EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSMOCG00000005699 (Gene tree)
Gene ID: 101985793
Gene Symbol: Upf1
Alias: B430202H16Rik|PNORF-1|Rent1
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Microtus_ochrogaster
Status: putative
Strand: Minus strand
Length: 21342 bases
Position: chrJH996511.1:757295-778636
Accession: 101985793
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMOCP00000006123	UPF1_Zn_bind	PF09416.10	6.1e-75	1	1
ENSMOCP00000006123	ResIII	PF04851.15	2.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMOCT00000007433	-	3891	XM_005370549	ENSMOCP00000006123	1124 (aa)	XP_005370606	UPI00038C4104

Gene Model

Click here to download ENSMOCG00000005699's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMOCG00000005699's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMOCG00000005699	Upf1	100	98.406	ENSG00000005007	UPF1	100	98.406	Homo_sapiens
ENSMOCG00000005699	Upf1	100	91.659	ENSAPOG00000010916	-	100	91.571	Acanthochromis_polyacanthus
ENSMOCG00000005699	Upf1	100	90.619	ENSAPOG00000023773	upf1	100	90.619	Acanthochromis_polyacanthus
ENSMOCG00000005699	Upf1	100	97.961	ENSAMEG00000011474	UPF1	100	97.961	Ailuropoda_melanoleuca
ENSMOCG00000005699	Upf1	100	90.363	ENSACIG00000019949	upf1	100	90.708	Amphilophus_citrinellus
ENSMOCG00000005699	Upf1	92	93.340	ENSACIG00000010985	-	100	93.436	Amphilophus_citrinellus
ENSMOCG00000005699	Upf1	100	90.133	ENSAOCG00000018519	upf1	100	90.535	Amphiprion_ocellaris
ENSMOCG00000005699	Upf1	100	91.659	ENSAOCG00000006352	-	100	91.571	Amphiprion_ocellaris
ENSMOCG00000005699	Upf1	100	90.133	ENSAPEG00000016344	upf1	100	90.535	Amphiprion_percula
ENSMOCG00000005699	Upf1	100	91.659	ENSAPEG00000006292	-	100	91.571	Amphiprion_percula
ENSMOCG00000005699	Upf1	100	89.326	ENSATEG00000017867	upf1	100	89.939	Anabas_testudineus
ENSMOCG00000005699	Upf1	100	91.748	ENSATEG00000016606	-	100	91.659	Anabas_testudineus
ENSMOCG00000005699	Upf1	94	97.621	ENSAPLG00000009175	UPF1	99	97.621	Anas_platyrhynchos
ENSMOCG00000005699	Upf1	96	95.933	ENSANAG00000024107	UPF1	98	95.933	Aotus_nancymaae
ENSMOCG00000005699	Upf1	100	90.097	ENSACLG00000007181	upf1	100	90.442	Astatotilapia_calliptera
ENSMOCG00000005699	Upf1	100	91.563	ENSACLG00000022630	-	100	91.385	Astatotilapia_calliptera
ENSMOCG00000005699	Upf1	100	92.192	ENSAMXG00000042187	upf1	100	92.547	Astyanax_mexicanus
ENSMOCG00000005699	Upf1	100	98.580	ENSBTAG00000020922	UPF1	100	98.580	Bos_taurus
ENSMOCG00000005699	Upf1	89	50.391	WBGene00004880	smg-2	99	47.814	Caenorhabditis_elegans
ENSMOCG00000005699	Upf1	100	98.406	ENSCJAG00000019627	UPF1	100	98.406	Callithrix_jacchus
ENSMOCG00000005699	Upf1	100	98.496	ENSCAFG00000014578	UPF1	100	98.496	Canis_familiaris
ENSMOCG00000005699	Upf1	100	97.522	ENSCAFG00020012347	UPF1	100	97.522	Canis_lupus_dingo
ENSMOCG00000005699	Upf1	100	98.224	ENSCHIG00000011018	UPF1	100	98.224	Capra_hircus
ENSMOCG00000005699	Upf1	96	97.584	ENSTSYG00000008877	UPF1	99	97.584	Carlito_syrichta
ENSMOCG00000005699	Upf1	95	97.007	ENSCAPG00000005758	UPF1	96	97.007	Cavia_aperea
ENSMOCG00000005699	Upf1	100	96.359	ENSCPOG00000025463	UPF1	100	96.359	Cavia_porcellus
ENSMOCG00000005699	Upf1	100	98.577	ENSCCAG00000032175	UPF1	100	98.577	Cebus_capucinus
ENSMOCG00000005699	Upf1	95	97.749	ENSCATG00000040306	UPF1	98	97.749	Cercocebus_atys
ENSMOCG00000005699	Upf1	96	97.963	ENSCLAG00000004037	UPF1	100	99.240	Chinchilla_lanigera
ENSMOCG00000005699	Upf1	100	97.343	ENSCSAG00000005276	UPF1	100	97.343	Chlorocebus_sabaeus
ENSMOCG00000005699	Upf1	100	95.318	ENSCPBG00000012513	UPF1	100	95.318	Chrysemys_picta_bellii
ENSMOCG00000005699	Upf1	78	77.816	ENSCING00000021399	-	99	77.702	Ciona_intestinalis
ENSMOCG00000005699	Upf1	99	71.680	ENSCSAVG00000006533	-	99	71.592	Ciona_savignyi
ENSMOCG00000005699	Upf1	96	97.677	ENSCANG00000029819	UPF1	99	97.677	Colobus_angolensis_palliatus
ENSMOCG00000005699	Upf1	100	98.843	ENSCGRG00001021067	Upf1	100	98.843	Cricetulus_griseus_chok1gshd
ENSMOCG00000005699	Upf1	95	98.877	ENSCGRG00000013480	Upf1	99	98.877	Cricetulus_griseus_crigri
ENSMOCG00000005699	Upf1	100	85.626	ENSCSEG00000017239	upf1	100	85.626	Cynoglossus_semilaevis
ENSMOCG00000005699	Upf1	100	91.652	ENSCSEG00000016159	-	100	91.474	Cynoglossus_semilaevis
ENSMOCG00000005699	Upf1	100	91.393	ENSCVAG00000010561	upf1	100	91.216	Cyprinodon_variegatus
ENSMOCG00000005699	Upf1	100	92.014	ENSDARG00000016302	upf1	100	92.369	Danio_rerio
ENSMOCG00000005699	Upf1	95	95.794	ENSDORG00000009984	Upf1	96	95.794	Dipodomys_ordii
ENSMOCG00000005699	Upf1	85	70.195	FBgn0030354	Upf1	84	66.667	Drosophila_melanogaster
ENSMOCG00000005699	Upf1	55	85.233	ENSEBUG00000010069	upf1	96	84.912	Eptatretus_burgeri
ENSMOCG00000005699	Upf1	100	97.782	ENSEASG00005006549	UPF1	100	97.782	Equus_asinus_asinus
ENSMOCG00000005699	Upf1	100	97.782	ENSECAG00000010639	UPF1	100	97.782	Equus_caballus
ENSMOCG00000005699	Upf1	100	90.468	ENSELUG00000012916	-	100	90.829	Esox_lucius
ENSMOCG00000005699	Upf1	100	89.753	ENSELUG00000020917	upf1	100	89.929	Esox_lucius
ENSMOCG00000005699	Upf1	100	98.407	ENSFCAG00000009757	UPF1	100	98.407	Felis_catus
ENSMOCG00000005699	Upf1	94	96.777	ENSFALG00000009312	UPF1	96	96.777	Ficedula_albicollis
ENSMOCG00000005699	Upf1	97	96.697	ENSFDAG00000014816	UPF1	100	99.144	Fukomys_damarensis
ENSMOCG00000005699	Upf1	100	87.940	ENSFHEG00000006428	upf1	100	87.940	Fundulus_heteroclitus
ENSMOCG00000005699	Upf1	85	92.740	ENSFHEG00000016276	-	96	92.922	Fundulus_heteroclitus
ENSMOCG00000005699	Upf1	100	91.216	ENSGMOG00000007541	upf1	100	91.925	Gadus_morhua
ENSMOCG00000005699	Upf1	100	96.103	ENSGALG00000003220	UPF1	100	96.103	Gallus_gallus
ENSMOCG00000005699	Upf1	62	93.475	ENSGAFG00000015443	-	88	91.209	Gambusia_affinis
ENSMOCG00000005699	Upf1	100	90.764	ENSGAFG00000004831	upf1	100	91.030	Gambusia_affinis
ENSMOCG00000005699	Upf1	100	96.178	ENSGAGG00000022217	UPF1	100	96.178	Gopherus_agassizii
ENSMOCG00000005699	Upf1	94	98.006	ENSGGOG00000002608	UPF1	99	98.006	Gorilla_gorilla
ENSMOCG00000005699	Upf1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSMOCG00000005699	Upf1	90	85.057	ENSHBUG00000014694	upf1	100	85.057	Haplochromis_burtoni
ENSMOCG00000005699	Upf1	100	98.229	ENSHGLG00000010900	UPF1	100	98.229	Heterocephalus_glaber_female
ENSMOCG00000005699	Upf1	96	94.940	ENSHGLG00100005904	UPF1	99	94.940	Heterocephalus_glaber_male
ENSMOCG00000005699	Upf1	100	90.764	ENSHCOG00000008918	upf1	100	92.440	Hippocampus_comes
ENSMOCG00000005699	Upf1	100	92.635	ENSIPUG00000005108	UPF1	100	92.902	Ictalurus_punctatus
ENSMOCG00000005699	Upf1	100	98.843	ENSSTOG00000009196	UPF1	100	98.843	Ictidomys_tridecemlineatus
ENSMOCG00000005699	Upf1	100	99.110	ENSJJAG00000023151	Upf1	100	99.110	Jaculus_jaculus
ENSMOCG00000005699	Upf1	100	91.659	ENSKMAG00000004962	upf1	100	91.482	Kryptolebias_marmoratus
ENSMOCG00000005699	Upf1	100	88.694	ENSLBEG00000014862	upf1	100	89.658	Labrus_bergylta
ENSMOCG00000005699	Upf1	100	91.571	ENSLBEG00000027848	-	100	91.482	Labrus_bergylta
ENSMOCG00000005699	Upf1	62	96.413	ENSLACG00000008482	UPF1	100	96.413	Latimeria_chalumnae
ENSMOCG00000005699	Upf1	100	93.961	ENSLOCG00000002072	upf1	100	93.872	Lepisosteus_oculatus
ENSMOCG00000005699	Upf1	100	97.965	ENSLAFG00000014963	UPF1	100	97.965	Loxodonta_africana
ENSMOCG00000005699	Upf1	100	98.577	ENSMFAG00000037748	UPF1	100	98.577	Macaca_fascicularis
ENSMOCG00000005699	Upf1	100	98.754	ENSMMUG00000023286	UPF1	100	98.754	Macaca_mulatta
ENSMOCG00000005699	Upf1	100	98.577	ENSMNEG00000000046	UPF1	100	98.577	Macaca_nemestrina
ENSMOCG00000005699	Upf1	94	99.049	ENSMLEG00000028404	UPF1	100	99.049	Mandrillus_leucophaeus
ENSMOCG00000005699	Upf1	100	89.064	ENSMAMG00000006229	upf1	100	89.939	Mastacembelus_armatus
ENSMOCG00000005699	Upf1	100	90.949	ENSMAMG00000006231	-	100	91.304	Mastacembelus_armatus
ENSMOCG00000005699	Upf1	100	89.161	ENSMZEG00005003489	upf1	100	90.158	Maylandia_zebra
ENSMOCG00000005699	Upf1	100	91.563	ENSMZEG00005016386	-	100	91.385	Maylandia_zebra
ENSMOCG00000005699	Upf1	94	97.148	ENSMGAG00000004745	UPF1	100	97.148	Meleagris_gallopavo
ENSMOCG00000005699	Upf1	95	98.237	ENSMAUG00000011398	Upf1	97	98.237	Mesocricetus_auratus
ENSMOCG00000005699	Upf1	100	97.343	ENSMICG00000001659	UPF1	100	97.343	Microcebus_murinus
ENSMOCG00000005699	Upf1	94	91.263	ENSMMOG00000007537	-	99	91.358	Mola_mola
ENSMOCG00000005699	Upf1	100	89.867	ENSMMOG00000007881	upf1	100	90.142	Mola_mola
ENSMOCG00000005699	Upf1	100	97.176	ENSMODG00000003689	UPF1	100	97.176	Monodelphis_domestica
ENSMOCG00000005699	Upf1	100	90.459	ENSMALG00000018100	-	100	90.371	Monopterus_albus
ENSMOCG00000005699	Upf1	100	90.133	ENSMALG00000000144	upf1	100	90.222	Monopterus_albus
ENSMOCG00000005699	Upf1	100	99.644	MGP_CAROLIEiJ_G0031142	Upf1	100	99.644	Mus_caroli
ENSMOCG00000005699	Upf1	100	99.644	ENSMUSG00000058301	Upf1	100	99.644	Mus_musculus
ENSMOCG00000005699	Upf1	100	99.644	MGP_PahariEiJ_G0021607	Upf1	100	99.644	Mus_pahari
ENSMOCG00000005699	Upf1	100	99.644	MGP_SPRETEiJ_G0032260	Upf1	100	99.644	Mus_spretus
ENSMOCG00000005699	Upf1	100	97.522	ENSMPUG00000015516	UPF1	100	97.522	Mustela_putorius_furo
ENSMOCG00000005699	Upf1	99	97.158	ENSMLUG00000012122	UPF1	99	97.158	Myotis_lucifugus
ENSMOCG00000005699	Upf1	100	99.201	ENSNGAG00000024107	Upf1	100	99.201	Nannospalax_galili
ENSMOCG00000005699	Upf1	100	89.283	ENSNBRG00000022069	-	100	92.308	Neolamprologus_brichardi
ENSMOCG00000005699	Upf1	100	88.417	ENSNBRG00000000670	upf1	100	88.761	Neolamprologus_brichardi
ENSMOCG00000005699	Upf1	94	93.251	ENSNLEG00000006062	UPF1	100	93.251	Nomascus_leucogenys
ENSMOCG00000005699	Upf1	83	93.333	ENSMEUG00000014146	-	83	93.333	Notamacropus_eugenii
ENSMOCG00000005699	Upf1	94	90.304	ENSOPRG00000014018	UPF1	100	90.304	Ochotona_princeps
ENSMOCG00000005699	Upf1	100	97.865	ENSODEG00000012426	UPF1	100	97.865	Octodon_degus
ENSMOCG00000005699	Upf1	100	91.652	ENSONIG00000012729	-	100	91.474	Oreochromis_niloticus
ENSMOCG00000005699	Upf1	100	89.598	ENSONIG00000010452	upf1	100	90.598	Oreochromis_niloticus
ENSMOCG00000005699	Upf1	100	97.074	ENSOANG00000004568	UPF1	100	97.074	Ornithorhynchus_anatinus
ENSMOCG00000005699	Upf1	100	91.571	ENSORLG00000008453	upf1	100	91.482	Oryzias_latipes
ENSMOCG00000005699	Upf1	100	91.401	ENSORLG00020014758	upf1	100	91.312	Oryzias_latipes_hni
ENSMOCG00000005699	Upf1	100	91.401	ENSORLG00015010165	upf1	100	91.312	Oryzias_latipes_hsok
ENSMOCG00000005699	Upf1	100	91.659	ENSOMEG00000003665	upf1	100	91.482	Oryzias_melastigma
ENSMOCG00000005699	Upf1	100	97.520	ENSOGAG00000012866	UPF1	100	97.520	Otolemur_garnettii
ENSMOCG00000005699	Upf1	96	96.685	ENSOARG00000010739	UPF1	100	96.685	Ovis_aries
ENSMOCG00000005699	Upf1	96	97.770	ENSPPAG00000043884	UPF1	97	97.770	Pan_paniscus
ENSMOCG00000005699	Upf1	100	98.407	ENSPPRG00000023470	UPF1	100	98.407	Panthera_pardus
ENSMOCG00000005699	Upf1	94	96.194	ENSPTIG00000010159	UPF1	99	96.194	Panthera_tigris_altaica
ENSMOCG00000005699	Upf1	100	98.577	ENSPTRG00000010721	UPF1	100	98.577	Pan_troglodytes
ENSMOCG00000005699	Upf1	100	98.577	ENSPANG00000008847	UPF1	100	98.577	Papio_anubis
ENSMOCG00000005699	Upf1	91	94.078	ENSPKIG00000006069	upf1	99	91.533	Paramormyrops_kingsleyae
ENSMOCG00000005699	Upf1	68	97.255	ENSPSIG00000009491	UPF1	100	97.255	Pelodiscus_sinensis
ENSMOCG00000005699	Upf1	100	88.496	ENSPMGG00000017327	upf1	100	88.516	Periophthalmus_magnuspinnatus
ENSMOCG00000005699	Upf1	100	99.822	ENSPEMG00000001085	Upf1	100	99.822	Peromyscus_maniculatus_bairdii
ENSMOCG00000005699	Upf1	100	86.814	ENSPMAG00000001206	upf1	100	86.460	Petromyzon_marinus
ENSMOCG00000005699	Upf1	100	96.811	ENSPCIG00000006156	UPF1	100	96.811	Phascolarctos_cinereus
ENSMOCG00000005699	Upf1	100	90.853	ENSPLAG00000016232	-	100	91.119	Poecilia_latipinna
ENSMOCG00000005699	Upf1	100	88.644	ENSPLAG00000018155	-	100	88.468	Poecilia_latipinna
ENSMOCG00000005699	Upf1	100	89.105	ENSPMEG00000011443	-	100	88.928	Poecilia_mexicana
ENSMOCG00000005699	Upf1	100	90.941	ENSPMEG00000016319	-	100	91.208	Poecilia_mexicana
ENSMOCG00000005699	Upf1	100	90.675	ENSPREG00000011247	-	100	90.941	Poecilia_reticulata
ENSMOCG00000005699	Upf1	100	88.938	ENSPREG00000009940	upf1	100	88.850	Poecilia_reticulata
ENSMOCG00000005699	Upf1	100	93.446	ENSPPYG00000009752	UPF1	100	93.446	Pongo_abelii
ENSMOCG00000005699	Upf1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSMOCG00000005699	Upf1	100	98.932	ENSPCOG00000023813	UPF1	100	98.932	Propithecus_coquereli
ENSMOCG00000005699	Upf1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSMOCG00000005699	Upf1	100	89.161	ENSPNYG00000003694	upf1	100	90.158	Pundamilia_nyererei
ENSMOCG00000005699	Upf1	100	91.563	ENSPNYG00000016731	-	100	91.385	Pundamilia_nyererei
ENSMOCG00000005699	Upf1	100	92.192	ENSPNAG00000025614	upf1	100	92.547	Pygocentrus_nattereri
ENSMOCG00000005699	Upf1	100	99.733	ENSRNOG00000020134	Upf1	100	99.733	Rattus_norvegicus
ENSMOCG00000005699	Upf1	96	95.353	ENSRBIG00000013894	UPF1	98	97.619	Rhinopithecus_bieti
ENSMOCG00000005699	Upf1	96	97.677	ENSRROG00000040935	UPF1	99	97.677	Rhinopithecus_roxellana
ENSMOCG00000005699	Upf1	76	55.309	YMR080C	NAM7	86	55.309	Saccharomyces_cerevisiae
ENSMOCG00000005699	Upf1	96	97.220	ENSSBOG00000023632	UPF1	99	97.220	Saimiri_boliviensis_boliviensis
ENSMOCG00000005699	Upf1	94	98.291	ENSSHAG00000010499	UPF1	100	98.291	Sarcophilus_harrisii
ENSMOCG00000005699	Upf1	100	94.227	ENSSFOG00015021095	upf1	99	95.817	Scleropages_formosus
ENSMOCG00000005699	Upf1	100	88.344	ENSSMAG00000005055	upf1	100	88.967	Scophthalmus_maximus
ENSMOCG00000005699	Upf1	100	91.659	ENSSMAG00000021018	-	100	91.571	Scophthalmus_maximus
ENSMOCG00000005699	Upf1	100	89.326	ENSSDUG00000013320	upf1	100	90.026	Seriola_dumerili
ENSMOCG00000005699	Upf1	100	91.925	ENSSDUG00000009629	-	100	91.837	Seriola_dumerili
ENSMOCG00000005699	Upf1	100	91.925	ENSSLDG00000006878	-	100	91.837	Seriola_lalandi_dorsalis
ENSMOCG00000005699	Upf1	100	90.115	ENSSLDG00000020868	upf1	100	90.308	Seriola_lalandi_dorsalis
ENSMOCG00000005699	Upf1	100	95.911	ENSSPUG00000010538	UPF1	100	95.911	Sphenodon_punctatus
ENSMOCG00000005699	Upf1	100	91.741	ENSSPAG00000011521	-	100	91.563	Stegastes_partitus
ENSMOCG00000005699	Upf1	100	88.544	ENSSPAG00000000003	upf1	100	88.496	Stegastes_partitus
ENSMOCG00000005699	Upf1	100	98.492	ENSSSCG00000039301	UPF1	100	98.492	Sus_scrofa
ENSMOCG00000005699	Upf1	83	89.255	ENSTGUG00000001057	UPF1	100	95.126	Taeniopygia_guttata
ENSMOCG00000005699	Upf1	100	89.716	ENSTRUG00000000150	upf1	100	89.600	Takifugu_rubripes
ENSMOCG00000005699	Upf1	100	90.675	ENSTRUG00000005131	-	100	90.586	Takifugu_rubripes
ENSMOCG00000005699	Upf1	100	93.523	ENSTTRG00000011544	UPF1	100	93.345	Tursiops_truncatus
ENSMOCG00000005699	Upf1	100	97.434	ENSUAMG00000007093	UPF1	100	97.434	Ursus_americanus
ENSMOCG00000005699	Upf1	95	98.223	ENSUMAG00000006652	UPF1	99	98.223	Ursus_maritimus
ENSMOCG00000005699	Upf1	100	97.522	ENSVVUG00000007797	UPF1	100	97.522	Vulpes_vulpes
ENSMOCG00000005699	Upf1	100	81.938	ENSXETG00000013602	upf1	100	81.850	Xenopus_tropicalis
ENSMOCG00000005699	Upf1	93	92.706	ENSXCOG00000005764	-	100	93.186	Xiphophorus_couchianus
ENSMOCG00000005699	Upf1	97	88.705	ENSXCOG00000015275	-	96	88.705	Xiphophorus_couchianus
ENSMOCG00000005699	Upf1	100	88.988	ENSXMAG00000001703	-	100	88.988	Xiphophorus_maculatus
ENSMOCG00000005699	Upf1	100	90.764	ENSXMAG00000002540	-	100	91.030	Xiphophorus_maculatus