EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000000550 (Gene tree)
Gene ID: -
Gene Symbol: Upf3a
Alias: 2600001C03Rik|4930546M19Rik|RENT3A|UPF3
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 16092 bases
Position: chrJH996437.1:4488636-4504727
Accession: 101989137
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000000695	Smg4_UPF3	PF03467.15	1.1e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000000726	-	1068	XM_005366249	ENSMOCP00000000695	355 (aa)	XP_005366306	-

Gene Model

Click here to download ENSMOCG00000000550's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000000550's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000000550	Upf3a	91	75.522	ENSG00000169062	UPF3A	99	74.038	Homo_sapiens
ENSMOCG00000000550	Upf3a	57	69.307	ENSAPOG00000013484	upf3a	58	67.870	Acanthochromis_polyacanthus
ENSMOCG00000000550	Upf3a	79	78.947	ENSAMEG00000004259	UPF3A	62	78.947	Ailuropoda_melanoleuca
ENSMOCG00000000550	Upf3a	57	69.307	ENSACIG00000020468	upf3a	79	72.650	Amphilophus_citrinellus
ENSMOCG00000000550	Upf3a	57	68.812	ENSAOCG00000020784	upf3a	54	72.000	Amphiprion_ocellaris
ENSMOCG00000000550	Upf3a	50	62.500	ENSAOCG00000000706	upf3b	54	60.400	Amphiprion_ocellaris
ENSMOCG00000000550	Upf3a	57	68.812	ENSAPEG00000003519	upf3a	54	72.000	Amphiprion_percula
ENSMOCG00000000550	Upf3a	57	68.812	ENSATEG00000005843	upf3a	58	68.592	Anabas_testudineus
ENSMOCG00000000550	Upf3a	65	79.741	ENSACAG00000001540	UPF3A	56	79.741	Anolis_carolinensis
ENSMOCG00000000550	Upf3a	91	73.433	ENSANAG00000021713	UPF3A	70	74.030	Aotus_nancymaae
ENSMOCG00000000550	Upf3a	57	69.802	ENSACLG00000026274	upf3a	56	68.231	Astatotilapia_calliptera
ENSMOCG00000000550	Upf3a	50	73.034	ENSAMXG00000002608	upf3a	58	69.925	Astyanax_mexicanus
ENSMOCG00000000550	Upf3a	59	80.383	ENSBTAG00000047365	-	95	81.429	Bos_taurus
ENSMOCG00000000550	Upf3a	82	77.211	ENSCJAG00000019102	UPF3A	71	74.925	Callithrix_jacchus
ENSMOCG00000000550	Upf3a	87	79.553	ENSCAFG00000006504	UPF3A	67	79.553	Canis_familiaris
ENSMOCG00000000550	Upf3a	87	80.192	ENSCAFG00020014268	UPF3A	65	80.192	Canis_lupus_dingo
ENSMOCG00000000550	Upf3a	88	76.190	ENSCHIG00000008682	UPF3A	63	76.899	Capra_hircus
ENSMOCG00000000550	Upf3a	57	79.412	ENSTSYG00000001918	UPF3A	55	79.412	Carlito_syrichta
ENSMOCG00000000550	Upf3a	88	76.997	ENSCPOG00000006824	UPF3A	73	76.997	Cavia_porcellus
ENSMOCG00000000550	Upf3a	88	78.025	ENSCCAG00000018406	UPF3A	71	75.522	Cebus_capucinus
ENSMOCG00000000550	Upf3a	57	47.264	ENSCCAG00000029813	-	52	57.595	Cebus_capucinus
ENSMOCG00000000550	Upf3a	89	78.370	ENSCATG00000029733	UPF3A	68	79.245	Cercocebus_atys
ENSMOCG00000000550	Upf3a	89	77.640	ENSCSAG00000017388	UPF3A	68	78.505	Chlorocebus_sabaeus
ENSMOCG00000000550	Upf3a	50	49.721	ENSCING00000008396	-	93	54.730	Ciona_intestinalis
ENSMOCG00000000550	Upf3a	92	90.462	ENSCGRG00001017387	Upf3a	77	90.462	Cricetulus_griseus_chok1gshd
ENSMOCG00000000550	Upf3a	92	89.846	ENSCGRG00000001468	Upf3a	77	89.846	Cricetulus_griseus_crigri
ENSMOCG00000000550	Upf3a	56	70.352	ENSCSEG00000005106	upf3a	54	73.200	Cynoglossus_semilaevis
ENSMOCG00000000550	Upf3a	50	73.446	ENSCVAG00000022333	upf3a	55	70.703	Cyprinodon_variegatus
ENSMOCG00000000550	Upf3a	84	75.161	ENSDNOG00000034391	UPF3A	75	74.242	Dasypus_novemcinctus
ENSMOCG00000000550	Upf3a	83	67.450	ENSETEG00000010110	UPF3A	65	67.197	Echinops_telfairi
ENSMOCG00000000550	Upf3a	90	76.506	ENSEASG00005021884	UPF3A	70	76.205	Equus_asinus_asinus
ENSMOCG00000000550	Upf3a	85	76.038	ENSECAG00000017141	UPF3A	70	75.602	Equus_caballus
ENSMOCG00000000550	Upf3a	58	68.932	ENSELUG00000011050	upf3a	59	69.395	Esox_lucius
ENSMOCG00000000550	Upf3a	83	78.114	ENSFCAG00000014602	UPF3A	66	78.481	Felis_catus
ENSMOCG00000000550	Upf3a	60	78.140	ENSGMOG00000019615	upf3a	66	78.140	Gadus_morhua
ENSMOCG00000000550	Upf3a	67	59.839	ENSGMOG00000001621	upf3b	52	59.839	Gadus_morhua
ENSMOCG00000000550	Upf3a	51	72.581	ENSGALG00000016815	-	99	69.767	Gallus_gallus
ENSMOCG00000000550	Upf3a	66	60.569	ENSGACG00000017435	upf3b	60	62.195	Gasterosteus_aculeatus
ENSMOCG00000000550	Upf3a	91	75.821	ENSGGOG00000015428	UPF3A	70	76.418	Gorilla_gorilla
ENSMOCG00000000550	Upf3a	89	56.289	ENSGGOG00000043074	-	64	55.031	Gorilla_gorilla
ENSMOCG00000000550	Upf3a	77	61.837	ENSGGOG00000041219	-	56	64.015	Gorilla_gorilla
ENSMOCG00000000550	Upf3a	57	69.802	ENSHBUG00000011325	upf3a	58	67.870	Haplochromis_burtoni
ENSMOCG00000000550	Upf3a	88	77.564	ENSHGLG00000001544	UPF3A	75	77.564	Heterocephalus_glaber_female
ENSMOCG00000000550	Upf3a	88	77.564	ENSHGLG00100013244	UPF3A	75	77.564	Heterocephalus_glaber_male
ENSMOCG00000000550	Upf3a	67	60.976	ENSHCOG00000017004	upf3b	53	60.976	Hippocampus_comes
ENSMOCG00000000550	Upf3a	50	73.034	ENSIPUG00000023450	upf3a	55	71.937	Ictalurus_punctatus
ENSMOCG00000000550	Upf3a	66	61.134	ENSIPUG00000019249	upf3b	58	60.784	Ictalurus_punctatus
ENSMOCG00000000550	Upf3a	63	78.761	ENSSTOG00000030282	-	88	83.810	Ictidomys_tridecemlineatus
ENSMOCG00000000550	Upf3a	59	86.603	ENSJJAG00000018099	-	98	87.019	Jaculus_jaculus
ENSMOCG00000000550	Upf3a	56	69.849	ENSKMAG00000004381	upf3a	58	67.870	Kryptolebias_marmoratus
ENSMOCG00000000550	Upf3a	67	59.200	ENSLBEG00000028689	upf3b	54	59.200	Labrus_bergylta
ENSMOCG00000000550	Upf3a	50	74.576	ENSLBEG00000021570	upf3a	53	61.446	Labrus_bergylta
ENSMOCG00000000550	Upf3a	67	63.306	ENSLOCG00000015238	upf3b	57	62.891	Lepisosteus_oculatus
ENSMOCG00000000550	Upf3a	70	66.403	ENSLAFG00000023358	UPF3A	60	64.822	Loxodonta_africana
ENSMOCG00000000550	Upf3a	89	73.668	ENSMFAG00000045016	UPF3A	67	72.615	Macaca_fascicularis
ENSMOCG00000000550	Upf3a	50	55.376	ENSMFAG00000045275	-	83	54.335	Macaca_fascicularis
ENSMOCG00000000550	Upf3a	52	52.821	ENSMMUG00000046682	-	83	53.846	Macaca_mulatta
ENSMOCG00000000550	Upf3a	89	74.214	ENSMMUG00000007449	UPF3A	67	75.079	Macaca_mulatta
ENSMOCG00000000550	Upf3a	50	54.839	ENSMNEG00000040898	-	83	53.757	Macaca_nemestrina
ENSMOCG00000000550	Upf3a	74	77.536	ENSMNEG00000036402	UPF3A	57	78.545	Macaca_nemestrina
ENSMOCG00000000550	Upf3a	70	81.275	ENSMLEG00000014726	UPF3A	59	81.600	Mandrillus_leucophaeus
ENSMOCG00000000550	Upf3a	57	70.098	ENSMAMG00000018364	upf3a	56	68.231	Mastacembelus_armatus
ENSMOCG00000000550	Upf3a	57	69.802	ENSMZEG00005021571	upf3a	56	68.231	Maylandia_zebra
ENSMOCG00000000550	Upf3a	65	77.826	ENSMGAG00000014837	UPF3A	57	77.826	Meleagris_gallopavo
ENSMOCG00000000550	Upf3a	51	73.224	ENSMMOG00000019751	upf3a	54	70.155	Mola_mola
ENSMOCG00000000550	Upf3a	66	82.278	ENSMODG00000003159	UPF3A	56	82.278	Monodelphis_domestica
ENSMOCG00000000550	Upf3a	98	78.933	MGP_CAROLIEiJ_G0030848	Upf3a	84	78.933	Mus_caroli
ENSMOCG00000000550	Upf3a	98	81.461	ENSMUSG00000038398	Upf3a	84	81.461	Mus_musculus
ENSMOCG00000000550	Upf3a	98	80.056	MGP_PahariEiJ_G0021311	Upf3a	84	80.056	Mus_pahari
ENSMOCG00000000550	Upf3a	98	81.461	MGP_SPRETEiJ_G0031958	Upf3a	84	81.461	Mus_spretus
ENSMOCG00000000550	Upf3a	87	78.594	ENSMPUG00000009139	UPF3A	65	78.594	Mustela_putorius_furo
ENSMOCG00000000550	Upf3a	70	79.762	ENSMLUG00000015905	UPF3A	60	79.762	Myotis_lucifugus
ENSMOCG00000000550	Upf3a	92	84.615	ENSNGAG00000019314	Upf3a	77	84.615	Nannospalax_galili
ENSMOCG00000000550	Upf3a	57	69.802	ENSNBRG00000000828	upf3a	58	67.870	Neolamprologus_brichardi
ENSMOCG00000000550	Upf3a	91	76.190	ENSNLEG00000007563	UPF3A	70	76.488	Nomascus_leucogenys
ENSMOCG00000000550	Upf3a	50	56.497	ENSNLEG00000027516	-	78	55.488	Nomascus_leucogenys
ENSMOCG00000000550	Upf3a	61	78.440	ENSODEG00000009176	-	83	80.569	Octodon_degus
ENSMOCG00000000550	Upf3a	59	52.093	ENSODEG00000007164	-	70	55.090	Octodon_degus
ENSMOCG00000000550	Upf3a	57	68.627	ENSONIG00000006817	upf3a	58	67.025	Oreochromis_niloticus
ENSMOCG00000000550	Upf3a	68	66.122	ENSOANG00000006985	-	60	66.942	Ornithorhynchus_anatinus
ENSMOCG00000000550	Upf3a	61	56.195	ENSORLG00000001026	upf3b	63	51.815	Oryzias_latipes
ENSMOCG00000000550	Upf3a	69	72.874	ENSORLG00000010911	upf3a	53	72.874	Oryzias_latipes
ENSMOCG00000000550	Upf3a	69	60.729	ENSORLG00020014317	upf3a	53	71.138	Oryzias_latipes_hni
ENSMOCG00000000550	Upf3a	50	74.576	ENSOMEG00000014425	upf3a	55	71.765	Oryzias_melastigma
ENSMOCG00000000550	Upf3a	91	75.224	ENSOGAG00000004788	UPF3A	81	75.224	Otolemur_garnettii
ENSMOCG00000000550	Upf3a	86	72.756	ENSOARG00000009004	UPF3A	57	79.259	Ovis_aries
ENSMOCG00000000550	Upf3a	91	75.749	ENSPPAG00000042267	UPF3A	70	76.347	Pan_paniscus
ENSMOCG00000000550	Upf3a	83	78.451	ENSPPRG00000025062	UPF3A	66	78.797	Panthera_pardus
ENSMOCG00000000550	Upf3a	78	59.649	ENSPTRG00000051640	-	61	59.649	Pan_troglodytes
ENSMOCG00000000550	Upf3a	72	61.654	ENSPTRG00000041187	-	57	61.423	Pan_troglodytes
ENSMOCG00000000550	Upf3a	72	61.089	ENSPTRG00000041835	-	55	61.089	Pan_troglodytes
ENSMOCG00000000550	Upf3a	91	76.119	ENSPTRG00000006073	UPF3A	70	76.716	Pan_troglodytes
ENSMOCG00000000550	Upf3a	52	53.333	ENSPANG00000029350	-	88	52.198	Papio_anubis
ENSMOCG00000000550	Upf3a	89	78.997	ENSPANG00000004346	UPF3A	68	79.245	Papio_anubis
ENSMOCG00000000550	Upf3a	57	68.159	ENSPKIG00000004422	upf3a	55	71.255	Paramormyrops_kingsleyae
ENSMOCG00000000550	Upf3a	67	61.446	ENSPKIG00000019226	upf3b	75	68.376	Paramormyrops_kingsleyae
ENSMOCG00000000550	Upf3a	73	72.761	ENSPSIG00000007468	UPF3A	66	72.761	Pelodiscus_sinensis
ENSMOCG00000000550	Upf3a	59	66.986	ENSPMGG00000012696	upf3a	53	70.428	Periophthalmus_magnuspinnatus
ENSMOCG00000000550	Upf3a	92	92.923	ENSPEMG00000019968	-	77	92.638	Peromyscus_maniculatus_bairdii
ENSMOCG00000000550	Upf3a	69	70.732	ENSPCIG00000019590	-	90	72.300	Phascolarctos_cinereus
ENSMOCG00000000550	Upf3a	51	74.033	ENSPLAG00000011960	upf3a	58	72.000	Poecilia_latipinna
ENSMOCG00000000550	Upf3a	88	78.344	ENSPPYG00000005536	UPF3A	66	78.981	Pongo_abelii
ENSMOCG00000000550	Upf3a	88	65.625	ENSPCAG00000013124	UPF3A	66	66.250	Procavia_capensis
ENSMOCG00000000550	Upf3a	88	75.000	ENSPVAG00000005656	UPF3A	66	75.000	Pteropus_vampyrus
ENSMOCG00000000550	Upf3a	57	69.802	ENSPNYG00000011289	upf3a	56	68.231	Pundamilia_nyererei
ENSMOCG00000000550	Upf3a	56	68.342	ENSPNAG00000019532	upf3a	58	68.978	Pygocentrus_nattereri
ENSMOCG00000000550	Upf3a	62	63.470	ENSPNAG00000021528	upf3b	56	62.500	Pygocentrus_nattereri
ENSMOCG00000000550	Upf3a	92	87.692	ENSRNOG00000017397	Upf3a	80	87.692	Rattus_norvegicus
ENSMOCG00000000550	Upf3a	74	80.916	ENSRBIG00000034007	UPF3A	62	79.137	Rhinopithecus_bieti
ENSMOCG00000000550	Upf3a	70	82.000	ENSRROG00000012212	UPF3A	53	82.329	Rhinopithecus_roxellana
ENSMOCG00000000550	Upf3a	88	66.561	ENSSBOG00000029989	UPF3A	68	64.776	Saimiri_boliviensis_boliviensis
ENSMOCG00000000550	Upf3a	69	79.592	ENSSHAG00000009895	UPF3A	58	79.592	Sarcophilus_harrisii
ENSMOCG00000000550	Upf3a	68	63.386	ENSSFOG00015005614	upf3b	55	63.386	Scleropages_formosus
ENSMOCG00000000550	Upf3a	57	67.164	ENSSFOG00015021851	upf3a	57	69.960	Scleropages_formosus
ENSMOCG00000000550	Upf3a	57	67.822	ENSSMAG00000003858	upf3a	79	72.650	Scophthalmus_maximus
ENSMOCG00000000550	Upf3a	72	59.774	ENSSMAG00000012913	upf3b	54	64.024	Scophthalmus_maximus
ENSMOCG00000000550	Upf3a	57	68.317	ENSSDUG00000009680	upf3a	72	62.992	Seriola_dumerili
ENSMOCG00000000550	Upf3a	56	69.347	ENSSLDG00000009700	upf3a	54	71.825	Seriola_lalandi_dorsalis
ENSMOCG00000000550	Upf3a	77	62.044	ENSSARG00000007262	UPF3A	62	57.664	Sorex_araneus
ENSMOCG00000000550	Upf3a	55	68.878	ENSSPAG00000007938	upf3a	74	78.261	Stegastes_partitus
ENSMOCG00000000550	Upf3a	66	62.295	ENSSPAG00000009989	upf3b	54	62.400	Stegastes_partitus
ENSMOCG00000000550	Upf3a	88	75.079	ENSSSCG00000024679	UPF3A	77	75.000	Sus_scrofa
ENSMOCG00000000550	Upf3a	69	80.972	ENSTGUG00000009493	UPF3A	63	80.972	Taeniopygia_guttata
ENSMOCG00000000550	Upf3a	57	66.337	ENSTRUG00000012730	upf3a	58	66.065	Takifugu_rubripes
ENSMOCG00000000550	Upf3a	57	67.822	ENSTNIG00000014973	upf3a	62	59.600	Tetraodon_nigroviridis
ENSMOCG00000000550	Upf3a	58	68.116	ENSTBEG00000017186	-	64	68.966	Tupaia_belangeri
ENSMOCG00000000550	Upf3a	88	64.038	ENSTTRG00000015414	UPF3A	66	64.038	Tursiops_truncatus
ENSMOCG00000000550	Upf3a	71	79.688	ENSVPAG00000003525	UPF3A	64	79.688	Vicugna_pacos
ENSMOCG00000000550	Upf3a	87	77.316	ENSVVUG00000013538	UPF3A	63	78.344	Vulpes_vulpes
ENSMOCG00000000550	Upf3a	72	62.403	ENSXETG00000002572	upf3a	61	62.403	Xenopus_tropicalis