EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000000948 (Gene tree)
Gene ID: 102000372
Gene Symbol: -
Alias: -
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 40218 bases
Position: chr1:58266066-58306283
Accession: 102000372
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000001248	SRP54	PF00448.22	1.3e-78	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000001285	-	2122	XM_013347114	ENSMOCP00000001248	440 (aa)	XP_013202568	-

Gene Model

Click here to download ENSMOCG00000000948's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000000948's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000000948	-	100	99.773	ENSG00000100883	SRP54	100	99.773	Homo_sapiens
ENSMOCG00000000948	-	100	95.682	ENSAPOG00000011314	srp54	87	95.682	Acanthochromis_polyacanthus
ENSMOCG00000000948	-	100	99.773	ENSAMEG00000015544	SRP54	87	99.773	Ailuropoda_melanoleuca
ENSMOCG00000000948	-	88	94.286	ENSACIG00000022831	srp54	83	94.286	Amphilophus_citrinellus
ENSMOCG00000000948	-	100	95.682	ENSAOCG00000019401	srp54	87	95.682	Amphiprion_ocellaris
ENSMOCG00000000948	-	100	95.682	ENSAPEG00000001977	srp54	93	95.682	Amphiprion_percula
ENSMOCG00000000948	-	100	96.136	ENSATEG00000013877	srp54	87	96.136	Anabas_testudineus
ENSMOCG00000000948	-	93	98.293	ENSAPLG00000010125	SRP54	82	98.293	Anas_platyrhynchos
ENSMOCG00000000948	-	74	81.873	ENSACAG00000001124	-	100	81.873	Anolis_carolinensis
ENSMOCG00000000948	-	100	98.182	ENSACAG00000002103	-	87	98.182	Anolis_carolinensis
ENSMOCG00000000948	-	99	95.392	ENSACAG00000010631	-	100	95.392	Anolis_carolinensis
ENSMOCG00000000948	-	100	99.773	ENSANAG00000022133	SRP54	87	99.773	Aotus_nancymaae
ENSMOCG00000000948	-	100	95.909	ENSACLG00000015866	srp54	87	95.909	Astatotilapia_calliptera
ENSMOCG00000000948	-	100	95.682	ENSAMXG00000032669	SRP54	87	95.682	Astyanax_mexicanus
ENSMOCG00000000948	-	100	99.773	ENSBTAG00000019085	SRP54	87	99.773	Bos_taurus
ENSMOCG00000000948	-	98	72.811	WBGene00009012	F21D5.7	87	72.811	Caenorhabditis_elegans
ENSMOCG00000000948	-	100	99.773	ENSCJAG00000006581	SRP54	97	99.773	Callithrix_jacchus
ENSMOCG00000000948	-	100	99.773	ENSCAFG00000013331	SRP54	87	99.773	Canis_familiaris
ENSMOCG00000000948	-	100	99.773	ENSCAFG00020023427	SRP54	87	99.773	Canis_lupus_dingo
ENSMOCG00000000948	-	100	99.773	ENSCHIG00000026345	SRP54	87	99.773	Capra_hircus
ENSMOCG00000000948	-	94	86.473	ENSTSYG00000035333	-	80	86.473	Carlito_syrichta
ENSMOCG00000000948	-	100	99.545	ENSTSYG00000002680	-	97	99.545	Carlito_syrichta
ENSMOCG00000000948	-	88	61.728	ENSCAPG00000008780	SRP54	85	61.728	Cavia_aperea
ENSMOCG00000000948	-	100	99.545	ENSCPOG00000003691	SRP54	87	99.545	Cavia_porcellus
ENSMOCG00000000948	-	95	99.761	ENSCCAG00000024179	SRP54	100	99.761	Cebus_capucinus
ENSMOCG00000000948	-	100	99.773	ENSCATG00000034083	SRP54	97	99.773	Cercocebus_atys
ENSMOCG00000000948	-	100	99.773	ENSCLAG00000015076	SRP54	87	99.773	Chinchilla_lanigera
ENSMOCG00000000948	-	100	99.773	ENSCSAG00000015575	SRP54	87	99.773	Chlorocebus_sabaeus
ENSMOCG00000000948	-	95	85.851	ENSCHOG00000008986	SRP54	86	85.851	Choloepus_hoffmanni
ENSMOCG00000000948	-	100	98.864	ENSCPBG00000026195	SRP54	87	98.864	Chrysemys_picta_bellii
ENSMOCG00000000948	-	100	82.045	ENSCING00000007380	-	87	82.045	Ciona_intestinalis
ENSMOCG00000000948	-	100	99.773	ENSCANG00000028532	SRP54	97	99.773	Colobus_angolensis_palliatus
ENSMOCG00000000948	-	100	99.773	ENSCGRG00001009525	-	87	99.773	Cricetulus_griseus_chok1gshd
ENSMOCG00000000948	-	73	99.688	ENSCGRG00000009453	-	74	99.688	Cricetulus_griseus_crigri
ENSMOCG00000000948	-	100	94.773	ENSCSEG00000012392	srp54	87	94.773	Cynoglossus_semilaevis
ENSMOCG00000000948	-	100	95.682	ENSCVAG00000010395	srp54	87	95.682	Cyprinodon_variegatus
ENSMOCG00000000948	-	100	96.136	ENSDARG00000098367	srp54	87	96.136	Danio_rerio
ENSMOCG00000000948	-	100	99.773	ENSDNOG00000032525	SRP54	87	99.773	Dasypus_novemcinctus
ENSMOCG00000000948	-	87	82.292	ENSDORG00000005159	-	82	82.292	Dipodomys_ordii
ENSMOCG00000000948	-	96	77.672	FBgn0010747	Srp54k	85	77.189	Drosophila_melanogaster
ENSMOCG00000000948	-	95	58.373	ENSETEG00000012102	-	99	58.373	Echinops_telfairi
ENSMOCG00000000948	-	100	99.318	ENSETEG00000016307	-	87	99.318	Echinops_telfairi
ENSMOCG00000000948	-	100	87.500	ENSEBUG00000009437	-	87	87.500	Eptatretus_burgeri
ENSMOCG00000000948	-	100	99.773	ENSEASG00005002057	SRP54	87	99.773	Equus_asinus_asinus
ENSMOCG00000000948	-	99	99.539	ENSECAG00000018042	SRP54	86	99.539	Equus_caballus
ENSMOCG00000000948	-	100	88.182	ENSEEUG00000001511	SRP54	87	88.182	Erinaceus_europaeus
ENSMOCG00000000948	-	100	95.000	ENSELUG00000003395	srp54	87	95.000	Esox_lucius
ENSMOCG00000000948	-	100	99.545	ENSFCAG00000032033	SRP54	87	99.545	Felis_catus
ENSMOCG00000000948	-	100	98.409	ENSFALG00000005995	SRP54	87	98.409	Ficedula_albicollis
ENSMOCG00000000948	-	100	99.773	ENSFDAG00000016767	SRP54	87	99.773	Fukomys_damarensis
ENSMOCG00000000948	-	100	95.455	ENSFHEG00000004263	srp54	87	95.455	Fundulus_heteroclitus
ENSMOCG00000000948	-	100	89.545	ENSGMOG00000011391	srp54	92	89.545	Gadus_morhua
ENSMOCG00000000948	-	100	98.409	ENSGALG00000023135	SRP54	87	98.409	Gallus_gallus
ENSMOCG00000000948	-	100	95.909	ENSGAFG00000011586	srp54	87	95.909	Gambusia_affinis
ENSMOCG00000000948	-	100	95.455	ENSGACG00000004181	srp54	87	95.455	Gasterosteus_aculeatus
ENSMOCG00000000948	-	100	98.864	ENSGAGG00000014766	SRP54	87	98.864	Gopherus_agassizii
ENSMOCG00000000948	-	100	99.773	ENSGGOG00000002926	SRP54	97	99.773	Gorilla_gorilla
ENSMOCG00000000948	-	100	95.909	ENSHBUG00000005678	srp54	87	95.909	Haplochromis_burtoni
ENSMOCG00000000948	-	100	99.773	ENSHGLG00000002850	SRP54	87	99.773	Heterocephalus_glaber_female
ENSMOCG00000000948	-	100	70.068	ENSHGLG00100007281	-	88	70.068	Heterocephalus_glaber_male
ENSMOCG00000000948	-	100	99.773	ENSHGLG00100005263	SRP54	87	99.773	Heterocephalus_glaber_male
ENSMOCG00000000948	-	100	94.318	ENSHCOG00000021127	srp54	87	94.318	Hippocampus_comes
ENSMOCG00000000948	-	100	95.227	ENSIPUG00000001420	srp54	87	95.227	Ictalurus_punctatus
ENSMOCG00000000948	-	100	99.773	ENSSTOG00000016023	SRP54	87	99.773	Ictidomys_tridecemlineatus
ENSMOCG00000000948	-	100	93.864	ENSJJAG00000013417	-	87	93.864	Jaculus_jaculus
ENSMOCG00000000948	-	100	76.364	ENSJJAG00000016404	-	100	76.364	Jaculus_jaculus
ENSMOCG00000000948	-	100	95.455	ENSKMAG00000007707	srp54	87	95.455	Kryptolebias_marmoratus
ENSMOCG00000000948	-	100	95.682	ENSLBEG00000018690	srp54	87	95.682	Labrus_bergylta
ENSMOCG00000000948	-	100	95.682	ENSLBEG00000021122	srp54	87	95.682	Labrus_bergylta
ENSMOCG00000000948	-	100	95.682	ENSLACG00000017890	SRP54	87	95.682	Latimeria_chalumnae
ENSMOCG00000000948	-	100	96.818	ENSLOCG00000009440	srp54	87	96.818	Lepisosteus_oculatus
ENSMOCG00000000948	-	100	99.773	ENSLAFG00000012007	SRP54	87	99.773	Loxodonta_africana
ENSMOCG00000000948	-	100	99.773	ENSMFAG00000044371	SRP54	97	99.773	Macaca_fascicularis
ENSMOCG00000000948	-	100	99.773	ENSMMUG00000015073	FAM177A1	97	99.773	Macaca_mulatta
ENSMOCG00000000948	-	100	99.773	ENSMNEG00000006947	SRP54	97	99.773	Macaca_nemestrina
ENSMOCG00000000948	-	100	99.773	ENSMLEG00000042251	SRP54	97	99.773	Mandrillus_leucophaeus
ENSMOCG00000000948	-	100	95.909	ENSMAMG00000004803	srp54	87	95.909	Mastacembelus_armatus
ENSMOCG00000000948	-	100	95.909	ENSMZEG00005027528	srp54	87	95.909	Maylandia_zebra
ENSMOCG00000000948	-	97	97.412	ENSMGAG00000012481	SRP54	84	97.412	Meleagris_gallopavo
ENSMOCG00000000948	-	100	100.000	ENSMAUG00000014447	-	87	100.000	Mesocricetus_auratus
ENSMOCG00000000948	-	100	99.773	ENSMICG00000010270	SRP54	87	99.773	Microcebus_murinus
ENSMOCG00000000948	-	87	93.734	ENSMMOG00000020303	srp54	84	93.734	Mola_mola
ENSMOCG00000000948	-	100	99.545	ENSMODG00000012925	-	87	99.545	Monodelphis_domestica
ENSMOCG00000000948	-	100	99.545	ENSMODG00000023150	-	87	99.545	Monodelphis_domestica
ENSMOCG00000000948	-	86	95.515	ENSMALG00000009163	srp54	84	95.515	Monopterus_albus
ENSMOCG00000000948	-	100	100.000	MGP_CAROLIEiJ_G0017754	-	87	100.000	Mus_caroli
ENSMOCG00000000948	-	100	100.000	ENSMUSG00000073079	Srp54a	87	100.000	Mus_musculus
ENSMOCG00000000948	-	100	100.000	ENSMUSG00000112449	Srp54b	87	100.000	Mus_musculus
ENSMOCG00000000948	-	100	99.091	ENSMUSG00000079108	Srp54c	87	99.091	Mus_musculus
ENSMOCG00000000948	-	100	100.000	MGP_PahariEiJ_G0029510	-	87	100.000	Mus_pahari
ENSMOCG00000000948	-	100	99.773	ENSMPUG00000016302	SRP54	87	99.773	Mustela_putorius_furo
ENSMOCG00000000948	-	100	99.091	ENSMLUG00000008958	SRP54	87	99.091	Myotis_lucifugus
ENSMOCG00000000948	-	100	88.409	ENSNGAG00000019806	-	86	88.409	Nannospalax_galili
ENSMOCG00000000948	-	100	95.909	ENSNBRG00000006000	srp54	100	95.909	Neolamprologus_brichardi
ENSMOCG00000000948	-	100	99.773	ENSNLEG00000003496	SRP54	97	99.773	Nomascus_leucogenys
ENSMOCG00000000948	-	64	99.643	ENSMEUG00000000138	-	63	99.643	Notamacropus_eugenii
ENSMOCG00000000948	-	100	99.773	ENSODEG00000004865	SRP54	87	99.773	Octodon_degus
ENSMOCG00000000948	-	100	95.909	ENSONIG00000011768	srp54	87	95.909	Oreochromis_niloticus
ENSMOCG00000000948	-	100	99.773	ENSOANG00000014051	SRP54	87	99.773	Ornithorhynchus_anatinus
ENSMOCG00000000948	-	100	99.091	ENSOCUG00000007838	SRP54	87	99.091	Oryctolagus_cuniculus
ENSMOCG00000000948	-	100	95.909	ENSORLG00000010027	srp54	87	95.909	Oryzias_latipes
ENSMOCG00000000948	-	100	95.909	ENSORLG00020001878	srp54	87	95.909	Oryzias_latipes_hni
ENSMOCG00000000948	-	100	95.909	ENSORLG00015021866	srp54	87	95.909	Oryzias_latipes_hsok
ENSMOCG00000000948	-	100	95.682	ENSOMEG00000020952	srp54	87	95.682	Oryzias_melastigma
ENSMOCG00000000948	-	100	99.773	ENSOGAG00000012188	SRP54	87	99.773	Otolemur_garnettii
ENSMOCG00000000948	-	100	99.773	ENSOARG00000007160	SRP54	87	99.773	Ovis_aries
ENSMOCG00000000948	-	100	99.773	ENSPPAG00000017434	SRP54	97	99.773	Pan_paniscus
ENSMOCG00000000948	-	100	98.409	ENSPPRG00000014047	SRP54	97	98.409	Panthera_pardus
ENSMOCG00000000948	-	100	99.545	ENSPTIG00000000744	SRP54	84	99.545	Panthera_tigris_altaica
ENSMOCG00000000948	-	100	99.773	ENSPTRG00000006259	FAM177A1	97	99.773	Pan_troglodytes
ENSMOCG00000000948	-	100	99.773	ENSPANG00000023853	SRP54	97	99.773	Papio_anubis
ENSMOCG00000000948	-	100	95.909	ENSPKIG00000001953	srp54	87	95.909	Paramormyrops_kingsleyae
ENSMOCG00000000948	-	100	98.636	ENSPSIG00000006476	SRP54	87	98.636	Pelodiscus_sinensis
ENSMOCG00000000948	-	90	92.424	ENSPMGG00000004127	srp54	86	92.424	Periophthalmus_magnuspinnatus
ENSMOCG00000000948	-	100	85.227	ENSPEMG00000019634	-	86	85.227	Peromyscus_maniculatus_bairdii
ENSMOCG00000000948	-	100	88.636	ENSPMAG00000006078	-	87	88.636	Petromyzon_marinus
ENSMOCG00000000948	-	100	99.545	ENSPCIG00000016175	SRP54	87	99.545	Phascolarctos_cinereus
ENSMOCG00000000948	-	100	95.909	ENSPFOG00000008870	srp54	87	95.909	Poecilia_formosa
ENSMOCG00000000948	-	100	95.909	ENSPLAG00000009889	srp54	87	95.909	Poecilia_latipinna
ENSMOCG00000000948	-	100	95.909	ENSPMEG00000008601	srp54	87	95.909	Poecilia_mexicana
ENSMOCG00000000948	-	100	95.909	ENSPREG00000004505	srp54	87	95.909	Poecilia_reticulata
ENSMOCG00000000948	-	96	99.291	ENSPPYG00000005739	SRP54	84	99.291	Pongo_abelii
ENSMOCG00000000948	-	100	95.000	ENSPCAG00000006268	SRP54	87	95.000	Procavia_capensis
ENSMOCG00000000948	-	100	97.506	ENSPCOG00000022473	SRP54	87	97.506	Propithecus_coquereli
ENSMOCG00000000948	-	58	100.000	ENSPVAG00000010056	SRP54	66	100.000	Pteropus_vampyrus
ENSMOCG00000000948	-	100	95.909	ENSPNYG00000009717	srp54	87	95.909	Pundamilia_nyererei
ENSMOCG00000000948	-	100	95.909	ENSPNAG00000008544	srp54	87	95.909	Pygocentrus_nattereri
ENSMOCG00000000948	-	100	99.773	ENSRNOG00000032776	Srp54a	87	99.773	Rattus_norvegicus
ENSMOCG00000000948	-	100	99.773	ENSRROG00000041292	SRP54	97	99.773	Rhinopithecus_roxellana
ENSMOCG00000000948	-	82	55.890	YPR088C	SRP54	81	49.776	Saccharomyces_cerevisiae
ENSMOCG00000000948	-	100	99.773	ENSSBOG00000035145	SRP54	93	99.773	Saimiri_boliviensis_boliviensis
ENSMOCG00000000948	-	78	99.708	ENSSHAG00000000671	SRP54	100	99.708	Sarcophilus_harrisii
ENSMOCG00000000948	-	100	96.591	ENSSFOG00015013920	srp54	87	96.591	Scleropages_formosus
ENSMOCG00000000948	-	100	89.362	ENSSMAG00000002441	srp54	88	89.362	Scophthalmus_maximus
ENSMOCG00000000948	-	100	95.455	ENSSDUG00000018586	srp54	87	95.455	Seriola_dumerili
ENSMOCG00000000948	-	100	95.227	ENSSLDG00000010476	srp54	87	95.227	Seriola_lalandi_dorsalis
ENSMOCG00000000948	-	100	99.773	ENSSARG00000002744	SRP54	87	99.773	Sorex_araneus
ENSMOCG00000000948	-	100	98.864	ENSSPUG00000013101	SRP54	87	98.864	Sphenodon_punctatus
ENSMOCG00000000948	-	100	95.682	ENSSPAG00000002354	srp54	87	95.682	Stegastes_partitus
ENSMOCG00000000948	-	100	99.773	ENSSSCG00000001955	SRP54	87	99.773	Sus_scrofa
ENSMOCG00000000948	-	93	98.293	ENSTGUG00000011945	-	82	98.293	Taeniopygia_guttata
ENSMOCG00000000948	-	100	95.000	ENSTRUG00000007057	srp54	87	95.000	Takifugu_rubripes
ENSMOCG00000000948	-	100	94.545	ENSTNIG00000002589	srp54	87	94.545	Tetraodon_nigroviridis
ENSMOCG00000000948	-	100	91.364	ENSTBEG00000011409	SRP54	98	91.364	Tupaia_belangeri
ENSMOCG00000000948	-	100	88.409	ENSTTRG00000000928	SRP54	87	88.409	Tursiops_truncatus
ENSMOCG00000000948	-	100	99.773	ENSUMAG00000011234	SRP54	87	99.773	Ursus_maritimus
ENSMOCG00000000948	-	93	99.512	ENSVPAG00000005668	SRP54	86	99.512	Vicugna_pacos
ENSMOCG00000000948	-	100	99.773	ENSVVUG00000019962	SRP54	87	99.773	Vulpes_vulpes
ENSMOCG00000000948	-	100	80.135	ENSXETG00000012290	srp54	88	80.134	Xenopus_tropicalis
ENSMOCG00000000948	-	86	95.778	ENSXCOG00000004658	srp54	82	95.778	Xiphophorus_couchianus
ENSMOCG00000000948	-	100	95.909	ENSXMAG00000018315	srp54	87	95.909	Xiphophorus_maculatus