EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMNEG00000045073 (Gene tree)
Gene ID: 105471048
Gene Symbol: CHD1
Alias: -
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Macaca_nemestrina
Status: putative
Strand: Minus strand
Length: 76928 bases
Position: chrKQ008235.1:1662820-1739747
Accession: 105471048
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMNEP00000045121	ResIII	PF04851.15	3.4e-07	1	1
ENSMNEP00000045118	ResIII	PF04851.15	3.4e-07	1	1
ENSMNEP00000045115	ResIII	PF04851.15	3.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMNET00000069629	CHD1-202	5109	-	ENSMNEP00000045118	1702 (aa)	-	A0A2K6EAC6
ENSMNET00000069632	CHD1-203	5091	-	ENSMNEP00000045121	1696 (aa)	-	A0A2K6EAC5
ENSMNET00000069626	CHD1-201	7901	XM_011723395	ENSMNEP00000045115	1713 (aa)	XP_011721698	A0A2K6EAC4

Gene Model

Click here to download ENSMNEG00000045073's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMNEG00000045073's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMNEG00000045073	CHD1	50	36.742	ENSMNEG00000040847	CHD6	85	40.164
ENSMNEG00000045073	CHD1	96	56.868	ENSMNEG00000036875	-	91	59.297

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMNEG00000045073	CHD1	100	99.241	ENSG00000153922	CHD1	100	99.241	Homo_sapiens
ENSMNEG00000045073	CHD1	68	82.627	ENSAPOG00000005764	chd1	97	82.971	Acanthochromis_polyacanthus
ENSMNEG00000045073	CHD1	89	77.008	ENSAOCG00000023105	chd1	94	77.531	Amphiprion_ocellaris
ENSMNEG00000045073	CHD1	89	78.198	ENSAPEG00000013544	chd1	94	78.721	Amphiprion_percula
ENSMNEG00000045073	CHD1	91	77.165	ENSATEG00000010676	chd1	92	77.814	Anabas_testudineus
ENSMNEG00000045073	CHD1	71	82.319	ENSAMXG00000010843	chd1	91	83.502	Astyanax_mexicanus
ENSMNEG00000045073	CHD1	100	99.825	ENSCATG00000032035	CHD1	100	99.882	Cercocebus_atys
ENSMNEG00000045073	CHD1	100	99.883	ENSCSAG00000015339	CHD1	100	99.883	Chlorocebus_sabaeus
ENSMNEG00000045073	CHD1	54	88.781	ENSCPBG00000015831	CHD1	99	84.405	Chrysemys_picta_bellii
ENSMNEG00000045073	CHD1	100	97.818	ENSCANG00000036916	CHD1	100	97.818	Colobus_angolensis_palliatus
ENSMNEG00000045073	CHD1	100	95.510	ENSCGRG00001023943	Chd1	100	95.569	Cricetulus_griseus_chok1gshd
ENSMNEG00000045073	CHD1	100	95.510	ENSCGRG00000008652	Chd1	100	95.569	Cricetulus_griseus_crigri
ENSMNEG00000045073	CHD1	89	75.637	ENSCSEG00000009553	chd1	95	76.362	Cynoglossus_semilaevis
ENSMNEG00000045073	CHD1	92	89.201	ENSEASG00005016110	CHD1	99	97.641	Equus_asinus_asinus
ENSMNEG00000045073	CHD1	89	77.907	ENSELUG00000017677	chd1	93	77.921	Esox_lucius
ENSMNEG00000045073	CHD1	72	81.255	ENSFHEG00000021164	chd1	87	82.759	Fundulus_heteroclitus
ENSMNEG00000045073	CHD1	96	77.297	ENSGMOG00000001537	chd1	96	67.185	Gadus_morhua
ENSMNEG00000045073	CHD1	92	89.547	ENSGALG00000031327	-	96	89.739	Gallus_gallus
ENSMNEG00000045073	CHD1	83	81.694	ENSGAFG00000019880	chd1	92	82.844	Gambusia_affinis
ENSMNEG00000045073	CHD1	100	95.713	ENSGGOG00000011463	CHD1	100	95.713	Gorilla_gorilla
ENSMNEG00000045073	CHD1	88	79.178	ENSHCOG00000014222	chd1	91	79.611	Hippocampus_comes
ENSMNEG00000045073	CHD1	87	81.715	ENSIPUG00000001369	chd1	95	79.610	Ictalurus_punctatus
ENSMNEG00000045073	CHD1	63	95.033	ENSLAFG00000023183	CHD1	99	95.033	Loxodonta_africana
ENSMNEG00000045073	CHD1	100	100.000	ENSMFAG00000031226	CHD1	100	100.000	Macaca_fascicularis
ENSMNEG00000045073	CHD1	83	99.578	ENSMMUG00000014090	CHD1	99	99.578	Macaca_mulatta
ENSMNEG00000045073	CHD1	100	95.932	ENSMLEG00000041096	CHD1	100	96.344	Mandrillus_leucophaeus
ENSMNEG00000045073	CHD1	73	80.403	ENSMZEG00005010957	chd1	94	80.287	Maylandia_zebra
ENSMNEG00000045073	CHD1	100	92.886	ENSMOCG00000019121	Chd1	100	93.003	Microtus_ochrogaster
ENSMNEG00000045073	CHD1	79	78.634	ENSMALG00000013317	chd1	95	78.430	Monopterus_albus
ENSMNEG00000045073	CHD1	100	94.114	MGP_CAROLIEiJ_G0021099	Chd1	99	96.861	Mus_caroli
ENSMNEG00000045073	CHD1	100	94.406	ENSMUSG00000023852	Chd1	99	97.045	Mus_musculus
ENSMNEG00000045073	CHD1	100	93.590	MGP_PahariEiJ_G0023414	Chd1	99	97.048	Mus_pahari
ENSMNEG00000045073	CHD1	89	76.010	ENSNBRG00000006860	chd1	91	77.807	Neolamprologus_brichardi
ENSMNEG00000045073	CHD1	100	96.612	ENSNLEG00000014493	CHD1	100	96.612	Nomascus_leucogenys
ENSMNEG00000045073	CHD1	100	92.638	ENSOANG00000004891	CHD1	100	94.229	Ornithorhynchus_anatinus
ENSMNEG00000045073	CHD1	60	77.394	ENSORLG00015016725	chd1	93	77.291	Oryzias_latipes_hsok
ENSMNEG00000045073	CHD1	100	97.774	ENSPPAG00000043367	CHD1	100	97.774	Pan_paniscus
ENSMNEG00000045073	CHD1	100	99.183	ENSPTRG00000017103	CHD1	100	99.183	Pan_troglodytes
ENSMNEG00000045073	CHD1	100	100.000	ENSPANG00000006387	CHD1	100	100.000	Papio_anubis
ENSMNEG00000045073	CHD1	91	78.318	ENSPKIG00000024719	chd1	94	78.975	Paramormyrops_kingsleyae
ENSMNEG00000045073	CHD1	73	81.315	ENSPMGG00000005785	chd1	93	81.395	Periophthalmus_magnuspinnatus
ENSMNEG00000045073	CHD1	100	95.627	ENSPEMG00000015939	Chd1	100	95.627	Peromyscus_maniculatus_bairdii
ENSMNEG00000045073	CHD1	50	77.844	ENSPLAG00000006473	-	85	77.924	Poecilia_latipinna
ENSMNEG00000045073	CHD1	97	74.805	ENSPREG00000004209	chd1	97	74.669	Poecilia_reticulata
ENSMNEG00000045073	CHD1	83	95.710	ENSRNOG00000014434	Chd1	99	95.781	Rattus_norvegicus
ENSMNEG00000045073	CHD1	100	96.816	ENSRBIG00000044325	CHD1	100	96.848	Rhinopithecus_bieti
ENSMNEG00000045073	CHD1	100	99.533	ENSRROG00000001726	CHD1	100	99.533	Rhinopithecus_roxellana
ENSMNEG00000045073	CHD1	72	81.930	ENSSFOG00015007161	chd1	90	82.602	Scleropages_formosus
ENSMNEG00000045073	CHD1	79	78.750	ENSSDUG00000018314	chd1	94	78.824	Seriola_dumerili
ENSMNEG00000045073	CHD1	52	83.713	ENSSLDG00000017244	chd1	84	86.019	Seriola_lalandi_dorsalis
ENSMNEG00000045073	CHD1	79	79.617	ENSSPAG00000007024	chd1	95	79.176	Stegastes_partitus
ENSMNEG00000045073	CHD1	86	98.078	ENSSSCG00000014177	CHD1	100	97.907	Sus_scrofa
ENSMNEG00000045073	CHD1	91	75.290	ENSTRUG00000010282	chd1	96	73.084	Takifugu_rubripes
ENSMNEG00000045073	CHD1	72	77.451	ENSTNIG00000007101	chd1	95	78.094	Tetraodon_nigroviridis
ENSMNEG00000045073	CHD1	97	72.716	ENSXCOG00000017184	chd1	97	72.495	Xiphophorus_couchianus
ENSMNEG00000045073	CHD1	77	78.582	ENSXMAG00000014538	chd1	95	78.632	Xiphophorus_maculatus