EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000002458 (Gene tree)
Gene ID: 101996777
Gene Symbol: Smndc1
Alias: 2410004J23Rik|4933440I19Rik
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 10906 bases
Position: chr8:80722613-80733518
Accession: 101996777
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000003088	TUDOR	PF00567.24	0.00017	1	1
ENSMOCP00000003088	SMN	PF06003.12	5.5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000003299	-	1803	XM_005352470	ENSMOCP00000003088	238 (aa)	XP_005352527	UPI00038C3F67

Gene Model

Click here to download ENSMOCG00000002458's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000002458's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000002458	Smndc1	100	99.160	ENSG00000119953	SMNDC1	100	99.160	Homo_sapiens
ENSMOCG00000002458	Smndc1	100	74.370	ENSAPOG00000021772	smndc1	100	74.370	Acanthochromis_polyacanthus
ENSMOCG00000002458	Smndc1	100	99.580	ENSAMEG00000005251	SMNDC1	100	99.580	Ailuropoda_melanoleuca
ENSMOCG00000002458	Smndc1	100	76.987	ENSACIG00000004819	smndc1	100	76.987	Amphilophus_citrinellus
ENSMOCG00000002458	Smndc1	100	74.370	ENSAOCG00000017869	smndc1	100	74.370	Amphiprion_ocellaris
ENSMOCG00000002458	Smndc1	100	74.370	ENSAPEG00000007752	smndc1	100	74.370	Amphiprion_percula
ENSMOCG00000002458	Smndc1	100	75.630	ENSATEG00000006830	smndc1	100	75.630	Anabas_testudineus
ENSMOCG00000002458	Smndc1	83	95.960	ENSAPLG00000004322	SMNDC1	100	95.960	Anas_platyrhynchos
ENSMOCG00000002458	Smndc1	100	94.538	ENSACAG00000005983	SMNDC1	100	94.538	Anolis_carolinensis
ENSMOCG00000002458	Smndc1	100	99.580	ENSANAG00000032875	SMNDC1	100	99.580	Aotus_nancymaae
ENSMOCG00000002458	Smndc1	100	76.050	ENSACLG00000016360	smndc1	100	76.050	Astatotilapia_calliptera
ENSMOCG00000002458	Smndc1	100	75.630	ENSAMXG00000020310	smndc1	100	75.630	Astyanax_mexicanus
ENSMOCG00000002458	Smndc1	100	99.160	ENSBTAG00000000551	SMNDC1	100	99.160	Bos_taurus
ENSMOCG00000002458	Smndc1	100	99.580	ENSCJAG00000018624	SMNDC1	100	99.580	Callithrix_jacchus
ENSMOCG00000002458	Smndc1	100	99.580	ENSCAFG00000010720	SMNDC1	100	99.580	Canis_familiaris
ENSMOCG00000002458	Smndc1	100	99.580	ENSCAFG00020011913	SMNDC1	100	99.580	Canis_lupus_dingo
ENSMOCG00000002458	Smndc1	100	99.160	ENSCHIG00000010604	SMNDC1	100	99.160	Capra_hircus
ENSMOCG00000002458	Smndc1	100	99.160	ENSTSYG00000026454	SMNDC1	100	99.160	Carlito_syrichta
ENSMOCG00000002458	Smndc1	100	83.750	ENSCAPG00000009132	SMNDC1	100	98.507	Cavia_aperea
ENSMOCG00000002458	Smndc1	100	98.739	ENSCPOG00000031666	SMNDC1	100	98.739	Cavia_porcellus
ENSMOCG00000002458	Smndc1	100	99.580	ENSCCAG00000021793	SMNDC1	100	99.580	Cebus_capucinus
ENSMOCG00000002458	Smndc1	100	99.160	ENSCATG00000035910	SMNDC1	100	99.160	Cercocebus_atys
ENSMOCG00000002458	Smndc1	100	98.319	ENSCLAG00000002838	SMNDC1	100	98.319	Chinchilla_lanigera
ENSMOCG00000002458	Smndc1	100	99.580	ENSCSAG00000005169	SMNDC1	100	99.580	Chlorocebus_sabaeus
ENSMOCG00000002458	Smndc1	81	98.964	ENSCHOG00000002936	SMNDC1	100	98.964	Choloepus_hoffmanni
ENSMOCG00000002458	Smndc1	100	97.479	ENSCPBG00000012837	SMNDC1	100	97.479	Chrysemys_picta_bellii
ENSMOCG00000002458	Smndc1	100	78.992	ENSCANG00000036994	-	100	78.992	Colobus_angolensis_palliatus
ENSMOCG00000002458	Smndc1	100	91.597	ENSCANG00000034620	-	100	91.597	Colobus_angolensis_palliatus
ENSMOCG00000002458	Smndc1	100	99.580	ENSCANG00000031720	-	100	99.580	Colobus_angolensis_palliatus
ENSMOCG00000002458	Smndc1	100	98.739	ENSCGRG00001012973	Smndc1	100	98.739	Cricetulus_griseus_chok1gshd
ENSMOCG00000002458	Smndc1	100	98.739	ENSCGRG00000012396	Smndc1	100	98.739	Cricetulus_griseus_crigri
ENSMOCG00000002458	Smndc1	100	75.210	ENSCSEG00000015621	smndc1	100	75.210	Cynoglossus_semilaevis
ENSMOCG00000002458	Smndc1	100	76.050	ENSCVAG00000020432	smndc1	100	76.050	Cyprinodon_variegatus
ENSMOCG00000002458	Smndc1	100	78.571	ENSDARG00000056235	smndc1	100	78.571	Danio_rerio
ENSMOCG00000002458	Smndc1	100	99.580	ENSDNOG00000016387	SMNDC1	83	99.580	Dasypus_novemcinctus
ENSMOCG00000002458	Smndc1	100	99.580	ENSDORG00000023715	Smndc1	100	99.580	Dipodomys_ordii
ENSMOCG00000002458	Smndc1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSMOCG00000002458	Smndc1	100	70.539	ENSEBUG00000010929	smndc1	100	70.539	Eptatretus_burgeri
ENSMOCG00000002458	Smndc1	100	99.580	ENSEASG00005014930	SMNDC1	100	99.580	Equus_asinus_asinus
ENSMOCG00000002458	Smndc1	100	99.580	ENSECAG00000029973	SMNDC1	100	99.580	Equus_caballus
ENSMOCG00000002458	Smndc1	83	70.202	ENSEEUG00000013407	-	100	70.202	Erinaceus_europaeus
ENSMOCG00000002458	Smndc1	100	77.311	ENSELUG00000000227	smndc1	100	77.311	Esox_lucius
ENSMOCG00000002458	Smndc1	100	99.580	ENSFCAG00000027353	SMNDC1	100	99.580	Felis_catus
ENSMOCG00000002458	Smndc1	100	95.798	ENSFALG00000002306	SMNDC1	100	95.798	Ficedula_albicollis
ENSMOCG00000002458	Smndc1	100	98.319	ENSFDAG00000006468	SMNDC1	100	98.319	Fukomys_damarensis
ENSMOCG00000002458	Smndc1	100	75.630	ENSFHEG00000020150	smndc1	100	75.630	Fundulus_heteroclitus
ENSMOCG00000002458	Smndc1	100	76.050	ENSGMOG00000016585	smndc1	100	76.050	Gadus_morhua
ENSMOCG00000002458	Smndc1	100	95.798	ENSGALG00000008561	SMNDC1	100	95.798	Gallus_gallus
ENSMOCG00000002458	Smndc1	100	74.790	ENSGAFG00000011582	smndc1	100	74.790	Gambusia_affinis
ENSMOCG00000002458	Smndc1	100	75.210	ENSGACG00000009468	smndc1	100	75.210	Gasterosteus_aculeatus
ENSMOCG00000002458	Smndc1	100	97.479	ENSGAGG00000024547	SMNDC1	100	97.479	Gopherus_agassizii
ENSMOCG00000002458	Smndc1	100	99.580	ENSGGOG00000010071	SMNDC1	100	99.580	Gorilla_gorilla
ENSMOCG00000002458	Smndc1	100	76.050	ENSHBUG00000017596	smndc1	100	76.050	Haplochromis_burtoni
ENSMOCG00000002458	Smndc1	100	68.852	ENSHGLG00000001157	-	100	66.803	Heterocephalus_glaber_female
ENSMOCG00000002458	Smndc1	100	98.319	ENSHGLG00000013390	-	100	98.319	Heterocephalus_glaber_female
ENSMOCG00000002458	Smndc1	100	76.639	ENSHGLG00100004278	-	100	76.230	Heterocephalus_glaber_male
ENSMOCG00000002458	Smndc1	100	98.319	ENSHGLG00100004814	-	100	98.319	Heterocephalus_glaber_male
ENSMOCG00000002458	Smndc1	100	74.477	ENSHCOG00000000783	smndc1	100	74.477	Hippocampus_comes
ENSMOCG00000002458	Smndc1	100	76.891	ENSIPUG00000004217	smndc1	100	76.891	Ictalurus_punctatus
ENSMOCG00000002458	Smndc1	100	99.160	ENSSTOG00000006088	SMNDC1	100	99.160	Ictidomys_tridecemlineatus
ENSMOCG00000002458	Smndc1	100	98.739	ENSJJAG00000019974	Smndc1	100	98.739	Jaculus_jaculus
ENSMOCG00000002458	Smndc1	100	74.790	ENSKMAG00000020134	smndc1	100	74.790	Kryptolebias_marmoratus
ENSMOCG00000002458	Smndc1	100	74.370	ENSLBEG00000004598	smndc1	100	74.370	Labrus_bergylta
ENSMOCG00000002458	Smndc1	100	83.613	ENSLACG00000007784	SMNDC1	100	83.613	Latimeria_chalumnae
ENSMOCG00000002458	Smndc1	100	83.613	ENSLOCG00000012355	smndc1	100	83.613	Lepisosteus_oculatus
ENSMOCG00000002458	Smndc1	100	99.160	ENSLAFG00000014353	SMNDC1	100	99.160	Loxodonta_africana
ENSMOCG00000002458	Smndc1	100	99.580	ENSMFAG00000002433	-	100	99.580	Macaca_fascicularis
ENSMOCG00000002458	Smndc1	100	81.513	ENSMFAG00000038381	-	100	81.513	Macaca_fascicularis
ENSMOCG00000002458	Smndc1	100	99.580	ENSMMUG00000007775	SMNDC1	100	99.580	Macaca_mulatta
ENSMOCG00000002458	Smndc1	100	81.513	ENSMMUG00000045875	-	100	81.513	Macaca_mulatta
ENSMOCG00000002458	Smndc1	100	87.815	ENSMNEG00000033853	-	100	87.815	Macaca_nemestrina
ENSMOCG00000002458	Smndc1	100	99.580	ENSMNEG00000042963	-	100	99.580	Macaca_nemestrina
ENSMOCG00000002458	Smndc1	100	93.305	ENSMLEG00000040236	SMNDC1	100	92.887	Mandrillus_leucophaeus
ENSMOCG00000002458	Smndc1	89	72.770	ENSMAMG00000018233	smndc1	87	72.770	Mastacembelus_armatus
ENSMOCG00000002458	Smndc1	100	76.050	ENSMZEG00005027510	smndc1	100	76.050	Maylandia_zebra
ENSMOCG00000002458	Smndc1	84	95.500	ENSMGAG00000010777	SMNDC1	84	95.500	Meleagris_gallopavo
ENSMOCG00000002458	Smndc1	99	80.169	ENSMAUG00000005459	-	93	80.169	Mesocricetus_auratus
ENSMOCG00000002458	Smndc1	100	99.580	ENSMAUG00000012243	-	100	99.580	Mesocricetus_auratus
ENSMOCG00000002458	Smndc1	100	98.739	ENSMICG00000027336	-	100	98.739	Microcebus_murinus
ENSMOCG00000002458	Smndc1	100	85.714	ENSMICG00000031640	-	100	85.714	Microcebus_murinus
ENSMOCG00000002458	Smndc1	100	75.630	ENSMMOG00000008856	smndc1	100	75.630	Mola_mola
ENSMOCG00000002458	Smndc1	100	98.739	ENSMODG00000010542	SMNDC1	100	98.739	Monodelphis_domestica
ENSMOCG00000002458	Smndc1	100	76.050	ENSMALG00000017598	smndc1	100	76.050	Monopterus_albus
ENSMOCG00000002458	Smndc1	100	98.319	MGP_CAROLIEiJ_G0023072	Smndc1	100	98.319	Mus_caroli
ENSMOCG00000002458	Smndc1	100	98.739	ENSMUSG00000025024	Smndc1	100	98.739	Mus_musculus
ENSMOCG00000002458	Smndc1	100	98.319	MGP_PahariEiJ_G0014560	Smndc1	100	98.319	Mus_pahari
ENSMOCG00000002458	Smndc1	100	98.739	MGP_SPRETEiJ_G0023993	Smndc1	100	98.739	Mus_spretus
ENSMOCG00000002458	Smndc1	100	99.580	ENSMPUG00000002089	SMNDC1	100	99.580	Mustela_putorius_furo
ENSMOCG00000002458	Smndc1	100	98.319	ENSMLUG00000016007	SMNDC1	100	98.319	Myotis_lucifugus
ENSMOCG00000002458	Smndc1	100	98.739	ENSNGAG00000006833	Smndc1	100	98.739	Nannospalax_galili
ENSMOCG00000002458	Smndc1	100	75.630	ENSNBRG00000017089	smndc1	100	75.630	Neolamprologus_brichardi
ENSMOCG00000002458	Smndc1	100	99.580	ENSNLEG00000015471	SMNDC1	100	99.580	Nomascus_leucogenys
ENSMOCG00000002458	Smndc1	82	58.500	ENSMEUG00000010120	-	99	59.000	Notamacropus_eugenii
ENSMOCG00000002458	Smndc1	100	98.739	ENSOPRG00000015348	SMNDC1	100	98.739	Ochotona_princeps
ENSMOCG00000002458	Smndc1	100	69.328	ENSODEG00000007594	-	100	66.387	Octodon_degus
ENSMOCG00000002458	Smndc1	100	75.630	ENSONIG00000000434	smndc1	100	75.630	Oreochromis_niloticus
ENSMOCG00000002458	Smndc1	100	97.479	ENSOANG00000001598	SMNDC1	100	97.479	Ornithorhynchus_anatinus
ENSMOCG00000002458	Smndc1	100	75.210	ENSOCUG00000012274	-	100	76.891	Oryctolagus_cuniculus
ENSMOCG00000002458	Smndc1	100	98.739	ENSOCUG00000008145	-	100	98.739	Oryctolagus_cuniculus
ENSMOCG00000002458	Smndc1	100	75.630	ENSORLG00000005934	smndc1	95	75.630	Oryzias_latipes
ENSMOCG00000002458	Smndc1	100	75.630	ENSORLG00020008796	smndc1	95	75.630	Oryzias_latipes_hni
ENSMOCG00000002458	Smndc1	100	75.630	ENSORLG00015013666	smndc1	100	75.630	Oryzias_latipes_hsok
ENSMOCG00000002458	Smndc1	100	77.311	ENSOMEG00000007590	smndc1	100	77.311	Oryzias_melastigma
ENSMOCG00000002458	Smndc1	100	99.160	ENSOGAG00000000571	SMNDC1	100	99.160	Otolemur_garnettii
ENSMOCG00000002458	Smndc1	100	99.160	ENSOARG00000009500	SMNDC1	100	99.160	Ovis_aries
ENSMOCG00000002458	Smndc1	100	99.580	ENSPPAG00000027815	SMNDC1	100	99.580	Pan_paniscus
ENSMOCG00000002458	Smndc1	100	99.580	ENSPPRG00000013749	SMNDC1	100	99.580	Panthera_pardus
ENSMOCG00000002458	Smndc1	100	99.580	ENSPTIG00000011451	SMNDC1	100	99.580	Panthera_tigris_altaica
ENSMOCG00000002458	Smndc1	100	99.580	ENSPTRG00000002937	SMNDC1	100	99.580	Pan_troglodytes
ENSMOCG00000002458	Smndc1	100	93.697	ENSPANG00000031346	-	100	93.697	Papio_anubis
ENSMOCG00000002458	Smndc1	100	99.580	ENSPANG00000020805	-	100	99.580	Papio_anubis
ENSMOCG00000002458	Smndc1	100	80.252	ENSPKIG00000017164	smndc1	100	80.252	Paramormyrops_kingsleyae
ENSMOCG00000002458	Smndc1	100	97.059	ENSPSIG00000012257	SMNDC1	100	97.059	Pelodiscus_sinensis
ENSMOCG00000002458	Smndc1	100	73.109	ENSPMGG00000015651	smndc1	100	73.109	Periophthalmus_magnuspinnatus
ENSMOCG00000002458	Smndc1	100	99.580	ENSPEMG00000022058	Smndc1	100	99.580	Peromyscus_maniculatus_bairdii
ENSMOCG00000002458	Smndc1	100	68.033	ENSPMAG00000007705	smndc1	100	68.033	Petromyzon_marinus
ENSMOCG00000002458	Smndc1	97	63.478	ENSPCIG00000009693	-	100	63.478	Phascolarctos_cinereus
ENSMOCG00000002458	Smndc1	100	98.739	ENSPCIG00000018419	SMNDC1	100	98.739	Phascolarctos_cinereus
ENSMOCG00000002458	Smndc1	100	75.210	ENSPFOG00000017113	smndc1	100	75.210	Poecilia_formosa
ENSMOCG00000002458	Smndc1	100	75.630	ENSPLAG00000010372	smndc1	100	75.630	Poecilia_latipinna
ENSMOCG00000002458	Smndc1	100	75.630	ENSPMEG00000012288	smndc1	100	75.630	Poecilia_mexicana
ENSMOCG00000002458	Smndc1	100	74.790	ENSPREG00000012279	smndc1	100	74.790	Poecilia_reticulata
ENSMOCG00000002458	Smndc1	100	99.580	ENSPPYG00000002643	SMNDC1	100	99.580	Pongo_abelii
ENSMOCG00000002458	Smndc1	81	97.927	ENSPCAG00000016183	SMNDC1	100	97.927	Procavia_capensis
ENSMOCG00000002458	Smndc1	100	99.160	ENSPCOG00000024343	SMNDC1	100	99.160	Propithecus_coquereli
ENSMOCG00000002458	Smndc1	100	76.050	ENSPVAG00000004368	SMNDC1	100	76.050	Pteropus_vampyrus
ENSMOCG00000002458	Smndc1	92	69.778	ENSPNYG00000024093	smndc1	98	69.778	Pundamilia_nyererei
ENSMOCG00000002458	Smndc1	100	76.050	ENSPNAG00000025285	smndc1	100	76.050	Pygocentrus_nattereri
ENSMOCG00000002458	Smndc1	100	98.319	ENSRNOG00000014833	Smndc1	100	98.319	Rattus_norvegicus
ENSMOCG00000002458	Smndc1	100	99.160	ENSRBIG00000000224	-	100	99.160	Rhinopithecus_bieti
ENSMOCG00000002458	Smndc1	100	83.193	ENSRBIG00000032452	-	100	83.193	Rhinopithecus_bieti
ENSMOCG00000002458	Smndc1	100	83.613	ENSRROG00000039125	-	100	83.613	Rhinopithecus_roxellana
ENSMOCG00000002458	Smndc1	100	99.580	ENSRROG00000044992	-	100	99.580	Rhinopithecus_roxellana
ENSMOCG00000002458	Smndc1	100	99.580	ENSSBOG00000026789	SMNDC1	100	99.580	Saimiri_boliviensis_boliviensis
ENSMOCG00000002458	Smndc1	100	98.739	ENSSHAG00000015189	SMNDC1	100	98.739	Sarcophilus_harrisii
ENSMOCG00000002458	Smndc1	100	79.412	ENSSFOG00015008311	smndc1	100	79.412	Scleropages_formosus
ENSMOCG00000002458	Smndc1	100	75.630	ENSSMAG00000020118	smndc1	100	75.630	Scophthalmus_maximus
ENSMOCG00000002458	Smndc1	100	76.050	ENSSDUG00000015330	smndc1	100	76.050	Seriola_dumerili
ENSMOCG00000002458	Smndc1	100	76.050	ENSSLDG00000017325	smndc1	100	76.050	Seriola_lalandi_dorsalis
ENSMOCG00000002458	Smndc1	100	98.319	ENSSARG00000006063	SMNDC1	100	98.319	Sorex_araneus
ENSMOCG00000002458	Smndc1	100	95.798	ENSSPUG00000004574	SMNDC1	100	95.798	Sphenodon_punctatus
ENSMOCG00000002458	Smndc1	100	73.950	ENSSPAG00000000338	smndc1	100	73.950	Stegastes_partitus
ENSMOCG00000002458	Smndc1	100	99.160	ENSSSCG00000030507	SMNDC1	100	99.160	Sus_scrofa
ENSMOCG00000002458	Smndc1	100	95.798	ENSTGUG00000010599	SMNDC1	100	95.798	Taeniopygia_guttata
ENSMOCG00000002458	Smndc1	100	73.529	ENSTRUG00000023281	smndc1	100	73.529	Takifugu_rubripes
ENSMOCG00000002458	Smndc1	100	74.370	ENSTNIG00000013331	smndc1	100	74.370	Tetraodon_nigroviridis
ENSMOCG00000002458	Smndc1	100	99.160	ENSTBEG00000014337	SMNDC1	100	99.160	Tupaia_belangeri
ENSMOCG00000002458	Smndc1	100	99.580	ENSUAMG00000008142	SMNDC1	100	99.580	Ursus_americanus
ENSMOCG00000002458	Smndc1	100	99.580	ENSUMAG00000023722	SMNDC1	100	99.580	Ursus_maritimus
ENSMOCG00000002458	Smndc1	83	98.990	ENSVPAG00000003402	SMNDC1	100	98.990	Vicugna_pacos
ENSMOCG00000002458	Smndc1	100	99.580	ENSVVUG00000007820	SMNDC1	100	99.580	Vulpes_vulpes
ENSMOCG00000002458	Smndc1	60	80.986	ENSXETG00000015415	SMNDC1	100	80.986	Xenopus_tropicalis
ENSMOCG00000002458	Smndc1	100	74.790	ENSXCOG00000009159	smndc1	100	74.790	Xiphophorus_couchianus
ENSMOCG00000002458	Smndc1	100	74.370	ENSXMAG00000012755	smndc1	100	74.370	Xiphophorus_maculatus