EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMNEG00000042487 (Gene tree)
Gene ID: 105491519
Gene Symbol: USB1
Alias: C16orf57|FLJ13154|HVSL1|Mpn1
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Macaca_nemestrina
Status: putative
Strand: Minus strand
Length: 26063 bases
Position: chrKQ005373.1:26068620-26094682
Accession: 105491519
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMNEP00000039062	HVSL	PF09749.9	4.6e-63	1	1
ENSMNEP00000039073	HVSL	PF09749.9	2.6e-51	1	2
ENSMNEP00000039073	HVSL	PF09749.9	2.6e-51	2	2
ENSMNEP00000039078	HVSL	PF09749.9	6.4e-29	1	1
ENSMNEP00000039084	HVSL	PF09749.9	1.1e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMNET00000063561	USB1-203	477	-	ENSMNEP00000039078	158 (aa)	-	A0A2K6DT32
ENSMNET00000063556	USB1-202	744	-	ENSMNEP00000039073	247 (aa)	-	A0A2K6DT26
ENSMNET00000063545	USB1-201	2629	XM_011758028	ENSMNEP00000039062	265 (aa)	XP_011756330	A0A2K6DT55
ENSMNET00000063567	USB1-204	543	-	ENSMNEP00000039084	180 (aa)	-	A0A2K6DT24

Gene Model

Click here to download ENSMNEG00000042487's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMNEG00000042487's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMNEG00000042487	USB1	100	95.849	ENSG00000103005	USB1	100	96.262	Homo_sapiens
ENSMNEG00000042487	USB1	98	45.977	ENSAPOG00000011942	usb1	82	51.163	Acanthochromis_polyacanthus
ENSMNEG00000042487	USB1	100	84.015	ENSAMEG00000017205	USB1	100	84.015	Ailuropoda_melanoleuca
ENSMNEG00000042487	USB1	85	53.571	ENSACIG00000012234	usb1	82	53.571	Amphilophus_citrinellus
ENSMNEG00000042487	USB1	95	50.199	ENSAOCG00000014831	usb1	80	53.744	Amphiprion_ocellaris
ENSMNEG00000042487	USB1	95	50.598	ENSAPEG00000000296	usb1	80	54.185	Amphiprion_percula
ENSMNEG00000042487	USB1	99	48.669	ENSATEG00000009348	usb1	82	52.381	Anabas_testudineus
ENSMNEG00000042487	USB1	85	70.485	ENSAPLG00000002756	USB1	100	70.354	Anas_platyrhynchos
ENSMNEG00000042487	USB1	86	63.755	ENSACAG00000015481	USB1	100	63.755	Anolis_carolinensis
ENSMNEG00000042487	USB1	100	94.717	ENSANAG00000035640	USB1	100	94.717	Aotus_nancymaae
ENSMNEG00000042487	USB1	94	49.799	ENSACLG00000020586	usb1	80	52.655	Astatotilapia_calliptera
ENSMNEG00000042487	USB1	84	51.121	ENSAMXG00000040146	usb1	74	51.121	Astyanax_mexicanus
ENSMNEG00000042487	USB1	100	84.528	ENSBTAG00000015758	USB1	100	84.528	Bos_taurus
ENSMNEG00000042487	USB1	100	95.472	ENSCJAG00000011733	USB1	100	95.472	Callithrix_jacchus
ENSMNEG00000042487	USB1	99	81.985	ENSCAFG00000008556	USB1	73	80.882	Canis_familiaris
ENSMNEG00000042487	USB1	99	83.019	ENSCAFG00020009263	USB1	99	79.853	Canis_lupus_dingo
ENSMNEG00000042487	USB1	100	84.151	ENSCHIG00000024290	USB1	100	84.151	Capra_hircus
ENSMNEG00000042487	USB1	100	89.811	ENSTSYG00000006997	USB1	100	89.811	Carlito_syrichta
ENSMNEG00000042487	USB1	75	86.441	ENSCAPG00000009057	USB1	100	72.897	Cavia_aperea
ENSMNEG00000042487	USB1	100	82.836	ENSCPOG00000014325	USB1	100	81.716	Cavia_porcellus
ENSMNEG00000042487	USB1	100	95.094	ENSCCAG00000022132	USB1	100	95.094	Cebus_capucinus
ENSMNEG00000042487	USB1	100	99.367	ENSCATG00000032174	USB1	100	99.367	Cercocebus_atys
ENSMNEG00000042487	USB1	66	87.500	ENSCLAG00000007363	USB1	100	87.500	Chinchilla_lanigera
ENSMNEG00000042487	USB1	100	98.113	ENSCSAG00000004783	USB1	100	98.113	Chlorocebus_sabaeus
ENSMNEG00000042487	USB1	92	66.122	ENSCPBG00000026943	USB1	100	61.871	Chrysemys_picta_bellii
ENSMNEG00000042487	USB1	83	30.263	ENSCSAVG00000000894	-	82	30.263	Ciona_savignyi
ENSMNEG00000042487	USB1	100	96.981	ENSCANG00000037135	USB1	100	96.981	Colobus_angolensis_palliatus
ENSMNEG00000042487	USB1	100	84.701	ENSCGRG00001011243	USB1	100	84.328	Cricetulus_griseus_chok1gshd
ENSMNEG00000042487	USB1	100	84.701	ENSCGRG00000013252	USB1	100	84.328	Cricetulus_griseus_crigri
ENSMNEG00000042487	USB1	98	47.080	ENSCSEG00000013881	usb1	84	49.785	Cynoglossus_semilaevis
ENSMNEG00000042487	USB1	85	49.561	ENSCVAG00000009252	usb1	97	50.000	Cyprinodon_variegatus
ENSMNEG00000042487	USB1	90	47.699	ENSDARG00000003841	usb1	87	47.699	Danio_rerio
ENSMNEG00000042487	USB1	100	83.396	ENSDORG00000001888	Usb1	100	83.396	Dipodomys_ordii
ENSMNEG00000042487	USB1	77	40.476	FBgn0037713	CG16790	78	40.476	Drosophila_melanogaster
ENSMNEG00000042487	USB1	96	75.817	ENSETEG00000019682	USB1	100	69.663	Echinops_telfairi
ENSMNEG00000042487	USB1	84	50.901	ENSEBUG00000005889	usb1	78	50.901	Eptatretus_burgeri
ENSMNEG00000042487	USB1	100	86.792	ENSEASG00005005484	USB1	100	86.792	Equus_asinus_asinus
ENSMNEG00000042487	USB1	100	87.547	ENSECAG00000019493	USB1	91	87.547	Equus_caballus
ENSMNEG00000042487	USB1	66	78.977	ENSEEUG00000000154	USB1	66	78.977	Erinaceus_europaeus
ENSMNEG00000042487	USB1	86	49.561	ENSELUG00000010974	usb1	84	49.561	Esox_lucius
ENSMNEG00000042487	USB1	100	86.142	ENSFCAG00000002693	USB1	100	86.142	Felis_catus
ENSMNEG00000042487	USB1	85	66.372	ENSFALG00000006876	USB1	99	61.798	Ficedula_albicollis
ENSMNEG00000042487	USB1	100	85.768	ENSFDAG00000010052	USB1	100	85.019	Fukomys_damarensis
ENSMNEG00000042487	USB1	92	45.732	ENSFHEG00000012334	usb1	78	53.061	Fundulus_heteroclitus
ENSMNEG00000042487	USB1	84	50.673	ENSGMOG00000004228	usb1	99	50.673	Gadus_morhua
ENSMNEG00000042487	USB1	84	67.411	ENSGALG00000035604	USB1	100	63.158	Gallus_gallus
ENSMNEG00000042487	USB1	98	47.653	ENSGAFG00000021890	usb1	87	50.206	Gambusia_affinis
ENSMNEG00000042487	USB1	85	51.770	ENSGACG00000003257	usb1	81	51.770	Gasterosteus_aculeatus
ENSMNEG00000042487	USB1	100	63.139	ENSGAGG00000022572	USB1	100	62.271	Gopherus_agassizii
ENSMNEG00000042487	USB1	100	96.604	ENSGGOG00000017147	USB1	100	96.604	Gorilla_gorilla
ENSMNEG00000042487	USB1	94	50.602	ENSHBUG00000009823	usb1	81	53.304	Haplochromis_burtoni
ENSMNEG00000042487	USB1	100	86.517	ENSHGLG00000016078	USB1	98	85.768	Heterocephalus_glaber_female
ENSMNEG00000042487	USB1	100	86.517	ENSHGLG00100005562	USB1	98	85.768	Heterocephalus_glaber_male
ENSMNEG00000042487	USB1	82	54.378	ENSHCOG00000015633	usb1	86	54.260	Hippocampus_comes
ENSMNEG00000042487	USB1	85	53.571	ENSIPUG00000008601	usb1	78	53.571	Ictalurus_punctatus
ENSMNEG00000042487	USB1	100	84.672	ENSSTOG00000007548	USB1	100	84.249	Ictidomys_tridecemlineatus
ENSMNEG00000042487	USB1	100	85.821	ENSJJAG00000021859	Usb1	100	85.019	Jaculus_jaculus
ENSMNEG00000042487	USB1	96	49.027	ENSKMAG00000007200	usb1	80	53.304	Kryptolebias_marmoratus
ENSMNEG00000042487	USB1	75	52.261	ENSLBEG00000008452	usb1	64	53.158	Labrus_bergylta
ENSMNEG00000042487	USB1	78	59.524	ENSLACG00000000105	USB1	73	60.000	Latimeria_chalumnae
ENSMNEG00000042487	USB1	95	52.964	ENSLOCG00000000465	usb1	88	53.414	Lepisosteus_oculatus
ENSMNEG00000042487	USB1	100	65.314	ENSLAFG00000002267	USB1	100	65.185	Loxodonta_africana
ENSMNEG00000042487	USB1	100	100.000	ENSMFAG00000003926	USB1	100	100.000	Macaca_fascicularis
ENSMNEG00000042487	USB1	100	100.000	ENSMMUG00000022669	USB1	100	100.000	Macaca_mulatta
ENSMNEG00000042487	USB1	100	100.000	ENSMLEG00000028756	USB1	100	100.000	Mandrillus_leucophaeus
ENSMNEG00000042487	USB1	98	48.014	ENSMAMG00000015092	usb1	83	51.931	Mastacembelus_armatus
ENSMNEG00000042487	USB1	94	49.799	ENSMZEG00005010008	usb1	80	52.655	Maylandia_zebra
ENSMNEG00000042487	USB1	100	84.644	ENSMAUG00000007832	Usb1	100	83.895	Mesocricetus_auratus
ENSMNEG00000042487	USB1	100	91.772	ENSMICG00000004900	USB1	100	91.772	Microcebus_murinus
ENSMNEG00000042487	USB1	100	84.328	ENSMOCG00000022647	Usb1	100	83.895	Microtus_ochrogaster
ENSMNEG00000042487	USB1	86	52.193	ENSMMOG00000000490	usb1	88	52.193	Mola_mola
ENSMNEG00000042487	USB1	100	68.657	ENSMODG00000014067	USB1	100	67.164	Monodelphis_domestica
ENSMNEG00000042487	USB1	94	49.799	ENSMALG00000005930	usb1	80	52.863	Monopterus_albus
ENSMNEG00000042487	USB1	100	80.899	MGP_CAROLIEiJ_G0031421	Usb1	100	84.071	Mus_caroli
ENSMNEG00000042487	USB1	100	81.273	ENSMUSG00000031792	Usb1	100	84.956	Mus_musculus
ENSMNEG00000042487	USB1	100	81.648	MGP_PahariEiJ_G0023019	Usb1	100	85.470	Mus_pahari
ENSMNEG00000042487	USB1	100	80.524	MGP_SPRETEiJ_G0032540	Usb1	100	79.775	Mus_spretus
ENSMNEG00000042487	USB1	100	82.156	ENSMPUG00000004684	USB1	96	81.784	Mustela_putorius_furo
ENSMNEG00000042487	USB1	87	88.312	ENSMLUG00000007400	USB1	100	88.312	Myotis_lucifugus
ENSMNEG00000042487	USB1	100	83.333	ENSNGAG00000009703	Usb1	100	82.900	Nannospalax_galili
ENSMNEG00000042487	USB1	87	51.628	ENSNBRG00000008747	usb1	99	53.465	Neolamprologus_brichardi
ENSMNEG00000042487	USB1	100	94.304	ENSNLEG00000003340	USB1	100	97.200	Nomascus_leucogenys
ENSMNEG00000042487	USB1	94	59.615	ENSMEUG00000003328	-	100	60.645	Notamacropus_eugenii
ENSMNEG00000042487	USB1	75	78.814	ENSOPRG00000011803	USB1	72	84.848	Ochotona_princeps
ENSMNEG00000042487	USB1	100	82.022	ENSODEG00000016214	USB1	100	81.273	Octodon_degus
ENSMNEG00000042487	USB1	98	47.518	ENSONIG00000011063	usb1	81	52.863	Oreochromis_niloticus
ENSMNEG00000042487	USB1	85	74.222	ENSOANG00000012118	USB1	94	74.222	Ornithorhynchus_anatinus
ENSMNEG00000042487	USB1	94	47.390	ENSORLG00000012479	usb1	83	50.000	Oryzias_latipes
ENSMNEG00000042487	USB1	94	47.791	ENSORLG00020018671	usb1	99	47.407	Oryzias_latipes_hni
ENSMNEG00000042487	USB1	86	50.439	ENSORLG00015009679	usb1	84	50.439	Oryzias_latipes_hsok
ENSMNEG00000042487	USB1	85	50.000	ENSOMEG00000012930	usb1	82	49.561	Oryzias_melastigma
ENSMNEG00000042487	USB1	100	87.449	ENSOGAG00000003273	USB1	100	87.449	Otolemur_garnettii
ENSMNEG00000042487	USB1	95	82.609	ENSOARG00000001107	USB1	93	84.774	Ovis_aries
ENSMNEG00000042487	USB1	100	96.226	ENSPPAG00000042137	USB1	100	96.226	Pan_paniscus
ENSMNEG00000042487	USB1	100	86.142	ENSPPRG00000024797	USB1	100	86.142	Panthera_pardus
ENSMNEG00000042487	USB1	100	86.142	ENSPTIG00000007506	USB1	100	86.142	Panthera_tigris_altaica
ENSMNEG00000042487	USB1	100	95.547	ENSPTRG00000008172	USB1	100	97.196	Pan_troglodytes
ENSMNEG00000042487	USB1	100	100.000	ENSPANG00000025138	USB1	100	100.000	Papio_anubis
ENSMNEG00000042487	USB1	93	52.419	ENSPKIG00000015109	usb1	86	51.172	Paramormyrops_kingsleyae
ENSMNEG00000042487	USB1	85	54.425	ENSPSIG00000004305	USB1	100	54.425	Pelodiscus_sinensis
ENSMNEG00000042487	USB1	84	52.018	ENSPMGG00000017725	usb1	85	52.018	Periophthalmus_magnuspinnatus
ENSMNEG00000042487	USB1	100	82.784	ENSPEMG00000016183	Usb1	100	80.147	Peromyscus_maniculatus_bairdii
ENSMNEG00000042487	USB1	89	48.945	ENSPMAG00000000462	usb1	100	48.945	Petromyzon_marinus
ENSMNEG00000042487	USB1	98	47.653	ENSPFOG00000011130	usb1	82	51.754	Poecilia_formosa
ENSMNEG00000042487	USB1	98	47.653	ENSPLAG00000009820	usb1	82	51.754	Poecilia_latipinna
ENSMNEG00000042487	USB1	98	47.653	ENSPMEG00000006402	usb1	82	51.754	Poecilia_mexicana
ENSMNEG00000042487	USB1	92	43.558	ENSPREG00000001047	usb1	79	53.571	Poecilia_reticulata
ENSMNEG00000042487	USB1	95	93.254	ENSPPYG00000007401	USB1	100	93.254	Pongo_abelii
ENSMNEG00000042487	USB1	100	94.304	ENSPCOG00000022612	USB1	100	94.304	Propithecus_coquereli
ENSMNEG00000042487	USB1	100	81.132	ENSPVAG00000004613	USB1	100	81.132	Pteropus_vampyrus
ENSMNEG00000042487	USB1	94	51.082	ENSPNYG00000022262	usb1	81	53.304	Pundamilia_nyererei
ENSMNEG00000042487	USB1	98	47.126	ENSPNAG00000011736	usb1	76	51.786	Pygocentrus_nattereri
ENSMNEG00000042487	USB1	100	83.521	ENSRNOG00000013216	Usb1	100	82.772	Rattus_norvegicus
ENSMNEG00000042487	USB1	100	98.734	ENSRBIG00000044466	USB1	100	99.065	Rhinopithecus_bieti
ENSMNEG00000042487	USB1	100	98.734	ENSRROG00000029211	USB1	100	98.734	Rhinopithecus_roxellana
ENSMNEG00000042487	USB1	100	94.340	ENSSBOG00000029362	USB1	100	94.340	Saimiri_boliviensis_boliviensis
ENSMNEG00000042487	USB1	83	73.516	ENSSHAG00000006993	USB1	96	70.082	Sarcophilus_harrisii
ENSMNEG00000042487	USB1	87	55.844	ENSSFOG00015023663	usb1	73	55.844	Scleropages_formosus
ENSMNEG00000042487	USB1	98	48.913	ENSSMAG00000015834	usb1	99	47.959	Scophthalmus_maximus
ENSMNEG00000042487	USB1	85	54.911	ENSSDUG00000002949	usb1	83	54.911	Seriola_dumerili
ENSMNEG00000042487	USB1	98	49.421	ENSSLDG00000014174	usb1	80	54.425	Seriola_lalandi_dorsalis
ENSMNEG00000042487	USB1	81	68.692	ENSSPUG00000006741	USB1	100	68.692	Sphenodon_punctatus
ENSMNEG00000042487	USB1	98	46.181	ENSSPAG00000007484	usb1	80	51.982	Stegastes_partitus
ENSMNEG00000042487	USB1	100	83.643	ENSSSCG00000002807	USB1	100	82.156	Sus_scrofa
ENSMNEG00000042487	USB1	80	69.811	ENSTGUG00000004792	USB1	99	63.396	Taeniopygia_guttata
ENSMNEG00000042487	USB1	98	48.134	ENSTRUG00000021069	usb1	86	49.785	Takifugu_rubripes
ENSMNEG00000042487	USB1	98	45.769	ENSTNIG00000000626	usb1	83	48.214	Tetraodon_nigroviridis
ENSMNEG00000042487	USB1	88	61.207	ENSTBEG00000001507	USB1	100	61.207	Tupaia_belangeri
ENSMNEG00000042487	USB1	100	84.015	ENSUAMG00000016823	USB1	100	84.387	Ursus_americanus
ENSMNEG00000042487	USB1	81	87.850	ENSUMAG00000021369	USB1	100	87.850	Ursus_maritimus
ENSMNEG00000042487	USB1	96	51.656	ENSVPAG00000009834	-	59	88.333	Vicugna_pacos
ENSMNEG00000042487	USB1	99	82.836	ENSVVUG00000023700	USB1	93	85.477	Vulpes_vulpes
ENSMNEG00000042487	USB1	82	55.046	ENSXETG00000013795	usb1	94	53.390	Xenopus_tropicalis
ENSMNEG00000042487	USB1	86	52.193	ENSXMAG00000024687	usb1	67	52.193	Xiphophorus_maculatus