EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000005040 (Gene tree)
Gene ID: 101979910
Gene Symbol: Snd1
Alias: Tudor-SN|p100 co-activator
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Plus strand
Length: 408628 bases
Position: chrJH996434.1:5069659-5478286
Accession: 101979910
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000005553	TUDOR	PF00567.24	5.2e-28	1	1
ENSMOCP00000005553	SNase	PF00565.17	8e-69	1	5
ENSMOCP00000005553	SNase	PF00565.17	8e-69	2	5
ENSMOCP00000005553	SNase	PF00565.17	8e-69	3	5
ENSMOCP00000005553	SNase	PF00565.17	8e-69	4	5
ENSMOCP00000005553	SNase	PF00565.17	8e-69	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000006606	-	3449	XM_005365723	ENSMOCP00000005553	910 (aa)	XP_005365780	UPI00038BDC6E

Gene Model

Click here to download ENSMOCG00000005040's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000005040's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000005040	Snd1	100	97.912	ENSG00000197157	SND1	100	97.912	Homo_sapiens
ENSMOCG00000005040	Snd1	100	83.991	ENSAPOG00000017599	snd1	99	84.872	Acanthochromis_polyacanthus
ENSMOCG00000005040	Snd1	100	97.807	ENSAMEG00000004664	SND1	94	97.807	Ailuropoda_melanoleuca
ENSMOCG00000005040	Snd1	98	82.307	ENSACIG00000003551	snd1	99	82.183	Amphilophus_citrinellus
ENSMOCG00000005040	Snd1	100	83.772	ENSAOCG00000014166	snd1	99	84.650	Amphiprion_ocellaris
ENSMOCG00000005040	Snd1	100	83.772	ENSAPEG00000007067	snd1	99	84.650	Amphiprion_percula
ENSMOCG00000005040	Snd1	98	83.128	ENSATEG00000018475	snd1	88	84.379	Anabas_testudineus
ENSMOCG00000005040	Snd1	100	98.352	ENSANAG00000034463	SND1	100	98.352	Aotus_nancymaae
ENSMOCG00000005040	Snd1	99	83.297	ENSACLG00000022897	snd1	99	84.298	Astatotilapia_calliptera
ENSMOCG00000005040	Snd1	99	84.378	ENSAMXG00000016318	snd1	98	84.967	Astyanax_mexicanus
ENSMOCG00000005040	Snd1	100	98.132	ENSBTAG00000010692	SND1	100	98.132	Bos_taurus
ENSMOCG00000005040	Snd1	98	46.652	WBGene00006626	tsn-1	98	47.091	Caenorhabditis_elegans
ENSMOCG00000005040	Snd1	100	97.912	ENSCJAG00000017668	SND1	100	97.912	Callithrix_jacchus
ENSMOCG00000005040	Snd1	100	98.132	ENSCAFG00000001700	SND1	100	98.132	Canis_familiaris
ENSMOCG00000005040	Snd1	100	98.132	ENSCAFG00020021639	SND1	100	98.132	Canis_lupus_dingo
ENSMOCG00000005040	Snd1	100	98.242	ENSCHIG00000023390	SND1	100	98.242	Capra_hircus
ENSMOCG00000005040	Snd1	73	98.415	ENSTSYG00000004979	SND1	96	98.415	Carlito_syrichta
ENSMOCG00000005040	Snd1	99	84.667	ENSCAPG00000010677	SND1	98	84.710	Cavia_aperea
ENSMOCG00000005040	Snd1	100	97.692	ENSCPOG00000006251	SND1	100	97.692	Cavia_porcellus
ENSMOCG00000005040	Snd1	100	98.242	ENSCCAG00000036847	SND1	100	98.242	Cebus_capucinus
ENSMOCG00000005040	Snd1	100	98.132	ENSCATG00000035214	SND1	100	98.132	Cercocebus_atys
ENSMOCG00000005040	Snd1	100	97.692	ENSCLAG00000011796	SND1	100	97.692	Chinchilla_lanigera
ENSMOCG00000005040	Snd1	100	98.132	ENSCSAG00000010182	SND1	100	98.132	Chlorocebus_sabaeus
ENSMOCG00000005040	Snd1	78	89.216	ENSCHOG00000002218	SND1	86	89.216	Choloepus_hoffmanni
ENSMOCG00000005040	Snd1	100	91.319	ENSCPBG00000018094	SND1	98	92.265	Chrysemys_picta_bellii
ENSMOCG00000005040	Snd1	98	57.301	ENSCING00000000524	-	98	57.301	Ciona_intestinalis
ENSMOCG00000005040	Snd1	99	58.086	ENSCSAVG00000008807	-	99	58.232	Ciona_savignyi
ENSMOCG00000005040	Snd1	100	98.132	ENSCANG00000035119	SND1	100	98.132	Colobus_angolensis_palliatus
ENSMOCG00000005040	Snd1	100	98.791	ENSCGRG00001022514	Snd1	100	98.791	Cricetulus_griseus_chok1gshd
ENSMOCG00000005040	Snd1	97	98.869	ENSCGRG00000012277	Snd1	99	98.869	Cricetulus_griseus_crigri
ENSMOCG00000005040	Snd1	98	84.228	ENSCSEG00000008661	snd1	98	84.228	Cynoglossus_semilaevis
ENSMOCG00000005040	Snd1	100	83.991	ENSCVAG00000010316	snd1	100	83.678	Cyprinodon_variegatus
ENSMOCG00000005040	Snd1	100	84.447	ENSDARG00000006766	snd1	97	87.410	Danio_rerio
ENSMOCG00000005040	Snd1	97	95.378	ENSDNOG00000006795	SND1	100	95.378	Dasypus_novemcinctus
ENSMOCG00000005040	Snd1	100	98.462	ENSDORG00000000336	Snd1	100	98.462	Dipodomys_ordii
ENSMOCG00000005040	Snd1	98	50.378	FBgn0035121	Tudor-SN	98	50.378	Drosophila_melanogaster
ENSMOCG00000005040	Snd1	90	100.000	ENSETEG00000000375	SND1	92	100.000	Echinops_telfairi
ENSMOCG00000005040	Snd1	65	67.838	ENSEBUG00000014201	-	84	76.503	Eptatretus_burgeri
ENSMOCG00000005040	Snd1	100	96.544	ENSEASG00005008513	SND1	100	96.544	Equus_asinus_asinus
ENSMOCG00000005040	Snd1	100	98.132	ENSECAG00000011451	SND1	100	98.132	Equus_caballus
ENSMOCG00000005040	Snd1	100	87.033	ENSEEUG00000014737	SND1	100	87.033	Erinaceus_europaeus
ENSMOCG00000005040	Snd1	99	82.346	ENSELUG00000001805	snd1	95	83.278	Esox_lucius
ENSMOCG00000005040	Snd1	100	98.132	ENSFCAG00000008289	SND1	100	98.132	Felis_catus
ENSMOCG00000005040	Snd1	100	97.802	ENSFDAG00000015881	SND1	100	97.802	Fukomys_damarensis
ENSMOCG00000005040	Snd1	99	82.093	ENSFHEG00000004093	snd1	97	84.633	Fundulus_heteroclitus
ENSMOCG00000005040	Snd1	64	74.576	ENSGMOG00000018932	snd1	64	74.576	Gadus_morhua
ENSMOCG00000005040	Snd1	100	84.211	ENSGAFG00000008421	snd1	99	85.118	Gambusia_affinis
ENSMOCG00000005040	Snd1	100	53.963	ENSGACG00000019793	snd1	98	54.425	Gasterosteus_aculeatus
ENSMOCG00000005040	Snd1	100	98.132	ENSGGOG00000009614	SND1	100	98.132	Gorilla_gorilla
ENSMOCG00000005040	Snd1	99	83.811	ENSHBUG00000019135	snd1	99	84.298	Haplochromis_burtoni
ENSMOCG00000005040	Snd1	100	97.473	ENSHGLG00000003618	SND1	100	97.473	Heterocephalus_glaber_female
ENSMOCG00000005040	Snd1	99	97.017	ENSHGLG00100012449	SND1	100	97.017	Heterocephalus_glaber_male
ENSMOCG00000005040	Snd1	100	82.895	ENSHCOG00000005266	snd1	98	84.116	Hippocampus_comes
ENSMOCG00000005040	Snd1	100	82.823	ENSIPUG00000013279	snd1	98	83.760	Ictalurus_punctatus
ENSMOCG00000005040	Snd1	100	98.242	ENSSTOG00000002140	SND1	100	98.242	Ictidomys_tridecemlineatus
ENSMOCG00000005040	Snd1	100	98.462	ENSJJAG00000009561	Snd1	100	98.462	Jaculus_jaculus
ENSMOCG00000005040	Snd1	100	83.991	ENSKMAG00000016997	snd1	98	85.011	Kryptolebias_marmoratus
ENSMOCG00000005040	Snd1	100	84.899	ENSLBEG00000013563	snd1	99	83.537	Labrus_bergylta
ENSMOCG00000005040	Snd1	99	85.006	ENSLOCG00000015537	snd1	98	85.006	Lepisosteus_oculatus
ENSMOCG00000005040	Snd1	100	97.363	ENSLAFG00000009696	SND1	100	97.363	Loxodonta_africana
ENSMOCG00000005040	Snd1	100	98.132	ENSMFAG00000038114	SND1	100	98.132	Macaca_fascicularis
ENSMOCG00000005040	Snd1	100	98.132	ENSMMUG00000015432	SND1	100	98.132	Macaca_mulatta
ENSMOCG00000005040	Snd1	100	98.132	ENSMNEG00000039808	SND1	100	98.132	Macaca_nemestrina
ENSMOCG00000005040	Snd1	100	98.022	ENSMLEG00000029040	SND1	100	98.022	Mandrillus_leucophaeus
ENSMOCG00000005040	Snd1	99	84.013	ENSMAMG00000011739	snd1	98	84.710	Mastacembelus_armatus
ENSMOCG00000005040	Snd1	99	83.297	ENSMZEG00005005681	snd1	99	84.298	Maylandia_zebra
ENSMOCG00000005040	Snd1	100	98.242	ENSMICG00000000097	SND1	100	98.242	Microcebus_murinus
ENSMOCG00000005040	Snd1	100	83.662	ENSMMOG00000001795	snd1	99	84.538	Mola_mola
ENSMOCG00000005040	Snd1	99	94.983	ENSMODG00000015182	SND1	99	94.983	Monodelphis_domestica
ENSMOCG00000005040	Snd1	100	83.443	ENSMALG00000012071	snd1	98	84.263	Monopterus_albus
ENSMOCG00000005040	Snd1	100	98.901	MGP_CAROLIEiJ_G0028159	Snd1	100	98.901	Mus_caroli
ENSMOCG00000005040	Snd1	100	98.681	ENSMUSG00000001424	Snd1	100	98.681	Mus_musculus
ENSMOCG00000005040	Snd1	100	98.901	MGP_PahariEiJ_G0021917	Snd1	100	98.988	Mus_pahari
ENSMOCG00000005040	Snd1	100	98.901	MGP_SPRETEiJ_G0029159	Snd1	100	98.901	Mus_spretus
ENSMOCG00000005040	Snd1	100	97.912	ENSMPUG00000006545	SND1	100	97.912	Mustela_putorius_furo
ENSMOCG00000005040	Snd1	97	96.425	ENSMLUG00000017130	SND1	99	96.425	Myotis_lucifugus
ENSMOCG00000005040	Snd1	100	98.681	ENSNGAG00000011186	Snd1	100	98.681	Nannospalax_galili
ENSMOCG00000005040	Snd1	99	83.187	ENSNBRG00000006681	snd1	99	84.187	Neolamprologus_brichardi
ENSMOCG00000005040	Snd1	100	98.022	ENSNLEG00000012263	SND1	100	98.079	Nomascus_leucogenys
ENSMOCG00000005040	Snd1	91	100.000	ENSOPRG00000013405	SND1	91	100.000	Ochotona_princeps
ENSMOCG00000005040	Snd1	100	97.802	ENSODEG00000011502	SND1	100	97.802	Octodon_degus
ENSMOCG00000005040	Snd1	99	83.187	ENSONIG00000011481	snd1	96	84.187	Oreochromis_niloticus
ENSMOCG00000005040	Snd1	98	94.144	ENSOANG00000000817	SND1	99	93.534	Ornithorhynchus_anatinus
ENSMOCG00000005040	Snd1	100	96.703	ENSOCUG00000001620	SND1	100	96.703	Oryctolagus_cuniculus
ENSMOCG00000005040	Snd1	98	84.134	ENSORLG00000015201	snd1	98	84.134	Oryzias_latipes
ENSMOCG00000005040	Snd1	98	84.246	ENSORLG00020013991	snd1	98	84.246	Oryzias_latipes_hni
ENSMOCG00000005040	Snd1	98	84.246	ENSORLG00015012436	snd1	98	84.246	Oryzias_latipes_hsok
ENSMOCG00000005040	Snd1	100	83.333	ENSOMEG00000006406	snd1	98	84.564	Oryzias_melastigma
ENSMOCG00000005040	Snd1	100	97.697	ENSOGAG00000013356	SND1	94	97.697	Otolemur_garnettii
ENSMOCG00000005040	Snd1	97	95.367	ENSOARG00000002149	SND1	100	95.367	Ovis_aries
ENSMOCG00000005040	Snd1	100	98.022	ENSPPAG00000042947	SND1	100	98.022	Pan_paniscus
ENSMOCG00000005040	Snd1	100	98.132	ENSPPRG00000004494	SND1	100	98.132	Panthera_pardus
ENSMOCG00000005040	Snd1	100	98.022	ENSPTIG00000014214	SND1	100	98.022	Panthera_tigris_altaica
ENSMOCG00000005040	Snd1	100	98.022	ENSPTRG00000023911	SND1	100	98.022	Pan_troglodytes
ENSMOCG00000005040	Snd1	97	98.077	ENSPANG00000011997	SND1	99	98.077	Papio_anubis
ENSMOCG00000005040	Snd1	99	81.367	ENSPKIG00000023494	snd1	98	81.687	Paramormyrops_kingsleyae
ENSMOCG00000005040	Snd1	92	82.994	ENSPMGG00000003629	snd1	100	82.994	Periophthalmus_magnuspinnatus
ENSMOCG00000005040	Snd1	100	99.670	ENSPEMG00000010240	Snd1	100	99.670	Peromyscus_maniculatus_bairdii
ENSMOCG00000005040	Snd1	97	73.333	ENSPMAG00000007915	-	99	73.333	Petromyzon_marinus
ENSMOCG00000005040	Snd1	99	95.206	ENSPCIG00000011561	SND1	99	95.206	Phascolarctos_cinereus
ENSMOCG00000005040	Snd1	100	83.662	ENSPFOG00000001557	snd1	99	84.538	Poecilia_formosa
ENSMOCG00000005040	Snd1	100	83.662	ENSPLAG00000018459	snd1	96	84.538	Poecilia_latipinna
ENSMOCG00000005040	Snd1	100	84.101	ENSPMEG00000006803	snd1	99	84.983	Poecilia_mexicana
ENSMOCG00000005040	Snd1	100	83.991	ENSPREG00000002189	snd1	99	84.872	Poecilia_reticulata
ENSMOCG00000005040	Snd1	93	97.891	ENSPPYG00000017972	SND1	100	97.891	Pongo_abelii
ENSMOCG00000005040	Snd1	100	85.824	ENSPCAG00000011305	SND1	99	85.730	Procavia_capensis
ENSMOCG00000005040	Snd1	100	97.912	ENSPCOG00000026791	SND1	100	97.912	Propithecus_coquereli
ENSMOCG00000005040	Snd1	100	96.264	ENSPVAG00000013945	SND1	100	96.264	Pteropus_vampyrus
ENSMOCG00000005040	Snd1	99	83.297	ENSPNYG00000000932	snd1	99	84.298	Pundamilia_nyererei
ENSMOCG00000005040	Snd1	100	83.479	ENSPNAG00000001206	snd1	98	84.444	Pygocentrus_nattereri
ENSMOCG00000005040	Snd1	99	98.348	ENSRNOG00000031173	Snd1	99	98.348	Rattus_norvegicus
ENSMOCG00000005040	Snd1	73	98.496	ENSRBIG00000027782	-	93	98.669	Rhinopithecus_bieti
ENSMOCG00000005040	Snd1	100	98.132	ENSRROG00000033020	SND1	100	98.132	Rhinopithecus_roxellana
ENSMOCG00000005040	Snd1	100	98.132	ENSSBOG00000032461	SND1	100	98.132	Saimiri_boliviensis_boliviensis
ENSMOCG00000005040	Snd1	98	91.779	ENSSHAG00000015359	SND1	100	91.779	Sarcophilus_harrisii
ENSMOCG00000005040	Snd1	100	82.155	ENSSFOG00015001103	snd1	98	83.241	Scleropages_formosus
ENSMOCG00000005040	Snd1	98	84.116	ENSSMAG00000001932	snd1	93	83.853	Scophthalmus_maximus
ENSMOCG00000005040	Snd1	100	83.772	ENSSDUG00000002699	snd1	92	84.650	Seriola_dumerili
ENSMOCG00000005040	Snd1	100	76.535	ENSSLDG00000001950	snd1	98	77.308	Seriola_lalandi_dorsalis
ENSMOCG00000005040	Snd1	86	98.113	ENSSARG00000004877	SND1	92	98.113	Sorex_araneus
ENSMOCG00000005040	Snd1	73	86.783	ENSSPUG00000017586	SND1	96	86.783	Sphenodon_punctatus
ENSMOCG00000005040	Snd1	76	84.433	ENSSPAG00000021398	snd1	96	86.562	Stegastes_partitus
ENSMOCG00000005040	Snd1	100	97.802	ENSSSCG00000016590	SND1	100	97.802	Sus_scrofa
ENSMOCG00000005040	Snd1	99	83.394	ENSTRUG00000014067	snd1	98	83.669	Takifugu_rubripes
ENSMOCG00000005040	Snd1	100	83.333	ENSTNIG00000011019	snd1	98	84.340	Tetraodon_nigroviridis
ENSMOCG00000005040	Snd1	93	92.335	ENSTBEG00000003999	SND1	100	92.335	Tupaia_belangeri
ENSMOCG00000005040	Snd1	100	93.407	ENSTTRG00000006059	SND1	100	93.407	Tursiops_truncatus
ENSMOCG00000005040	Snd1	86	98.099	ENSUAMG00000005604	-	93	98.099	Ursus_americanus
ENSMOCG00000005040	Snd1	71	89.091	ENSUAMG00000002820	-	86	88.978	Ursus_americanus
ENSMOCG00000005040	Snd1	100	98.022	ENSUMAG00000005960	SND1	100	98.022	Ursus_maritimus
ENSMOCG00000005040	Snd1	77	100.000	ENSVPAG00000008302	SND1	74	100.000	Vicugna_pacos
ENSMOCG00000005040	Snd1	100	97.912	ENSVVUG00000007226	SND1	100	97.912	Vulpes_vulpes
ENSMOCG00000005040	Snd1	97	84.181	ENSXETG00000023043	snd1	100	84.096	Xenopus_tropicalis
ENSMOCG00000005040	Snd1	92	81.473	ENSXCOG00000013629	snd1	99	81.473	Xiphophorus_couchianus
ENSMOCG00000005040	Snd1	100	84.211	ENSXMAG00000011469	snd1	99	85.095	Xiphophorus_maculatus