMNEG00000027401	PSPC1	100	97.328	MGP_CAROLIEiJ_G0019341	Pspc1	100	97.328	Mus_caroli
ENSMNEG00000027401	PSPC1	100	97.519	ENSMUSG00000021938	Pspc1	100	97.519	Mus_musculus
ENSMNEG00000027401	PSPC1	100	97.328	MGP_PahariEiJ_G0030359	Pspc1	100	97.328	Mus_pahari
ENSMNEG00000027401	PSPC1	100	97.328	MGP_SPRETEiJ_G0020232	Pspc1	100	97.328	Mus_spretus
ENSMNEG00000027401	PSPC1	100	98.088	ENSMPUG00000013347	PSPC1	100	98.088	Mustela_putorius_furo
ENSMNEG00000027401	PSPC1	100	96.198	ENSMLUG00000017663	PSPC1	100	96.198	Myotis_lucifugus
ENSMNEG00000027401	PSPC1	100	96.941	ENSNGAG00000011271	Pspc1	100	96.941	Nannospalax_galili
ENSMNEG00000027401	PSPC1	82	64.090	ENSNBRG00000014059	pspc1	76	69.207	Neolamprologus_brichardi
ENSMNEG00000027401	PSPC1	100	99.044	ENSNLEG00000001294	PSPC1	100	99.044	Nomascus_leucogenys
ENSMNEG00000027401	PSPC1	100	76.291	ENSMEUG00000000476	PSPC1	100	76.291	Notamacropus_eugenii
ENSMNEG00000027401	PSPC1	99	88.553	ENSODEG00000019012	-	100	84.688	Octodon_degus
ENSMNEG00000027401	PSPC1	100	85.660	ENSODEG00000007817	-	100	80.151	Octodon_degus
ENSMNEG00000027401	PSPC1	98	66.876	ENSONIG00000012010	pspc1	87	68.644	Oreochromis_niloticus
ENSMNEG00000027401	PSPC1	76	97.494	ENSOANG00000009017	-	100	97.494	Ornithorhynchus_anatinus
ENSMNEG00000027401	PSPC1	99	66.221	ENSOANG00000011381	-	99	63.740	Ornithorhynchus_anatinus
ENSMNEG00000027401	PSPC1	100	97.897	ENSOCUG00000006153	PSPC1	100	97.897	Oryctolagus_cuniculus
ENSMNEG00000027401	PSPC1	85	74.564	ENSORLG00000004232	-	87	64.182	Oryzias_latipes
ENSMNEG00000027401	PSPC1	87	72.372	ENSORLG00020000578	PSPC1	87	65.199	Oryzias_latipes_hni
ENSMNEG00000027401	PSPC1	85	74.442	ENSORLG00015017480	pspc1	82	68.421	Oryzias_latipes_hsok
ENSMNEG00000027401	PSPC1	100	98.662	ENSOGAG00000012643	PSPC1	100	98.662	Otolemur_garnettii
ENSMNEG00000027401	PSPC1	100	91.048	ENSOARG00000014163	PSPC1	100	91.048	Ovis_aries
ENSMNEG00000027401	PSPC1	89	92.688	ENSPPAG00000009836	PSPC1	93	99.390	Pan_paniscus
ENSMNEG00000027401	PSPC1	100	98.470	ENSPPRG00000008833	PSPC1	100	98.470	Panthera_pardus
ENSMNEG00000027401	PSPC1	100	83.365	ENSPTIG00000016917	PSPC1	100	83.365	Panthera_tigris_altaica
ENSMNEG00000027401	PSPC1	99	99.134	ENSPTRG00000005677	PSPC1	99	99.177	Pan_troglodytes
ENSMNEG00000027401	PSPC1	100	99.809	ENSPANG00000001992	PSPC1	100	99.809	Papio_anubis
ENSMNEG00000027401	PSPC1	98	72.591	ENSPKIG00000003578	pspc1	81	77.880	Paramormyrops_kingsleyae
ENSMNEG00000027401	PSPC1	99	86.654	ENSPSIG00000005168	PSPC1	89	93.790	Pelodiscus_sinensis
ENSMNEG00000027401	PSPC1	66	70.476	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSMNEG00000027401	PSPC1	100	97.323	ENSPEMG00000015214	Pspc1	100	97.323	Peromyscus_maniculatus_bairdii
ENSMNEG00000027401	PSPC1	54	47.692	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSMNEG00000027401	PSPC1	99	96.743	ENSPCIG00000017680	PSPC1	100	96.743	Phascolarctos_cinereus
ENSMNEG00000027401	PSPC1	90	70.000	ENSPFOG00000003362	pspc1	88	67.865	Poecilia_formosa
ENSMNEG00000027401	PSPC1	90	70.000	ENSPLAG00000011540	pspc1	87	67.865	Poecilia_latipinna
ENSMNEG00000027401	PSPC1	77	64.658	ENSPLAG00000004407	-	52	60.647	Poecilia_latipinna
ENSMNEG00000027401	PSPC1	76	65.278	ENSPMEG00000001025	-	51	60.647	Poecilia_mexicana
ENSMNEG00000027401	PSPC1	90	69.545	ENSPMEG00000008322	pspc1	87	67.442	Poecilia_mexicana
ENSMNEG00000027401	PSPC1	93	66.402	ENSPREG00000007786	pspc1	87	67.442	Poecilia_reticulata
ENSMNEG00000027401	PSPC1	100	98.662	ENSPPYG00000005186	PSPC1	100	98.662	Pongo_abelii
ENSMNEG00000027401	PSPC1	67	100.000	ENSPCAG00000008314	-	66	100.000	Procavia_capensis
ENSMNEG00000027401	PSPC1	100	94.073	ENSPCOG00000014364	PSPC1	100	94.073	Propithecus_coquereli
ENSMNEG00000027401	PSPC1	100	93.117	ENSPVAG00000005036	PSPC1	100	93.308	Pteropus_vampyrus
ENSMNEG00000027401	PSPC1	98	58.737	ENSPNYG00000008893	pspc1	87	58.672	Pundamilia_nyererei
ENSMNEG00000027401	PSPC1	98	69.872	ENSPNAG00000016511	pspc1	89	72.399	Pygocentrus_nattereri
ENSMNEG00000027401	PSPC1	100	97.132	ENSRNOG00000020782	Pspc1	100	97.132	Rattus_norvegicus
ENSMNEG00000027401	PSPC1	93	99.179	ENSRBIG00000036057	PSPC1	100	99.179	Rhinopithecus_bieti
ENSMNEG00000027401	PSPC1	100	99.235	ENSRROG00000036334	PSPC1	100	99.235	Rhinopithecus_roxellana
ENSMNEG00000027401	PSPC1	79	88.862	ENSSBOG00000028172	PSPC1	90	95.290	Saimiri_boliviensis_boliviensis
ENSMNEG00000027401	PSPC1	100	91.429	ENSSHAG00000004696	PSPC1	100	91.429	Sarcophilus_harrisii
ENSMNEG00000027401	PSPC1	85	81.454	ENSSFOG00015001395	pspc1	89	78.505	Scleropages_formosus
ENSMNEG00000027401	PSPC1	85	72.127	ENSSMAG00000001761	pspc1	82	76.970	Scophthalmus_maximus
ENSMNEG00000027401	PSPC1	85	76.179	ENSSDUG00000010651	pspc1	76	73.953	Seriola_dumerili
ENSMNEG00000027401	PSPC1	88	64.502	ENSSLDG00000004284	pspc1	81	61.806	Seriola_lalandi_dorsalis
ENSMNEG00000027401	PSPC1	100	88.910	ENSSARG00000000888	PSPC1	100	89.101	Sorex_araneus
ENSMNEG00000027401	PSPC1	85	58.168	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSMNEG00000027401	PSPC1	99	75.094	ENSSPUG00000008550	PSPC1	88	81.250	Sphenodon_punctatus
ENSMNEG00000027401	PSPC1	89	73.460	ENSSPAG00000001921	pspc1	77	72.558	Stegastes_partitus
ENSMNEG00000027401	PSPC1	100	96.947	ENSSSCG00000009569	PSPC1	100	96.947	Sus_scrofa
ENSMNEG00000027401	PSPC1	89	94.647	ENSTGUG00000011295	PSPC1	100	94.647	Taeniopygia_guttata
ENSMNEG00000027401	PSPC1	93	63.004	ENSTRUG00000011335	pspc1	77	66.180	Takifugu_rubripes
ENSMNEG00000027401	PSPC1	88	65.451	ENSTNIG00000010358	pspc1	84	66.746	Tetraodon_nigroviridis
ENSMNEG00000027401	PSPC1	99	80.087	ENSTBEG00000002361	PSPC1	100	75.908	Tupaia_belangeri
ENSMNEG00000027401	PSPC1	100	96.750	ENSTTRG00000003343	PSPC1	100	96.750	Tursiops_truncatus
ENSMNEG00000027401	PSPC1	75	98.575	ENSUAMG00000012309	PSPC1	100	98.575	Ursus_americanus
ENSMNEG00000027401	PSPC1	93	98.563	ENSUMAG00000013993	PSPC1	100	98.563	Ursus_maritimus
ENSMNEG00000027401	PSPC1	76	99.248	ENSVPAG00000010029	PSPC1	100	99.248	Vicugna_pacos
ENSMNEG00000027401	PSPC1	100	98.470	ENSVVUG00000006414	PSPC1	100	98.705	Vulpes_vulpes
ENSMNEG00000027401	PSPC1	74	73.184	ENSXCOG00000017438	pspc1	77	76.994	Xiphophorus_couchianus
ENSMNEG00000027401	PSPC1	74	73.464	ENSXMAG00000007929	pspc1	77	77.301	Xiphophorus_maculatus