EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMNEG00000043316 (Gene tree)
Gene ID: 105464432
Gene Symbol: APOBEC3D
Alias: -
Full Name: Macaca nemestrina apolipoprotein B mRNA editing enzyme catalytic subunit 3D (APOBEC3D)%2C mRNA.
Gene Type: protein_coding
Species: Macaca_nemestrina
Status: putative
Strand: Minus strand
Length: 29151 bases
Position: chrKQ006630.1:9393497-9422647
Accession: NM_001345940
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMNEP00000040939	APOBEC_N	PF08210.11	4.2e-108	1	2
ENSMNEP00000040939	APOBEC_N	PF08210.11	4.2e-108	2	2
ENSMNEP00000040950	APOBEC_N	PF08210.11	2.9e-107	1	2
ENSMNEP00000040950	APOBEC_N	PF08210.11	2.9e-107	2	2
ENSMNEP00000040943	APOBEC_N	PF08210.11	9e-95	1	2
ENSMNEP00000040943	APOBEC_N	PF08210.11	9e-95	2	2
ENSMNEP00000040943	APOBEC_C	PF05240.14	4e-66	1	2
ENSMNEP00000040943	APOBEC_C	PF05240.14	4e-66	2	2
ENSMNEP00000040939	APOBEC_C	PF05240.14	2.5e-64	1	2
ENSMNEP00000040939	APOBEC_C	PF05240.14	2.5e-64	2	2
ENSMNEP00000040950	APOBEC_C	PF05240.14	1.5e-63	1	2
ENSMNEP00000040950	APOBEC_C	PF05240.14	1.5e-63	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMNET00000065438	-	1008	-	ENSMNEP00000040943	335 (aa)	-	A0A2K6DYF8
ENSMNET00000065445	-	1666	XM_011712334	ENSMNEP00000040950	395 (aa)	XP_011710636	A0A2K6DYF9
ENSMNET00000065442	-	1385	XM_011712338	ENSMNEP00000040947	102 (aa)	-	A0A2K6DYG7
ENSMNET00000065434	-	1577	XM_011712333	ENSMNEP00000040939	395 (aa)	XP_011710635	A0A2K6DYE3

Gene Model

Click here to download ENSMNEG00000043316's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMNEG00000043316's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMNEG00000043316	APOBEC3D	89	42.742	ENSMNEG00000039259	APOBEC3H	88	43.820
ENSMNEG00000043316	APOBEC3D	100	60.497	ENSMNEG00000043211	-	97	60.497
ENSMNEG00000043316	APOBEC3D	99	40.741	ENSMNEG00000038847	APOBEC3G	96	39.947
ENSMNEG00000043316	APOBEC3D	95	41.899	ENSMNEG00000043421	AICDA	94	41.135
ENSMNEG00000043316	APOBEC3D	96	34.000	ENSMNEG00000045497	APOBEC2	88	34.000
ENSMNEG00000043316	APOBEC3D	53	44.595	ENSMNEG00000029670	APOBEC1	58	44.595
ENSMNEG00000043316	APOBEC3D	100	74.731	ENSMNEG00000045196	APOBEC3C	100	74.731

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMNEG00000043316	APOBEC3D	100	76.344	ENSG00000244509	APOBEC3C	100	76.344	Homo_sapiens
ENSMNEG00000043316	APOBEC3D	100	75.335	ENSG00000128394	APOBEC3F	100	75.335	Homo_sapiens
ENSMNEG00000043316	APOBEC3D	100	77.215	ENSG00000243811	APOBEC3D	100	77.215	Homo_sapiens
ENSMNEG00000043316	APOBEC3D	100	67.342	ENSANAG00000030088	-	99	67.766	Aotus_nancymaae
ENSMNEG00000043316	APOBEC3D	78	66.667	ENSCJAG00000015317	-	100	67.424	Callithrix_jacchus
ENSMNEG00000043316	APOBEC3D	96	48.889	ENSCAFG00020002615	-	99	50.802	Canis_lupus_dingo
ENSMNEG00000043316	APOBEC3D	100	54.645	ENSTSYG00000034260	-	98	54.645	Carlito_syrichta
ENSMNEG00000043316	APOBEC3D	97	56.831	ENSTSYG00000028254	-	98	59.701	Carlito_syrichta
ENSMNEG00000043316	APOBEC3D	98	51.099	ENSTSYG00000030036	-	99	53.077	Carlito_syrichta
ENSMNEG00000043316	APOBEC3D	99	66.842	ENSCCAG00000030932	-	86	66.842	Cebus_capucinus
ENSMNEG00000043316	APOBEC3D	98	92.391	ENSCATG00000033502	-	95	92.391	Cercocebus_atys
ENSMNEG00000043316	APOBEC3D	100	73.656	ENSCATG00000043226	APOBEC3C	100	73.656	Cercocebus_atys
ENSMNEG00000043316	APOBEC3D	100	75.269	ENSCSAG00000006402	APOBEC3C	100	75.269	Chlorocebus_sabaeus
ENSMNEG00000043316	APOBEC3D	100	82.785	ENSCSAG00000006382	APOBEC3F	100	82.785	Chlorocebus_sabaeus
ENSMNEG00000043316	APOBEC3D	100	84.557	ENSCANG00000031957	-	100	84.557	Colobus_angolensis_palliatus
ENSMNEG00000043316	APOBEC3D	100	75.269	ENSCANG00000039177	APOBEC3C	100	75.269	Colobus_angolensis_palliatus
ENSMNEG00000043316	APOBEC3D	95	90.370	ENSCANG00000033269	-	99	90.370	Colobus_angolensis_palliatus
ENSMNEG00000043316	APOBEC3D	100	81.769	ENSCANG00000032904	-	100	81.769	Colobus_angolensis_palliatus
ENSMNEG00000043316	APOBEC3D	96	35.751	ENSDNOG00000044642	-	99	35.751	Dasypus_novemcinctus
ENSMNEG00000043316	APOBEC3D	100	47.449	ENSEASG00005018641	-	96	54.331	Equus_asinus_asinus
ENSMNEG00000043316	APOBEC3D	99	49.730	ENSECAG00000006071	-	100	42.894	Equus_caballus
ENSMNEG00000043316	APOBEC3D	100	76.676	ENSGGOG00000038678	APOBEC3F	100	76.676	Gorilla_gorilla
ENSMNEG00000043316	APOBEC3D	100	76.882	ENSGGOG00000036587	-	100	76.882	Gorilla_gorilla
ENSMNEG00000043316	APOBEC3D	99	47.150	ENSHGLG00000017315	-	95	47.150	Heterocephalus_glaber_female
ENSMNEG00000043316	APOBEC3D	99	47.150	ENSHGLG00100003105	-	95	47.150	Heterocephalus_glaber_male
ENSMNEG00000043316	APOBEC3D	100	75.806	ENSMFAG00000016792	APOBEC3C	100	75.806	Macaca_fascicularis
ENSMNEG00000043316	APOBEC3D	100	83.110	ENSMFAG00000004037	APOBEC3F	100	83.110	Macaca_fascicularis
ENSMNEG00000043316	APOBEC3D	100	93.165	ENSMFAG00000002331	-	100	93.165	Macaca_fascicularis
ENSMNEG00000043316	APOBEC3D	100	96.709	ENSMMUG00000004017	APOBEC3F	100	96.709	Macaca_mulatta
ENSMNEG00000043316	APOBEC3D	98	76.630	ENSMMUG00000004018	APOBEC3C	95	76.630	Macaca_mulatta
ENSMNEG00000043316	APOBEC3D	100	73.656	ENSMLEG00000036992	APOBEC3C	100	73.656	Mandrillus_leucophaeus
ENSMNEG00000043316	APOBEC3D	100	83.378	ENSMLEG00000029642	APOBEC3F	100	83.378	Mandrillus_leucophaeus
ENSMNEG00000043316	APOBEC3D	99	52.880	ENSMICG00000042615	-	89	55.039	Microcebus_murinus
ENSMNEG00000043316	APOBEC3D	99	45.223	ENSMLUG00000023676	-	99	45.223	Myotis_lucifugus
ENSMNEG00000043316	APOBEC3D	100	75.443	ENSNLEG00000035811	-	100	75.443	Nomascus_leucogenys
ENSMNEG00000043316	APOBEC3D	100	73.118	ENSNLEG00000028392	APOBEC3C	100	73.118	Nomascus_leucogenys
ENSMNEG00000043316	APOBEC3D	99	40.464	ENSOGAG00000033404	-	100	40.464	Otolemur_garnettii
ENSMNEG00000043316	APOBEC3D	99	44.974	ENSOGAG00000030300	-	99	44.974	Otolemur_garnettii
ENSMNEG00000043316	APOBEC3D	99	43.846	ENSOGAG00000032498	-	99	43.846	Otolemur_garnettii
ENSMNEG00000043316	APOBEC3D	99	77.848	ENSPPAG00000028218	-	98	77.848	Pan_paniscus
ENSMNEG00000043316	APOBEC3D	100	77.419	ENSPPAG00000014118	APOBEC3C	100	77.419	Pan_paniscus
ENSMNEG00000043316	APOBEC3D	98	49.189	ENSPPRG00000003726	-	98	49.189	Panthera_pardus
ENSMNEG00000043316	APOBEC3D	97	85.926	ENSPTRG00000014385	APOBEC3C	100	85.926	Pan_troglodytes
ENSMNEG00000043316	APOBEC3D	100	75.696	ENSPTRG00000041588	APOBEC3D	100	75.696	Pan_troglodytes
ENSMNEG00000043316	APOBEC3D	100	81.769	ENSPANG00000010775	APOBEC3F	100	81.769	Papio_anubis
ENSMNEG00000043316	APOBEC3D	100	73.656	ENSPPYG00000011832	APOBEC3C	100	73.656	Pongo_abelii
ENSMNEG00000043316	APOBEC3D	76	59.200	ENSPCOG00000018072	-	100	59.200	Propithecus_coquereli
ENSMNEG00000043316	APOBEC3D	76	57.364	ENSPCOG00000022067	-	98	57.364	Propithecus_coquereli
ENSMNEG00000043316	APOBEC3D	81	50.407	ENSPVAG00000009461	-	71	50.407	Pteropus_vampyrus
ENSMNEG00000043316	APOBEC3D	100	79.832	ENSRBIG00000042297	-	100	91.111	Rhinopithecus_bieti
ENSMNEG00000043316	APOBEC3D	100	80.939	ENSRBIG00000030323	-	100	80.939	Rhinopithecus_bieti
ENSMNEG00000043316	APOBEC3D	100	83.770	ENSRBIG00000030834	-	100	83.770	Rhinopithecus_bieti
ENSMNEG00000043316	APOBEC3D	100	80.447	ENSRROG00000029996	-	100	80.447	Rhinopithecus_roxellana
ENSMNEG00000043316	APOBEC3D	100	83.246	ENSRROG00000028557	-	100	83.246	Rhinopithecus_roxellana
ENSMNEG00000043316	APOBEC3D	100	81.233	ENSRROG00000029045	APOBEC3C	100	81.233	Rhinopithecus_roxellana
ENSMNEG00000043316	APOBEC3D	99	69.608	ENSSBOG00000032780	-	100	69.608	Saimiri_boliviensis_boliviensis
ENSMNEG00000043316	APOBEC3D	92	46.961	ENSUAMG00000004433	-	99	46.961	Ursus_americanus
ENSMNEG00000043316	APOBEC3D	98	47.826	ENSUMAG00000014441	-	86	51.220	Ursus_maritimus
ENSMNEG00000043316	APOBEC3D	79	53.020	ENSVVUG00000014628	-	91	53.608	Vulpes_vulpes