EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSMOCG00000000122 (Gene tree)
Gene ID: 101996828
Gene Symbol: Polr1a
Alias: 194kDa|2900087K15Rik|3010014K16Rik|RPA194|Rpo1-4|mRPA1
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 64441 bases
Position: chrJH996430.1:12161803-12226243
Accession: 101996828
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000000127	RNA_pol_Rpb1_5	PF04998.17	2e-103	1	1
ENSMOCP00000000128	RNA_pol_Rpb1_5	PF04998.17	2.3e-91	1	1
ENSMOCP00000000129	RNA_pol_Rpb1_5	PF04998.17	2.6e-91	1	1
ENSMOCP00000000127	RNA_pol_Rpb1_4	PF05000.17	1.2e-25	1	1
ENSMOCP00000000128	RNA_pol_Rpb1_4	PF05000.17	1.2e-25	1	1
ENSMOCP00000000129	RNA_pol_Rpb1_4	PF05000.17	1.3e-25	1	1
ENSMOCP00000000129	RNA_pol_Rpb1_2	PF00623.20	4.6e-70	1	1
ENSMOCP00000000128	RNA_pol_Rpb1_2	PF00623.20	4.8e-70	1	1
ENSMOCP00000000127	RNA_pol_Rpb1_2	PF00623.20	4.9e-70	1	1
ENSMOCP00000000127	RNA_pol_Rpb1_3	PF04983.18	5.3e-37	1	1
ENSMOCP00000000129	RNA_pol_Rpb1_3	PF04983.18	6.7e-37	1	1
ENSMOCP00000000128	RNA_pol_Rpb1_3	PF04983.18	6.8e-37	1	1
ENSMOCP00000000129	RNA_pol_Rpb1_1	PF04997.12	1.4e-21	1	1
ENSMOCP00000000128	RNA_pol_Rpb1_1	PF04997.12	1.8e-21	1	1
ENSMOCP00000000127	RNA_pol_Rpb1_1	PF04997.12	1.9e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000000154	-	5001	-	ENSMOCP00000000129	1666 (aa)	-	-
ENSMOCT00000000153	-	5088	-	ENSMOCP00000000128	1695 (aa)	-	-
ENSMOCT00000000152	-	5357	XM_005364745	ENSMOCP00000000127	1716 (aa)	XP_005364802	UPI00038C5EA4

Gene Model

Click here to download ENSMOCG00000000122's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000000122's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMOCG00000000122	Polr1a	68	34.286	ENSMOCG00000018279	Polr2a	51	49.412
ENSMOCG00000000122	Polr1a	63	33.898	ENSMOCG00000012185	Polr3a	69	33.898

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000000122	Polr1a	100	87.377	ENSG00000068654	POLR1A	93	94.574	Homo_sapiens
ENSMOCG00000000122	Polr1a	71	67.561	ENSAPOG00000017945	polr1a	99	67.561	Acanthochromis_polyacanthus
ENSMOCG00000000122	Polr1a	100	88.225	ENSAMEG00000005807	POLR1A	100	90.369	Ailuropoda_melanoleuca
ENSMOCG00000000122	Polr1a	96	67.405	ENSACIG00000022147	polr1a	100	66.805	Amphilophus_citrinellus
ENSMOCG00000000122	Polr1a	100	66.339	ENSAOCG00000017336	polr1a	100	67.624	Amphiprion_ocellaris
ENSMOCG00000000122	Polr1a	94	72.917	ENSAPEG00000016105	polr1a	98	72.917	Amphiprion_percula
ENSMOCG00000000122	Polr1a	100	65.706	ENSATEG00000016773	polr1a	100	65.932	Anabas_testudineus
ENSMOCG00000000122	Polr1a	85	72.653	ENSAPLG00000013871	POLR1A	99	72.388	Anas_platyrhynchos
ENSMOCG00000000122	Polr1a	99	69.432	ENSACAG00000012141	POLR1A	99	69.204	Anolis_carolinensis
ENSMOCG00000000122	Polr1a	100	86.790	ENSANAG00000033927	POLR1A	100	86.674	Aotus_nancymaae
ENSMOCG00000000122	Polr1a	100	61.930	ENSACLG00000020541	polr1a	100	62.145	Astatotilapia_calliptera
ENSMOCG00000000122	Polr1a	100	87.420	ENSBTAG00000006481	POLR1A	100	87.703	Bos_taurus
ENSMOCG00000000122	Polr1a	99	38.833	WBGene00012999	rpoa-1	77	57.609	Caenorhabditis_elegans
ENSMOCG00000000122	Polr1a	100	86.161	ENSCJAG00000019547	POLR1A	100	86.277	Callithrix_jacchus
ENSMOCG00000000122	Polr1a	100	87.645	ENSCAFG00000007613	POLR1A	100	87.819	Canis_familiaris
ENSMOCG00000000122	Polr1a	100	87.935	ENSCAFG00020014752	POLR1A	100	88.109	Canis_lupus_dingo
ENSMOCG00000000122	Polr1a	100	86.838	ENSCHIG00000018204	POLR1A	100	86.430	Capra_hircus
ENSMOCG00000000122	Polr1a	100	86.303	ENSTSYG00000002761	POLR1A	100	86.303	Carlito_syrichta
ENSMOCG00000000122	Polr1a	97	83.971	ENSCAPG00000010132	POLR1A	100	84.211	Cavia_aperea
ENSMOCG00000000122	Polr1a	100	88.591	ENSCPOG00000012350	POLR1A	100	88.766	Cavia_porcellus
ENSMOCG00000000122	Polr1a	100	86.624	ENSCCAG00000019839	POLR1A	100	86.740	Cebus_capucinus
ENSMOCG00000000122	Polr1a	100	87.782	ENSCATG00000029786	POLR1A	100	87.319	Cercocebus_atys
ENSMOCG00000000122	Polr1a	100	88.727	ENSCLAG00000005187	POLR1A	100	88.727	Chinchilla_lanigera
ENSMOCG00000000122	Polr1a	100	87.203	ENSCSAG00000016251	POLR1A	100	87.261	Chlorocebus_sabaeus
ENSMOCG00000000122	Polr1a	50	92.941	ENSCHOG00000003766	-	84	92.941	Choloepus_hoffmanni
ENSMOCG00000000122	Polr1a	99	74.331	ENSCPBG00000001115	POLR1A	99	74.214	Chrysemys_picta_bellii
ENSMOCG00000000122	Polr1a	99	46.761	ENSCSAVG00000007184	-	93	63.200	Ciona_savignyi
ENSMOCG00000000122	Polr1a	100	84.664	ENSCANG00000031785	POLR1A	100	84.549	Colobus_angolensis_palliatus
ENSMOCG00000000122	Polr1a	100	90.047	ENSCGRG00001006651	Polr1a	100	90.512	Cricetulus_griseus_chok1gshd
ENSMOCG00000000122	Polr1a	60	94.537	ENSCGRG00000010834	Polr1a	100	95.317	Cricetulus_griseus_crigri
ENSMOCG00000000122	Polr1a	100	62.289	ENSCSEG00000020190	polr1a	100	61.739	Cynoglossus_semilaevis
ENSMOCG00000000122	Polr1a	100	64.529	ENSCVAG00000020941	polr1a	100	64.315	Cyprinodon_variegatus
ENSMOCG00000000122	Polr1a	100	66.513	ENSDARG00000098375	polr1a	100	66.802	Danio_rerio
ENSMOCG00000000122	Polr1a	100	81.660	ENSDNOG00000010829	POLR1A	100	81.544	Dasypus_novemcinctus
ENSMOCG00000000122	Polr1a	100	89.282	ENSDORG00000008298	Polr1a	100	89.282	Dipodomys_ordii
ENSMOCG00000000122	Polr1a	80	44.718	FBgn0019938	RpI1	99	43.246	Drosophila_melanogaster
ENSMOCG00000000122	Polr1a	73	96.875	ENSETEG00000000412	-	72	96.875	Echinops_telfairi
ENSMOCG00000000122	Polr1a	89	47.545	ENSEBUG00000005667	-	93	67.442	Eptatretus_burgeri
ENSMOCG00000000122	Polr1a	100	87.898	ENSEASG00005001625	POLR1A	100	88.477	Equus_asinus_asinus
ENSMOCG00000000122	Polr1a	100	87.782	ENSECAG00000036306	-	100	90.506	Equus_caballus
ENSMOCG00000000122	Polr1a	100	87.782	ENSECAG00000010092	POLR1A	100	90.506	Equus_caballus
ENSMOCG00000000122	Polr1a	100	87.782	ENSECAG00000030510	-	100	90.506	Equus_caballus
ENSMOCG00000000122	Polr1a	85	95.745	ENSEEUG00000000676	POLR1A	85	95.556	Erinaceus_europaeus
ENSMOCG00000000122	Polr1a	100	67.189	ENSELUG00000012769	polr1a	99	67.054	Esox_lucius
ENSMOCG00000000122	Polr1a	100	87.594	ENSFCAG00000008966	POLR1A	100	87.652	Felis_catus
ENSMOCG00000000122	Polr1a	99	71.756	ENSFALG00000010082	POLR1A	99	71.176	Ficedula_albicollis
ENSMOCG00000000122	Polr1a	100	88.882	ENSFDAG00000013726	POLR1A	100	89.057	Fukomys_damarensis
ENSMOCG00000000122	Polr1a	100	61.610	ENSFHEG00000005996	polr1a	100	61.449	Fundulus_heteroclitus
ENSMOCG00000000122	Polr1a	100	60.163	ENSGMOG00000002230	polr1a	100	59.895	Gadus_morhua
ENSMOCG00000000122	Polr1a	91	69.167	ENSGALG00000038160	-	99	68.614	Gallus_gallus
ENSMOCG00000000122	Polr1a	100	64.692	ENSGAFG00000015266	polr1a	100	64.634	Gambusia_affinis
ENSMOCG00000000122	Polr1a	100	64.302	ENSGACG00000018791	polr1a	100	64.064	Gasterosteus_aculeatus
ENSMOCG00000000122	Polr1a	89	75.538	ENSGAGG00000004984	-	96	80.552	Gopherus_agassizii
ENSMOCG00000000122	Polr1a	100	87.435	ENSGGOG00000001788	POLR1A	100	86.914	Gorilla_gorilla
ENSMOCG00000000122	Polr1a	92	63.708	ENSHBUG00000020021	polr1a	97	67.364	Haplochromis_burtoni
ENSMOCG00000000122	Polr1a	100	88.882	ENSHGLG00000006334	POLR1A	100	88.882	Heterocephalus_glaber_female
ENSMOCG00000000122	Polr1a	100	88.624	ENSHGLG00100006614	POLR1A	100	88.624	Heterocephalus_glaber_male
ENSMOCG00000000122	Polr1a	100	62.637	ENSHCOG00000003345	polr1a	100	62.384	Hippocampus_comes
ENSMOCG00000000122	Polr1a	100	66.551	ENSIPUG00000013174	polr1a	100	66.203	Ictalurus_punctatus
ENSMOCG00000000122	Polr1a	100	86.896	ENSSTOG00000012580	POLR1A	100	87.303	Ictidomys_tridecemlineatus
ENSMOCG00000000122	Polr1a	100	90.465	ENSJJAG00000013113	Polr1a	100	90.756	Jaculus_jaculus
ENSMOCG00000000122	Polr1a	100	65.505	ENSKMAG00000007399	polr1a	100	65.058	Kryptolebias_marmoratus
ENSMOCG00000000122	Polr1a	94	69.019	ENSLBEG00000015401	polr1a	99	69.019	Labrus_bergylta
ENSMOCG00000000122	Polr1a	55	75.896	ENSLACG00000003218	polr1a	99	75.896	Latimeria_chalumnae
ENSMOCG00000000122	Polr1a	100	70.272	ENSLOCG00000010881	polr1a	100	69.693	Lepisosteus_oculatus
ENSMOCG00000000122	Polr1a	100	87.522	ENSLAFG00000014948	POLR1A	100	86.860	Loxodonta_africana
ENSMOCG00000000122	Polr1a	100	87.261	ENSMFAG00000046097	POLR1A	100	87.319	Macaca_fascicularis
ENSMOCG00000000122	Polr1a	100	87.261	ENSMMUG00000015815	POLR1A	100	87.319	Macaca_mulatta
ENSMOCG00000000122	Polr1a	100	87.261	ENSMNEG00000043313	POLR1A	100	87.319	Macaca_nemestrina
ENSMOCG00000000122	Polr1a	100	86.624	ENSMLEG00000042428	POLR1A	100	86.682	Mandrillus_leucophaeus
ENSMOCG00000000122	Polr1a	100	65.799	ENSMAMG00000016565	polr1a	100	66.202	Mastacembelus_armatus
ENSMOCG00000000122	Polr1a	100	65.338	ENSMZEG00005004915	polr1a	100	65.565	Maylandia_zebra
ENSMOCG00000000122	Polr1a	99	69.441	ENSMGAG00000013111	POLR1A	99	69.066	Meleagris_gallopavo
ENSMOCG00000000122	Polr1a	92	95.486	ENSMAUG00000008497	Polr1a	100	95.550	Mesocricetus_auratus
ENSMOCG00000000122	Polr1a	100	88.252	ENSMICG00000000757	POLR1A	100	88.310	Microcebus_murinus
ENSMOCG00000000122	Polr1a	100	65.215	ENSMMOG00000010216	polr1a	100	64.945	Mola_mola
ENSMOCG00000000122	Polr1a	100	75.143	ENSMODG00000009335	POLR1A	94	82.105	Monodelphis_domestica
ENSMOCG00000000122	Polr1a	100	65.621	ENSMALG00000013363	polr1a	100	65.119	Monopterus_albus
ENSMOCG00000000122	Polr1a	100	92.666	MGP_CAROLIEiJ_G0028494	Polr1a	100	92.317	Mus_caroli
ENSMOCG00000000122	Polr1a	100	92.724	ENSMUSG00000049553	Polr1a	100	92.375	Mus_musculus
ENSMOCG00000000122	Polr1a	100	93.477	MGP_PahariEiJ_G0022230	Polr1a	100	93.128	Mus_pahari
ENSMOCG00000000122	Polr1a	100	90.852	MGP_SPRETEiJ_G0029499	Polr1a	100	91.481	Mus_spretus
ENSMOCG00000000122	Polr1a	100	87.594	ENSMPUG00000009135	POLR1A	100	87.768	Mustela_putorius_furo
ENSMOCG00000000122	Polr1a	100	86.914	ENSMLUG00000015723	POLR1A	100	87.203	Myotis_lucifugus
ENSMOCG00000000122	Polr1a	100	92.317	ENSNGAG00000017907	Polr1a	100	92.491	Nannospalax_galili
ENSMOCG00000000122	Polr1a	100	65.893	ENSNBRG00000000519	polr1a	100	65.623	Neolamprologus_brichardi
ENSMOCG00000000122	Polr1a	100	85.418	ENSNLEG00000002264	POLR1A	100	85.303	Nomascus_leucogenys
ENSMOCG00000000122	Polr1a	76	93.701	ENSMEUG00000011665	-	75	93.701	Notamacropus_eugenii
ENSMOCG00000000122	Polr1a	99	81.567	ENSOPRG00000008269	POLR1A	100	81.674	Ochotona_princeps
ENSMOCG00000000122	Polr1a	100	88.850	ENSODEG00000003542	POLR1A	100	88.966	Octodon_degus
ENSMOCG00000000122	Polr1a	100	66.241	ENSONIG00000015895	polr1a	100	66.009	Oreochromis_niloticus
ENSMOCG00000000122	Polr1a	100	89.199	ENSOCUG00000010138	POLR1A	100	89.315	Oryctolagus_cuniculus
ENSMOCG00000000122	Polr1a	100	65.487	ENSORLG00000008753	polr1a	99	64.887	Oryzias_latipes
ENSMOCG00000000122	Polr1a	100	64.079	ENSORLG00020020726	polr1a	99	63.647	Oryzias_latipes_hni
ENSMOCG00000000122	Polr1a	96	74.468	ENSORLG00015016071	polr1a	99	74.444	Oryzias_latipes_hsok
ENSMOCG00000000122	Polr1a	100	88.188	ENSOGAG00000004031	POLR1A	100	87.898	Otolemur_garnettii
ENSMOCG00000000122	Polr1a	100	87.392	ENSOARG00000020601	POLR1A	100	87.102	Ovis_aries
ENSMOCG00000000122	Polr1a	100	87.261	ENSPPAG00000042450	POLR1A	100	86.740	Pan_paniscus
ENSMOCG00000000122	Polr1a	100	87.362	ENSPPRG00000006702	POLR1A	100	87.710	Panthera_pardus
ENSMOCG00000000122	Polr1a	100	86.886	ENSPTIG00000018783	POLR1A	100	87.233	Panthera_tigris_altaica
ENSMOCG00000000122	Polr1a	100	87.087	ENSPTRG00000012147	POLR1A	100	86.682	Pan_troglodytes
ENSMOCG00000000122	Polr1a	100	87.782	ENSPANG00000025908	POLR1A	100	87.319	Papio_anubis
ENSMOCG00000000122	Polr1a	94	75.694	ENSPKIG00000005468	polr1a	99	75.694	Paramormyrops_kingsleyae
ENSMOCG00000000122	Polr1a	63	69.936	ENSPSIG00000009321	-	99	71.455	Pelodiscus_sinensis
ENSMOCG00000000122	Polr1a	57	67.903	ENSPMGG00000009718	polr1a	95	67.903	Periophthalmus_magnuspinnatus
ENSMOCG00000000122	Polr1a	100	96.100	ENSPEMG00000022224	Polr1a	100	96.158	Peromyscus_maniculatus_bairdii
ENSMOCG00000000122	Polr1a	95	79.182	ENSPCIG00000004222	POLR1A	99	79.060	Phascolarctos_cinereus
ENSMOCG00000000122	Polr1a	100	64.907	ENSPFOG00000005025	polr1a	100	65.081	Poecilia_formosa
ENSMOCG00000000122	Polr1a	100	65.273	ENSPLAG00000021389	polr1a	100	65.389	Poecilia_latipinna
ENSMOCG00000000122	Polr1a	100	63.188	ENSPMEG00000006463	polr1a	100	63.478	Poecilia_mexicana
ENSMOCG00000000122	Polr1a	100	65.353	ENSPREG00000002389	polr1a	100	65.469	Poecilia_reticulata
ENSMOCG00000000122	Polr1a	100	87.145	ENSPPYG00000012217	POLR1A	100	86.450	Pongo_abelii
ENSMOCG00000000122	Polr1a	92	88.000	ENSPCAG00000011582	POLR1A	92	88.000	Procavia_capensis
ENSMOCG00000000122	Polr1a	100	88.079	ENSPCOG00000026987	POLR1A	100	88.252	Propithecus_coquereli
ENSMOCG00000000122	Polr1a	95	84.989	ENSPVAG00000012674	POLR1A	95	85.136	Pteropus_vampyrus
ENSMOCG00000000122	Polr1a	100	65.338	ENSPNYG00000000026	polr1a	100	65.565	Pundamilia_nyererei
ENSMOCG00000000122	Polr1a	100	67.963	ENSPNAG00000019223	polr1a	100	68.000	Pygocentrus_nattereri
ENSMOCG00000000122	Polr1a	100	94.467	ENSRNOG00000009545	Polr1a	100	94.584	Rattus_norvegicus
ENSMOCG00000000122	Polr1a	100	86.798	ENSRBIG00000028335	POLR1A	100	86.856	Rhinopithecus_bieti
ENSMOCG00000000122	Polr1a	100	86.740	ENSRROG00000031473	POLR1A	100	86.798	Rhinopithecus_roxellana
ENSMOCG00000000122	Polr1a	99	37.238	YOR341W	RPA190	99	37.146	Saccharomyces_cerevisiae
ENSMOCG00000000122	Polr1a	100	86.219	ENSSBOG00000030262	POLR1A	100	86.335	Saimiri_boliviensis_boliviensis
ENSMOCG00000000122	Polr1a	100	73.815	ENSSHAG00000014739	POLR1A	100	73.626	Sarcophilus_harrisii
ENSMOCG00000000122	Polr1a	100	67.770	ENSSFOG00015019716	polr1a	100	67.596	Scleropages_formosus
ENSMOCG00000000122	Polr1a	100	65.499	ENSSMAG00000014342	polr1a	100	65.110	Scophthalmus_maximus
ENSMOCG00000000122	Polr1a	100	67.072	ENSSDUG00000014631	polr1a	100	66.763	Seriola_dumerili
ENSMOCG00000000122	Polr1a	100	65.096	ENSSLDG00000024095	polr1a	100	64.843	Seriola_lalandi_dorsalis
ENSMOCG00000000122	Polr1a	76	96.809	ENSSARG00000003136	-	74	96.809	Sorex_araneus
ENSMOCG00000000122	Polr1a	92	82.171	ENSSPUG00000004215	POLR1A	94	82.171	Sphenodon_punctatus
ENSMOCG00000000122	Polr1a	67	72.426	ENSSPAG00000016341	polr1a	95	72.426	Stegastes_partitus
ENSMOCG00000000122	Polr1a	84	88.757	ENSSSCG00000008226	POLR1A	99	88.655	Sus_scrofa
ENSMOCG00000000122	Polr1a	99	70.814	ENSTGUG00000010704	POLR1A	100	70.873	Taeniopygia_guttata
ENSMOCG00000000122	Polr1a	100	63.825	ENSTRUG00000002210	polr1a	99	63.689	Takifugu_rubripes
ENSMOCG00000000122	Polr1a	100	59.746	ENSTNIG00000010116	polr1a	100	59.689	Tetraodon_nigroviridis
ENSMOCG00000000122	Polr1a	71	100.000	ENSTBEG00000008646	POLR1A	70	100.000	Tupaia_belangeri
ENSMOCG00000000122	Polr1a	100	83.826	ENSTTRG00000008597	POLR1A	100	83.469	Tursiops_truncatus
ENSMOCG00000000122	Polr1a	69	86.844	ENSUAMG00000012158	-	96	86.739	Ursus_americanus
ENSMOCG00000000122	Polr1a	100	86.783	ENSUMAG00000006700	POLR1A	100	86.709	Ursus_maritimus
ENSMOCG00000000122	Polr1a	100	87.529	ENSVVUG00000001245	POLR1A	100	87.703	Vulpes_vulpes
ENSMOCG00000000122	Polr1a	100	68.009	ENSXETG00000001952	polr1a	100	69.644	Xenopus_tropicalis
ENSMOCG00000000122	Polr1a	100	65.023	ENSXMAG00000004032	polr1a	100	65.087	Xiphophorus_maculatus